Gvermi13680.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13680.t1
Unique NameGvermi13680.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:121112..121996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35641
Preferred namecfxQ
PFAMsAAA
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue3.07e-162
EggNOG OGsCOG0464@1|root,KOG0730@2759|Eukaryota
DescriptionATP binding
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13680Gvermi13680Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 121112..121996 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13680.t1.start1Gvermi13680.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 121112..121114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13680.t1.CDS1Gvermi13680.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 121112..121996 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13680.t1.exon1Gvermi13680.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 121112..121996 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13680.t1.stop1Gvermi13680.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 121994..121996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13680.t1Gvermi13680.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 121112..121996 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13680.t1 ID=Gvermi13680.t1|Name=Gvermi13680.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=295bp
MTTKQTTDTLLNLKEEYDKTKIQEILDELEQELIGLKPVKTRIKEIAALL
LIDRLRNQLELVSGSPGLHMSFTGSPGTGKTTVAMKMADILHRLNYIRKG
HLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERD
YGAEAIEILLQVMENQRDDLVVIFAGYKDKMDKFYESNPGLSSRVTNHVD
FPDYTAEELLEIAKLMLEEQQYKFASDANEVLLDYANRRMKQPHFANARS
IRNAIDRARMRQANRIFLSGDKILTKADLTTIQSEDILKSRLFN*
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spliced messenger RNA

>Gvermi13680.t1 ID=Gvermi13680.t1|Name=Gvermi13680.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_59:121112..121996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACAAAACAAACAACAGACACTTTATTAAACTTAAAAGAAGAATA
CGATAAAACAAAAATACAAGAAATTCTTGACGAACTAGAACAAGAGCTTA
TAGGATTAAAACCTGTAAAAACAAGAATTAAAGAAATAGCTGCTCTACTA
CTGATAGATCGATTAAGAAATCAACTCGAATTAGTTTCTGGTAGTCCTGG
CCTACATATGTCATTTACTGGAAGTCCAGGTACAGGTAAAACTACTGTAG
CAATGAAAATGGCAGATATACTTCATAGACTTAATTATATTAGGAAAGGC
CATTTACTAACAGTAACAAGAGATGACTTAGTAGGACAATATATAGGTCA
TACTGCACCAAAAACCAAAGAAGTTCTGAAGCAAGCTATGGGAGGTGTGC
TTTTTATTGATGAAGCATATTATTTATATAAACCAGATAATGAAAGAGAT
TACGGTGCAGAAGCAATTGAAATTCTTTTACAAGTAATGGAAAATCAAAG
AGACGACTTAGTTGTTATATTTGCTGGCTATAAAGATAAAATGGACAAGT
TCTATGAATCTAATCCGGGACTTTCATCAAGAGTAACAAATCATGTAGAT
TTTCCGGATTATACTGCAGAAGAATTGTTAGAAATCGCTAAGTTGATGTT
AGAAGAACAGCAATATAAATTTGCAAGTGATGCAAATGAAGTTTTATTAG
ATTATGCAAATAGGAGAATGAAACAACCTCATTTCGCAAATGCTAGAAGC
ATTAGAAATGCTATAGATAGAGCAAGAATGAGACAAGCAAATCGAATTTT
TTTAAGCGGTGACAAAATTTTAACAAAAGCAGACTTAACCACTATTCAAT
CTGAAGATATATTAAAAAGTAGGTTATTTAATTAA
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protein sequence of Gvermi13680.t1

>Gvermi13680.t1 ID=Gvermi13680.t1|Name=Gvermi13680.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=295bp
MTTKQTTDTLLNLKEEYDKTKIQEILDELEQELIGLKPVKTRIKEIAALL
LIDRLRNQLELVSGSPGLHMSFTGSPGTGKTTVAMKMADILHRLNYIRKG
HLLTVTRDDLVGQYIGHTAPKTKEVLKQAMGGVLFIDEAYYLYKPDNERD
YGAEAIEILLQVMENQRDDLVVIFAGYKDKMDKFYESNPGLSSRVTNHVD
FPDYTAEELLEIAKLMLEEQQYKFASDANEVLLDYANRRMKQPHFANARS
IRNAIDRARMRQANRIFLSGDKILTKADLTTIQSEDILKSRLFN*
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mRNA from alignment at ScGOVlb_59:121112..121996+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13680.t1 ID=Gvermi13680.t1|Name=Gvermi13680.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_59:121112..121996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCACAAAACAAACAACAGACACTTTATTAAACTTAAAAGAAGAATA
CGATAAAACAAAAATACAAGAAATTCTTGACGAACTAGAACAAGAGCTTA
TAGGATTAAAACCTGTAAAAACAAGAATTAAAGAAATAGCTGCTCTACTA
CTGATAGATCGATTAAGAAATCAACTCGAATTAGTTTCTGGTAGTCCTGG
CCTACATATGTCATTTACTGGAAGTCCAGGTACAGGTAAAACTACTGTAG
CAATGAAAATGGCAGATATACTTCATAGACTTAATTATATTAGGAAAGGC
CATTTACTAACAGTAACAAGAGATGACTTAGTAGGACAATATATAGGTCA
TACTGCACCAAAAACCAAAGAAGTTCTGAAGCAAGCTATGGGAGGTGTGC
TTTTTATTGATGAAGCATATTATTTATATAAACCAGATAATGAAAGAGAT
TACGGTGCAGAAGCAATTGAAATTCTTTTACAAGTAATGGAAAATCAAAG
AGACGACTTAGTTGTTATATTTGCTGGCTATAAAGATAAAATGGACAAGT
TCTATGAATCTAATCCGGGACTTTCATCAAGAGTAACAAATCATGTAGAT
TTTCCGGATTATACTGCAGAAGAATTGTTAGAAATCGCTAAGTTGATGTT
AGAAGAACAGCAATATAAATTTGCAAGTGATGCAAATGAAGTTTTATTAG
ATTATGCAAATAGGAGAATGAAACAACCTCATTTCGCAAATGCTAGAAGC
ATTAGAAATGCTATAGATAGAGCAAGAATGAGACAAGCAAATCGAATTTT
TTTAAGCGGTGACAAAATTTTAACAAAAGCAGACTTAACCACTATTCAAT
CTGAAGATATATTAAAAAGTAGGTTATTTAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:121112..121996+

>Gvermi13680.t1 ID=Gvermi13680.t1|Name=Gvermi13680.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=885bp|location=Sequence derived from alignment at ScGOVlb_59:121112..121996+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCACAAAACAAACAACAGACACTTTATTAAACTTAAAAGAAGAATA
CGATAAAACAAAAATACAAGAAATTCTTGACGAACTAGAACAAGAGCTTA
TAGGATTAAAACCTGTAAAAACAAGAATTAAAGAAATAGCTGCTCTACTA
CTGATAGATCGATTAAGAAATCAACTCGAATTAGTTTCTGGTAGTCCTGG
CCTACATATGTCATTTACTGGAAGTCCAGGTACAGGTAAAACTACTGTAG
CAATGAAAATGGCAGATATACTTCATAGACTTAATTATATTAGGAAAGGC
CATTTACTAACAGTAACAAGAGATGACTTAGTAGGACAATATATAGGTCA
TACTGCACCAAAAACCAAAGAAGTTCTGAAGCAAGCTATGGGAGGTGTGC
TTTTTATTGATGAAGCATATTATTTATATAAACCAGATAATGAAAGAGAT
TACGGTGCAGAAGCAATTGAAATTCTTTTACAAGTAATGGAAAATCAAAG
AGACGACTTAGTTGTTATATTTGCTGGCTATAAAGATAAAATGGACAAGT
TCTATGAATCTAATCCGGGACTTTCATCAAGAGTAACAAATCATGTAGAT
TTTCCGGATTATACTGCAGAAGAATTGTTAGAAATCGCTAAGTTGATGTT
AGAAGAACAGCAATATAAATTTGCAAGTGATGCAAATGAAGTTTTATTAG
ATTATGCAAATAGGAGAATGAAACAACCTCATTTCGCAAATGCTAGAAGC
ATTAGAAATGCTATAGATAGAGCAAGAATGAGACAAGCAAATCGAATTTT
TTTAAGCGGTGACAAAATTTTAACAAAAGCAGACTTAACCACTATTCAAT
CTGAAGATATATTAAAAAGTAGGTTATTTAATTAA
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