Gvermi13679.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13679.t1
Unique NameGvermi13679.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:119125..120516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35639
Preferred namerbcL
PFAMsRuBisCO_large,RuBisCO_large_N
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00172,RC00253,RC00367,RC00859
KEGG koko:K01601,ko:K01963
KEGG ReactionR00024,R00742,R03140,R04386
KEGG Pathwayko00061,ko00620,ko00630,ko00640,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00630,map00640,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00165,M00166,M00376,M00532
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue2.44e-301
EggNOG OGsCOG1850@1|root,2QTI9@2759|Eukaryota
EC2.1.3.15,4.1.1.39,6.4.1.2
Descriptionribulose-bisphosphate carboxylase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13679Gvermi13679Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 119125..120516 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13679.t1.start1Gvermi13679.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 119125..119127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13679.t1.CDS1Gvermi13679.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 119125..120516 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13679.t1.exon1Gvermi13679.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 119125..120516 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13679.t1.stop1Gvermi13679.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 120514..120516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13679.t1Gvermi13679.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 119125..120516 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13679.t1 ID=Gvermi13679.t1|Name=Gvermi13679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp
MGYWDPNYVTKDTDVLALFRVTPQPGVDPVEASAAVAGESSTATWTVVWT
DLLTACDLYRAKAYKVDTVPNTSDQYFAYIAYDIDLFEEGSIANLTASII
GNVFGFKAVKALRLEDMRLPVAYLKTFQGPATGIVVERERMDKFGRPFLG
ATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYS
MEAVNRSIASTGEVKGHYMNITAATMEEMYERAEFGKQIGTIIVMIDLVI
GYTAIQTMAVWARKNDMILHLHRAGNSTYSRQKIHGMNFRVICKWMRMAG
VDHIHAGTVVGKLEGDPLMIKGFYNTLLETHLDINLPQGIFFQQDWASLR
KVAPVASGGIHCGQMHQLLDYLGNDVVLQFGGGTIGHPDGIQAGATANRV
ALESMVIARNEGRDYVAEGPQILRDAAKTCGPLQTALDLWKDITFNYTST
DTADFVETPTANV*
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spliced messenger RNA

>Gvermi13679.t1 ID=Gvermi13679.t1|Name=Gvermi13679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_59:119125..120516+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATACTGGGATCCTAACTATGTAACTAAAGATACAGACGTGTTAGC
ACTATTCAGGGTTACGCCTCAACCTGGTGTAGATCCAGTAGAAGCATCTG
CTGCTGTTGCAGGTGAATCTTCTACAGCTACATGGACTGTTGTTTGGACA
GATCTACTAACAGCTTGTGATCTTTATAGAGCTAAAGCATACAAAGTAGA
TACCGTACCTAATACTTCTGATCAATACTTTGCTTACATTGCATATGATA
TTGATCTATTTGAAGAAGGATCTATTGCTAATTTAACAGCTTCAATTATT
GGTAACGTATTCGGATTTAAAGCTGTAAAAGCTCTAAGACTAGAAGATAT
GCGTTTACCTGTAGCTTACTTGAAAACTTTCCAAGGACCTGCAACAGGAA
TTGTTGTAGAACGTGAACGTATGGATAAATTTGGTCGTCCGTTCCTAGGT
GCGACTGTTAAGCCAAAATTAGGTCTTTCTGGTAAAAACTACGGTAGAGT
AGTTTATGAAGGTCTAAGAGGAGGACTAGATTTCCTAAAAGATGATGAAA
ATATCAATTCACAACCTTTTATGCGTTGGAAGGAAAGATTTTTATATTCT
ATGGAAGCGGTTAATCGTTCAATTGCCTCAACTGGAGAAGTGAAAGGTCA
CTATATGAACATTACAGCTGCAACTATGGAAGAAATGTATGAAAGAGCTG
AATTTGGTAAACAAATTGGAACAATTATTGTAATGATCGATTTAGTAATT
GGTTATACAGCAATTCAAACAATGGCTGTTTGGGCTCGCAAAAATGACAT
GATTCTACATTTACACCGTGCTGGTAACTCAACTTACTCTCGTCAAAAAA
TTCATGGTATGAATTTCAGAGTTATATGCAAATGGATGAGAATGGCAGGA
GTAGATCATATCCACGCAGGTACTGTAGTAGGTAAACTAGAAGGTGACCC
TCTAATGATTAAAGGCTTCTATAACACTTTACTAGAAACTCATTTAGATA
TTAATCTTCCACAAGGTATATTCTTCCAACAAGATTGGGCATCTTTACGT
AAAGTAGCACCAGTAGCTTCAGGTGGTATACATTGTGGTCAAATGCATCA
ACTTCTAGATTACCTAGGAAATGATGTAGTTCTTCAGTTCGGTGGAGGTA
CTATTGGACATCCAGATGGTATTCAAGCAGGAGCAACAGCTAACCGTGTA
GCATTAGAATCAATGGTAATTGCACGTAATGAAGGTCGTGACTATGTAGC
AGAAGGTCCTCAAATTCTACGTGATGCAGCTAAAACATGTGGCCCACTAC
AAACAGCTTTAGACTTATGGAAAGATATCACATTTAACTATACTTCTACA
GACACAGCTGACTTCGTAGAAACTCCAACAGCTAATGTTTAA
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protein sequence of Gvermi13679.t1

>Gvermi13679.t1 ID=Gvermi13679.t1|Name=Gvermi13679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=464bp
MGYWDPNYVTKDTDVLALFRVTPQPGVDPVEASAAVAGESSTATWTVVWT
DLLTACDLYRAKAYKVDTVPNTSDQYFAYIAYDIDLFEEGSIANLTASII
GNVFGFKAVKALRLEDMRLPVAYLKTFQGPATGIVVERERMDKFGRPFLG
ATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYS
MEAVNRSIASTGEVKGHYMNITAATMEEMYERAEFGKQIGTIIVMIDLVI
GYTAIQTMAVWARKNDMILHLHRAGNSTYSRQKIHGMNFRVICKWMRMAG
VDHIHAGTVVGKLEGDPLMIKGFYNTLLETHLDINLPQGIFFQQDWASLR
KVAPVASGGIHCGQMHQLLDYLGNDVVLQFGGGTIGHPDGIQAGATANRV
ALESMVIARNEGRDYVAEGPQILRDAAKTCGPLQTALDLWKDITFNYTST
DTADFVETPTANV*
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mRNA from alignment at ScGOVlb_59:119125..120516+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13679.t1 ID=Gvermi13679.t1|Name=Gvermi13679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_59:119125..120516+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATACTGGGATCCTAACTATGTAACTAAAGATACAGACGTGTTAGC
ACTATTCAGGGTTACGCCTCAACCTGGTGTAGATCCAGTAGAAGCATCTG
CTGCTGTTGCAGGTGAATCTTCTACAGCTACATGGACTGTTGTTTGGACA
GATCTACTAACAGCTTGTGATCTTTATAGAGCTAAAGCATACAAAGTAGA
TACCGTACCTAATACTTCTGATCAATACTTTGCTTACATTGCATATGATA
TTGATCTATTTGAAGAAGGATCTATTGCTAATTTAACAGCTTCAATTATT
GGTAACGTATTCGGATTTAAAGCTGTAAAAGCTCTAAGACTAGAAGATAT
GCGTTTACCTGTAGCTTACTTGAAAACTTTCCAAGGACCTGCAACAGGAA
TTGTTGTAGAACGTGAACGTATGGATAAATTTGGTCGTCCGTTCCTAGGT
GCGACTGTTAAGCCAAAATTAGGTCTTTCTGGTAAAAACTACGGTAGAGT
AGTTTATGAAGGTCTAAGAGGAGGACTAGATTTCCTAAAAGATGATGAAA
ATATCAATTCACAACCTTTTATGCGTTGGAAGGAAAGATTTTTATATTCT
ATGGAAGCGGTTAATCGTTCAATTGCCTCAACTGGAGAAGTGAAAGGTCA
CTATATGAACATTACAGCTGCAACTATGGAAGAAATGTATGAAAGAGCTG
AATTTGGTAAACAAATTGGAACAATTATTGTAATGATCGATTTAGTAATT
GGTTATACAGCAATTCAAACAATGGCTGTTTGGGCTCGCAAAAATGACAT
GATTCTACATTTACACCGTGCTGGTAACTCAACTTACTCTCGTCAAAAAA
TTCATGGTATGAATTTCAGAGTTATATGCAAATGGATGAGAATGGCAGGA
GTAGATCATATCCACGCAGGTACTGTAGTAGGTAAACTAGAAGGTGACCC
TCTAATGATTAAAGGCTTCTATAACACTTTACTAGAAACTCATTTAGATA
TTAATCTTCCACAAGGTATATTCTTCCAACAAGATTGGGCATCTTTACGT
AAAGTAGCACCAGTAGCTTCAGGTGGTATACATTGTGGTCAAATGCATCA
ACTTCTAGATTACCTAGGAAATGATGTAGTTCTTCAGTTCGGTGGAGGTA
CTATTGGACATCCAGATGGTATTCAAGCAGGAGCAACAGCTAACCGTGTA
GCATTAGAATCAATGGTAATTGCACGTAATGAAGGTCGTGACTATGTAGC
AGAAGGTCCTCAAATTCTACGTGATGCAGCTAAAACATGTGGCCCACTAC
AAACAGCTTTAGACTTATGGAAAGATATCACATTTAACTATACTTCTACA
GACACAGCTGACTTCGTAGAAACTCCAACAGCTAATGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:119125..120516+

>Gvermi13679.t1 ID=Gvermi13679.t1|Name=Gvermi13679.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1392bp|location=Sequence derived from alignment at ScGOVlb_59:119125..120516+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGATACTGGGATCCTAACTATGTAACTAAAGATACAGACGTGTTAGC
ACTATTCAGGGTTACGCCTCAACCTGGTGTAGATCCAGTAGAAGCATCTG
CTGCTGTTGCAGGTGAATCTTCTACAGCTACATGGACTGTTGTTTGGACA
GATCTACTAACAGCTTGTGATCTTTATAGAGCTAAAGCATACAAAGTAGA
TACCGTACCTAATACTTCTGATCAATACTTTGCTTACATTGCATATGATA
TTGATCTATTTGAAGAAGGATCTATTGCTAATTTAACAGCTTCAATTATT
GGTAACGTATTCGGATTTAAAGCTGTAAAAGCTCTAAGACTAGAAGATAT
GCGTTTACCTGTAGCTTACTTGAAAACTTTCCAAGGACCTGCAACAGGAA
TTGTTGTAGAACGTGAACGTATGGATAAATTTGGTCGTCCGTTCCTAGGT
GCGACTGTTAAGCCAAAATTAGGTCTTTCTGGTAAAAACTACGGTAGAGT
AGTTTATGAAGGTCTAAGAGGAGGACTAGATTTCCTAAAAGATGATGAAA
ATATCAATTCACAACCTTTTATGCGTTGGAAGGAAAGATTTTTATATTCT
ATGGAAGCGGTTAATCGTTCAATTGCCTCAACTGGAGAAGTGAAAGGTCA
CTATATGAACATTACAGCTGCAACTATGGAAGAAATGTATGAAAGAGCTG
AATTTGGTAAACAAATTGGAACAATTATTGTAATGATCGATTTAGTAATT
GGTTATACAGCAATTCAAACAATGGCTGTTTGGGCTCGCAAAAATGACAT
GATTCTACATTTACACCGTGCTGGTAACTCAACTTACTCTCGTCAAAAAA
TTCATGGTATGAATTTCAGAGTTATATGCAAATGGATGAGAATGGCAGGA
GTAGATCATATCCACGCAGGTACTGTAGTAGGTAAACTAGAAGGTGACCC
TCTAATGATTAAAGGCTTCTATAACACTTTACTAGAAACTCATTTAGATA
TTAATCTTCCACAAGGTATATTCTTCCAACAAGATTGGGCATCTTTACGT
AAAGTAGCACCAGTAGCTTCAGGTGGTATACATTGTGGTCAAATGCATCA
ACTTCTAGATTACCTAGGAAATGATGTAGTTCTTCAGTTCGGTGGAGGTA
CTATTGGACATCCAGATGGTATTCAAGCAGGAGCAACAGCTAACCGTGTA
GCATTAGAATCAATGGTAATTGCACGTAATGAAGGTCGTGACTATGTAGC
AGAAGGTCCTCAAATTCTACGTGATGCAGCTAAAACATGTGGCCCACTAC
AAACAGCTTTAGACTTATGGAAAGATATCACATTTAACTATACTTCTACA
GACACAGCTGACTTCGTAGAAACTCCAACAGCTAATGTTTAA
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