Gvermi13678.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13678.t2
Unique NameGvermi13678.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:104775..107457 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173264.KI913949_gene2536
Preferred nameglsF
PFAMsGATase_2,GXGXG,Glu_syn_central,Glu_synthase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00006,RC00010
KEGG koko:K00284
KEGG ReactionR00021,R10086
KEGG Pathwayko00630,ko00910,ko01120,map00630,map00910,map01120
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0015930,GO:0016053,GO:0016491,GO:0016638,GO:0019676,GO:0019740,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue3.26e-178
EggNOG OGsCOG0067@1|root,COG0069@1|root,COG0070@1|root,COG0067@2|Bacteria,COG0069@2|Bacteria,COG0070@2|Bacteria,1G0XM@1117|Cyanobacteria,1H8GB@1150|Oscillatoriales
EC1.4.7.1
DescriptionPFAM Conserved region in glutamate synthase
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13678Gvermi13678Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 104775..107457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13678.t2Gvermi13678.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 104775..107457 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13678.t2.start1Gvermi13678.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 104775..104777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13678.t2.CDS1Gvermi13678.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 104775..106173 +
Gvermi13678.t2.CDS2Gvermi13678.t2.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 107234..107457 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13678.t2.exon1Gvermi13678.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 104775..106173 +
Gvermi13678.t2.exon2Gvermi13678.t2.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 107234..107457 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13678.t2.intron1Gvermi13678.t2.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 106174..107233 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13678.t2.stop1Gvermi13678.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 107455..107457 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13678.t2 ID=Gvermi13678.t2|Name=Gvermi13678.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=541bp
MRCIAHNGEINTLLGNLNWTKSREPLFQDGLWKNYSEELVPITNLFNSDS
ANLDSVVELLIQSGKDPEESLMILIPEAYHNQPSLNSSPEINDFYDFYAN
LQEPWDGPALVVFSDGRKVGATLDRNGLRPARYCITSDGIITLSSEAGII
DFSLDSILHKGRLGPGQMISVDLVNNIVLENLIIKKAVANKLPYGSWLSN
NQVLIENQPYNIESESSYLSQLSRLHTAYGYSNEDVELVIEHMASSAKEP
TFCMGDDIPLAVLSNKPHLVYDYFKQRFAQVTNPAIDPLRESLVMSLVTH
IGPKGNYLEPTENMAKSITISSPIINEQELELINSSIFKVYSVNTFFDLD
ASVTSFNSQINIICQQSVINIEEGAGIILLTDRSDKLTQNAIFIPPLLIV
GALHHYLIARGLRHKVSIIVETGQCWNTHHFACLIGYGASAICPYLAFLT
VRQWWHNTKTQKLMANAVEDQVAIIYAGVNGYLDNIELPKVSDFVLALRQ
DLKNSKPEFSESIRSTKKLTPESEDLLKQSIQDVQQTFVA*
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spliced messenger RNA

>Gvermi13678.t2 ID=Gvermi13678.t2|Name=Gvermi13678.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at ScGOVlb_59:104775..107457+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGATGTATAGCACACAATGGTGAAATTAATACTCTTCTTGGTAATTT
AAATTGGACCAAGTCTAGAGAACCTTTATTTCAAGATGGTTTATGGAAAA
ACTATTCTGAGGAACTAGTTCCAATTACAAATCTATTTAATAGTGATTCT
GCTAATTTAGATTCCGTTGTGGAGCTATTAATTCAGTCTGGTAAAGATCC
TGAAGAATCACTAATGATTCTTATTCCTGAGGCATATCATAATCAGCCAT
CATTAAATTCAAGTCCTGAGATCAATGATTTTTATGATTTTTATGCTAAT
TTACAAGAGCCTTGGGATGGTCCTGCCCTAGTTGTATTTAGTGATGGTAG
AAAAGTAGGTGCAACTTTAGATAGAAATGGATTGAGACCTGCTAGGTATT
GTATTACTTCGGATGGTATCATTACCCTATCATCTGAGGCAGGCATTATA
GATTTTAGTTTGGATAGTATTTTACATAAGGGGCGTTTGGGTCCTGGTCA
AATGATTTCTGTTGATTTAGTTAATAATATAGTCTTAGAAAATTTAATTA
TTAAAAAAGCTGTTGCTAATAAACTACCTTATGGTTCTTGGCTGTCTAAT
AACCAAGTATTAATTGAAAATCAACCATATAATATAGAAAGTGAGTCCAG
TTATCTCAGTCAATTATCTCGTTTACACACTGCTTATGGTTACTCTAATG
AAGATGTGGAGTTAGTTATAGAGCATATGGCAAGTTCTGCTAAAGAGCCA
ACTTTTTGTATGGGTGACGATATTCCTTTAGCTGTTTTATCTAATAAGCC
ACATCTGGTTTATGATTATTTTAAACAAAGGTTTGCACAGGTGACTAATC
CTGCTATTGATCCTTTGCGTGAAAGTTTAGTTATGTCATTGGTTACTCAT
ATCGGTCCTAAGGGTAATTATCTAGAACCCACTGAAAATATGGCTAAGTC
AATTACTATTAGTTCGCCTATTATTAACGAACAAGAATTGGAACTTATAA
ATAGTAGTATATTTAAAGTTTATTCTGTTAACACTTTTTTTGACTTAGAT
GCTTCAGTTACGAGTTTTAATAGTCAAATTAATATCATTTGTCAACAATC
TGTTATTAATATAGAAGAAGGAGCAGGTATAATTTTATTAACAGATCGCT
CAGATAAACTAACTCAAAATGCCATTTTTATACCTCCCCTTTTAATTGTA
GGAGCTCTACATCATTACCTTATTGCAAGAGGTTTAAGGCATAAGGTTTC
TATTATTGTTGAGACTGGTCAATGTTGGAATACACATCATTTTGCTTGTC
TTATAGGCTATGGTGCTAGTGCTATTTGCCCTTATTTAGCTTTTTTAACT
GTACGTCAATGGTGGCATAATACAAAAACCCAAAAATTAATGGCTAATGC
AGTTGAAGATCAAGTTGCTATTATATATGCTGGTGTTAATGGATATTTAG
ATAATATTGAGTTACCAAAAGTAAGCGATTTTGTTTTAGCTCTAAGGCAG
GATTTAAAAAATTCTAAGCCTGAATTTAGTGAAAGTATTCGCAGTACTAA
AAAATTAACACCGGAATCAGAAGATTTACTGAAACAATCAATACAAGATG
TACAGCAAACTTTTGTTGCTTAA
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protein sequence of Gvermi13678.t2

>Gvermi13678.t2 ID=Gvermi13678.t2|Name=Gvermi13678.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=541bp
MRCIAHNGEINTLLGNLNWTKSREPLFQDGLWKNYSEELVPITNLFNSDS
ANLDSVVELLIQSGKDPEESLMILIPEAYHNQPSLNSSPEINDFYDFYAN
LQEPWDGPALVVFSDGRKVGATLDRNGLRPARYCITSDGIITLSSEAGII
DFSLDSILHKGRLGPGQMISVDLVNNIVLENLIIKKAVANKLPYGSWLSN
NQVLIENQPYNIESESSYLSQLSRLHTAYGYSNEDVELVIEHMASSAKEP
TFCMGDDIPLAVLSNKPHLVYDYFKQRFAQVTNPAIDPLRESLVMSLVTH
IGPKGNYLEPTENMAKSITISSPIINEQELELINSSIFKVYSVNTFFDLD
ASVTSFNSQINIICQQSVINIEEGAGIILLTDRSDKLTQNAIFIPPLLIV
GALHHYLIARGLRHKVSIIVETGQCWNTHHFACLIGYGASAICPYLAFLT
VRQWWHNTKTQKLMANAVEDQVAIIYAGVNGYLDNIELPKVSDFVLALRQ
DLKNSKPEFSESIRSTKKLTPESEDLLKQSIQDVQQTFVA*
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mRNA from alignment at ScGOVlb_59:104775..107457+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13678.t2 ID=Gvermi13678.t2|Name=Gvermi13678.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2683bp|location=Sequence derived from alignment at ScGOVlb_59:104775..107457+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGATGTATAGCACACAATGGTGAAATTAATACTCTTCTTGGTAATTT
AAATTGGACCAAGTCTAGAGAACCTTTATTTCAAGATGGTTTATGGAAAA
ACTATTCTGAGGAACTAGTTCCAATTACAAATCTATTTAATAGTGATTCT
GCTAATTTAGATTCCGTTGTGGAGCTATTAATTCAGTCTGGTAAAGATCC
TGAAGAATCACTAATGATTCTTATTCCTGAGGCATATCATAATCAGCCAT
CATTAAATTCAAGTCCTGAGATCAATGATTTTTATGATTTTTATGCTAAT
TTACAAGAGCCTTGGGATGGTCCTGCCCTAGTTGTATTTAGTGATGGTAG
AAAAGTAGGTGCAACTTTAGATAGAAATGGATTGAGACCTGCTAGGTATT
GTATTACTTCGGATGGTATCATTACCCTATCATCTGAGGCAGGCATTATA
GATTTTAGTTTGGATAGTATTTTACATAAGGGGCGTTTGGGTCCTGGTCA
AATGATTTCTGTTGATTTAGTTAATAATATAGTCTTAGAAAATTTAATTA
TTAAAAAAGCTGTTGCTAATAAACTACCTTATGGTTCTTGGCTGTCTAAT
AACCAAGTATTAATTGAAAATCAACCATATAATATAGAAAGTGAGTCCAG
TTATCTCAGTCAATTATCTCGTTTACACACTGCTTATGGTTACTCTAATG
AAGATGTGGAGTTAGTTATAGAGCATATGGCAAGTTCTGCTAAAGAGCCA
ACTTTTTGTATGGGTGACGATATTCCTTTAGCTGTTTTATCTAATAAGCC
ACATCTGGTTTATGATTATTTTAAACAAAGGTTTGCACAGGTGACTAATC
CTGCTATTGATCCTTTGCGTGAAAGTTTAGTTATGTCATTGGTTACTCAT
ATCGGTCCTAAGGGTAATTATCTAGAACCCACTGAAAATATGGCTAAGTC
AATTACTATTAGTTCGCCTATTATTAACGAACAAGAATTGGAACTTATAA
ATAGTAGTATATTTAAAGTTTATTCTGTTAACACTTTTTTTGACTTAGAT
GCTTCAGTTACGAGTTTTAATAGTCAAATTAATATCATTTGTCAACAATC
TGTTATTAATATAGAAGAAGGAGCAGGTATAATTTTATTAACAGATCGCT
CAGATAAACTAACTCAAAATGCCATTTTTATACCTCCCCTTTTAATTGTA
GGAGCTCTACATCATTACCTTATTGCAAGAGGTTTAAGGCATAAGGTTTC
TATTATTGTTGAGACTGGTCAATGTTGGAATACACATCATTTTGCTTGTC
TTATAGGCTATGGTGCTAGTGCTATTTGCCCTTATTTAGCTTTTTTAACT
GTACGTCAATGGTGGCATAATACAAAAACCCAAAAATTAATGGCTAATGG
TAAGTTGCCTAAAATGAGTATTCAAGATGCTCAAGCTAATTATCGTAATG
CTATAGAAAAAGGTATTCTGAAGATATTATCTAAAATAGGTATCTGTTTA
ATTTCGAGTTATCATGGTGCACAAATTTTTGAAATATTAGGTTTAGGTAA
TGATATTGTAGATTTATGTTTTCTTAATACTACTTCTAGGCTTTCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAA
CTTCAGTTGCACTAGACACTATAATAAATCAGAAAGGTCAAGATGTAGTT
TGTGTTTATGTTGCTATAGGTCAAAAAGCTTCATCTGTTGCACAAGTAGT
ATCTACATTAGAAGAAAAAGGAGCCTTGGAATATACTATAATAGTTGCTG
CAAACGCCGACGATCCAgcaactcttcaatatatagcaccctatactggt
gctacattagcagagtattttatgtacaaaggtaaagcaactttggtaat
ttatgatgatttaactaaacaagctcaagcttaccgtcaaatgtcacttc
ttctacgtcgtccaccaggtagagaagcctatcctggcgatgttttttat
ttgcactctagattgttagaaagagctgctaaattaagtagtgcacttgg
ttcaggtagtatgactgctttgccaattattgaaacacaagctggtgatg
tatctgcttatattccaacaaatgtaatttctattactgacggtcagatc
tttttatctggtgatttatttaactcaggaattagacctgctataaatgt
tggtatttctgtatcaagagtgggttctgctgctcaaattaaagcaatga
aacaagttgctggtaagttgaagttagaactagCACAATTTGCAGAATTA
GAGGCATTTTCACAATTTGCTTCTGATCTAGATAAAGCAACTCAAAACCA
ACTTGCCCGTGGACAAAGACTTAGGGAAATATTAAAACAAGCACAAAATT
CCCCATTAGCAGTTGAAGATCAAGTTGCTATTATATATGCTGGTGTTAAT
GGATATTTAGATAATATTGAGTTACCAAAAGTAAGCGATTTTGTTTTAGC
TCTAAGGCAGGATTTAAAAAATTCTAAGCCTGAATTTAGTGAAAGTATTC
GCAGTACTAAAAAATTAACACCGGAATCAGAAGATTTACTGAAACAATCA
ATACAAGATGTACAGCAAACTTTTGTTGCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:104775..107457+

>Gvermi13678.t2 ID=Gvermi13678.t2|Name=Gvermi13678.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1623bp|location=Sequence derived from alignment at ScGOVlb_59:104775..107457+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGATGTATAGCACACAATGGTGAAATTAATACTCTTCTTGGTAATTT
AAATTGGACCAAGTCTAGAGAACCTTTATTTCAAGATGGTTTATGGAAAA
ACTATTCTGAGGAACTAGTTCCAATTACAAATCTATTTAATAGTGATTCT
GCTAATTTAGATTCCGTTGTGGAGCTATTAATTCAGTCTGGTAAAGATCC
TGAAGAATCACTAATGATTCTTATTCCTGAGGCATATCATAATCAGCCAT
CATTAAATTCAAGTCCTGAGATCAATGATTTTTATGATTTTTATGCTAAT
TTACAAGAGCCTTGGGATGGTCCTGCCCTAGTTGTATTTAGTGATGGTAG
AAAAGTAGGTGCAACTTTAGATAGAAATGGATTGAGACCTGCTAGGTATT
GTATTACTTCGGATGGTATCATTACCCTATCATCTGAGGCAGGCATTATA
GATTTTAGTTTGGATAGTATTTTACATAAGGGGCGTTTGGGTCCTGGTCA
AATGATTTCTGTTGATTTAGTTAATAATATAGTCTTAGAAAATTTAATTA
TTAAAAAAGCTGTTGCTAATAAACTACCTTATGGTTCTTGGCTGTCTAAT
AACCAAGTATTAATTGAAAATCAACCATATAATATAGAAAGTGAGTCCAG
TTATCTCAGTCAATTATCTCGTTTACACACTGCTTATGGTTACTCTAATG
AAGATGTGGAGTTAGTTATAGAGCATATGGCAAGTTCTGCTAAAGAGCCA
ACTTTTTGTATGGGTGACGATATTCCTTTAGCTGTTTTATCTAATAAGCC
ACATCTGGTTTATGATTATTTTAAACAAAGGTTTGCACAGGTGACTAATC
CTGCTATTGATCCTTTGCGTGAAAGTTTAGTTATGTCATTGGTTACTCAT
ATCGGTCCTAAGGGTAATTATCTAGAACCCACTGAAAATATGGCTAAGTC
AATTACTATTAGTTCGCCTATTATTAACGAACAAGAATTGGAACTTATAA
ATAGTAGTATATTTAAAGTTTATTCTGTTAACACTTTTTTTGACTTAGAT
GCTTCAGTTACGAGTTTTAATAGTCAAATTAATATCATTTGTCAACAATC
TGTTATTAATATAGAAGAAGGAGCAGGTATAATTTTATTAACAGATCGCT
CAGATAAACTAACTCAAAATGCCATTTTTATACCTCCCCTTTTAATTGTA
GGAGCTCTACATCATTACCTTATTGCAAGAGGTTTAAGGCATAAGGTTTC
TATTATTGTTGAGACTGGTCAATGTTGGAATACACATCATTTTGCTTGTC
TTATAGGCTATGGTGCTAGTGCTATTTGCCCTTATTTAGCTTTTTTAACT
GTACGTCAATGGTGGCATAATACAAAAACCCAAAAATTAATGGCTAATGC
AGTTGAAGATCAAGTTGCTATTATATATGCTGGTGTTAATGGATATTTAG
ATAATATTGAGTTACCAAAAGTAAGCGATTTTGTTTTAGCTCTAAGGCAG
GATTTAAAAAATTCTAAGCCTGAATTTAGTGAAAGTATTCGCAGTACTAA
AAAATTAACACCGGAATCAGAAGATTTACTGAAACAATCAATACAAGATG
TACAGCAAACTTTTGTTGCTTAA
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