Gvermi13677.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13677.t1
Unique Name	Gvermi13677.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	271

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:97780..98592 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	927677.ALVU02000001_gene3360
Preferred name	trpA
PFAMs	Trp_syntA
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00209,RC00210,RC00700,RC00701,RC02868
KEGG ko	ko:K01695
KEGG Reaction	R00674,R02340,R02722
KEGG Pathway	ko00260,ko00400,ko01100,ko01110,ko01130,ko01230,map00260,map00400,map01100,map01110,map01130,map01230
KEGG Module	M00023
Evalue	7.77e-67
EggNOG OGs	COG0159@1\|root,COG0159@2\|Bacteria,1G10Z@1117\|Cyanobacteria,1H58K@1142\|Synechocystis
EC	4.2.1.20
Description	The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13677	Gvermi13677	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 97780..98592 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13677.t1.start1	Gvermi13677.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 97780..97782 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13677.t1.CDS1	Gvermi13677.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 97780..98592 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13677.t1.exon1	Gvermi13677.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 97780..98592 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13677.t1.stop1	Gvermi13677.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 98590..98592 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13677.t1	Gvermi13677.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 97780..98592 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:97780..98592+
coding sequence from alignment at ScGOVlb_59:97780..98592+

mRNA sequence

>Gvermi13677.t1 ID=Gvermi13677.t1|Name=Gvermi13677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=271bp
MNHISSILKNNYQKSVCSFIPFITAGYPNIDLTLDALVELDKQGADAIEL
GVPYSDALADGPLIQEASKVSIQNGTNLSSVFTILKKVNGVINTPIIIFT
YYNPILVRGIKSFITEIAILGAKGLIIPDLPLEESVYVNYLCKMSNIELI
LFISPTSSDERILDIVNKSSGCLYLVSSTGVTGIRDTIDKSINRISNDIL
IDSGKMVILGFGIAYPDHIKQIMKSNISINGFVVGSAFTRILSTYIYSGN
KNVINDIGRFCAQMKSATLK*

spliced messenger RNA

>Gvermi13677.t1 ID=Gvermi13677.t1|Name=Gvermi13677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_59:97780..98592+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCACATTTCTAGTATATTAAAAAATAATTACCAAAAGTCTGTTTG
CTCATTTATCCCATTTATTACGGCTGGTTATCCAAATATTGATTTAACAT
TAGATGCTTTAGTAGAACTTGATAAACAAGGTGCTGATGCTATTGAGCTT
GGTGTACCATACTCTGATGCTTTAGCTGATGGTCCTTTAATTCAAGAGGC
ATCTAAAGTTTCTATACAAAATGGAACAAATTTGTCTAGTGTTTTTACTA
TATTAAAAAAGGTTAATGGTGTAATTAATACACCTATTATTATTTTTACT
TACTATAACCCAATCTTAGTTAGAGGTATTAAGTCATTTATTACTGAAAT
TGCAATTCTTGGAGCAAAAGGGCTTATTATACCTGATTTACCTTTAGAAG
AATCAGTTTACGTTAACTATTTATGTAAAATGAGTAATATAGAACTTATA
CTCTTTATTTCGCCCACTAGTTCTGATGAAAGAATCTTAGATATTGTAAA
TAAATCTAGTGGTTGTTTGTATTTAGTAAGTAGTACAGGTGTGACTGGTA
TAAGAGATACTATAGACAAGAGTATTAATAGGATTTCCAATGATATTTTG
ATAGATAGTGGTAAGATGGTTATTCTTGGTTTTGGTATAGCTTACCCAGA
TCATATAAAGCAAATTATGAAATCAAATATAAGTATTAATGGTTTTGTTG
TAGGAAGTGCTTTCACACGAATTTTGTCTACATATATATATAGTGGTAAC
AAAAATGTTATTAATGATATTGGTAGGTTTTGTGCTCAAATGAAGTCTGC
TACTTTAAAATAG

protein sequence of Gvermi13677.t1

>Gvermi13677.t1 ID=Gvermi13677.t1|Name=Gvermi13677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=271bp
MNHISSILKNNYQKSVCSFIPFITAGYPNIDLTLDALVELDKQGADAIEL
GVPYSDALADGPLIQEASKVSIQNGTNLSSVFTILKKVNGVINTPIIIFT
YYNPILVRGIKSFITEIAILGAKGLIIPDLPLEESVYVNYLCKMSNIELI
LFISPTSSDERILDIVNKSSGCLYLVSSTGVTGIRDTIDKSINRISNDIL
IDSGKMVILGFGIAYPDHIKQIMKSNISINGFVVGSAFTRILSTYIYSGN
KNVINDIGRFCAQMKSATLK*

mRNA from alignment at ScGOVlb_59:97780..98592+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13677.t1 ID=Gvermi13677.t1|Name=Gvermi13677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=813bp|location=Sequence derived from alignment at ScGOVlb_59:97780..98592+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCACATTTCTAGTATATTAAAAAATAATTACCAAAAGTCTGTTTG
CTCATTTATCCCATTTATTACGGCTGGTTATCCAAATATTGATTTAACAT
TAGATGCTTTAGTAGAACTTGATAAACAAGGTGCTGATGCTATTGAGCTT
GGTGTACCATACTCTGATGCTTTAGCTGATGGTCCTTTAATTCAAGAGGC
ATCTAAAGTTTCTATACAAAATGGAACAAATTTGTCTAGTGTTTTTACTA
TATTAAAAAAGGTTAATGGTGTAATTAATACACCTATTATTATTTTTACT
TACTATAACCCAATCTTAGTTAGAGGTATTAAGTCATTTATTACTGAAAT
TGCAATTCTTGGAGCAAAAGGGCTTATTATACCTGATTTACCTTTAGAAG
AATCAGTTTACGTTAACTATTTATGTAAAATGAGTAATATAGAACTTATA
CTCTTTATTTCGCCCACTAGTTCTGATGAAAGAATCTTAGATATTGTAAA
TAAATCTAGTGGTTGTTTGTATTTAGTAAGTAGTACAGGTGTGACTGGTA
TAAGAGATACTATAGACAAGAGTATTAATAGGATTTCCAATGATATTTTG
ATAGATAGTGGTAAGATGGTTATTCTTGGTTTTGGTATAGCTTACCCAGA
TCATATAAAGCAAATTATGAAATCAAATATAAGTATTAATGGTTTTGTTG
TAGGAAGTGCTTTCACACGAATTTTGTCTACATATATATATAGTGGTAAC
AAAAATGTTATTAATGATATTGGTAGGTTTTGTGCTCAAATGAAGTCTGC
TACTTTAAAATAG

Coding sequence (CDS) from alignment at ScGOVlb_59:97780..98592+

>Gvermi13677.t1 ID=Gvermi13677.t1|Name=Gvermi13677.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=813bp|location=Sequence derived from alignment at ScGOVlb_59:97780..98592+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATCACATTTCTAGTATATTAAAAAATAATTACCAAAAGTCTGTTTG
CTCATTTATCCCATTTATTACGGCTGGTTATCCAAATATTGATTTAACAT
TAGATGCTTTAGTAGAACTTGATAAACAAGGTGCTGATGCTATTGAGCTT
GGTGTACCATACTCTGATGCTTTAGCTGATGGTCCTTTAATTCAAGAGGC
ATCTAAAGTTTCTATACAAAATGGAACAAATTTGTCTAGTGTTTTTACTA
TATTAAAAAAGGTTAATGGTGTAATTAATACACCTATTATTATTTTTACT
TACTATAACCCAATCTTAGTTAGAGGTATTAAGTCATTTATTACTGAAAT
TGCAATTCTTGGAGCAAAAGGGCTTATTATACCTGATTTACCTTTAGAAG
AATCAGTTTACGTTAACTATTTATGTAAAATGAGTAATATAGAACTTATA
CTCTTTATTTCGCCCACTAGTTCTGATGAAAGAATCTTAGATATTGTAAA
TAAATCTAGTGGTTGTTTGTATTTAGTAAGTAGTACAGGTGTGACTGGTA
TAAGAGATACTATAGACAAGAGTATTAATAGGATTTCCAATGATATTTTG
ATAGATAGTGGTAAGATGGTTATTCTTGGTTTTGGTATAGCTTACCCAGA
TCATATAAAGCAAATTATGAAATCAAATATAAGTATTAATGGTTTTGTTG
TAGGAAGTGCTTTCACACGAATTTTGTCTACATATATATATAGTGGTAAC
AAAAATGTTATTAATGATATTGGTAGGTTTTGTGCTCAAATGAAGTCTGC
TACTTTAAAATAG