Gvermi13676.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13676.t1
Unique NameGvermi13676.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length328
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:92653..93636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thapsdraft980
PFAMsMg_chelatase
Max annot lvl2836|Bacillariophyta
Evalue1.75e-170
EggNOG OGsCOG1239@1|root,2QRUY@2759|Eukaryota,2XEQ7@2836|Bacillariophyta
DescriptionInvolved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13676Gvermi13676Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 92653..93636 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13676.t1.start1Gvermi13676.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 92653..92655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13676.t1.CDS1Gvermi13676.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 92653..93636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13676.t1.exon1Gvermi13676.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 92653..93636 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13676.t1.stop1Gvermi13676.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 93634..93636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13676.t1Gvermi13676.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 92653..93636 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13676.t1 ID=Gvermi13676.t1|Name=Gvermi13676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=328bp
MKLALILNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPEIEVVTDDCFN
SHVSDYDLMSDSVKKQIENNINLNTHSIKVPMIDLPLGATEDRLCGTIDI
EKALNEGIKSFDPGLLAKANRGILYVDEVNLLDDHLVDILLDAAASGWNT
VEREGISIRHPSRFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVRDASLR
VQIVEQRASFDQDPYACINDFKDQQDTLKSTIINAQSLLKNIAIDYGLKV
KISQICGLLNVDGLRGDIVTNRAARAFAAYQNKEEVDIDDVKQVITLCLR
HRLRKDPLDTIDSGTKVKQVVDEVLDN*
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spliced messenger RNA

>Gvermi13676.t1 ID=Gvermi13676.t1|Name=Gvermi13676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_59:92653..93636+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTAGCCCTAATATTGAATGTAATTGATCCTAAAATTGGTGGTGT
AATGATTATGGGTGATCGTGGTACGGGCAAATCCACGACTATTAGAGCAA
TAGCTGATTTGTTACCTGAAATCGAAGTGGTTACAGATGATTGTTTTAAT
TCCCATGTTTCTGATTACGATTTAATGTCTGATTCTGTAAAAAAACAAAT
AGAAAATAATATTAATCTTAATACTCATTCAATCAAGGTACCGATGATAG
ACCTACCTTTAGGTGCAACCGAAGATAGGTTATGTGGAACAATTGATATA
GAGAAGGCTTTAAATGAGGGAATTAAAAGTTTTGATCCAGGATTATTAGC
TAAAGCAAATAGAGGAATTTTATATGTAGATGAAGTTAATTTATTAGATG
ATCATTTAGTTGATATCTTGCTTGATGCTGCTGCATCTGGATGGAATACT
GTTGAAAGAGAAGGTATTTCAATAAGGCATCCATCTAGGTTTGTTTTAGT
TGGCTCAGGTAATCCAGAAGAAGGTGAATTAAGACCTCAATTACTTGATC
GTTTTGGTATGCATGCTGAAATTAGAACGGTTCGTGATGCATCTTTGCGA
GTACAAATTGTTGAACAAAGAGCTAGTTTTGATCAAGATCCTTATGCTTG
TATCAATGACTTTAAAGATCAACAAGATACTTTGAAAAGTACAATAATAA
ATGCTCAATCTCTACTGAAAAATATTGCAATAGACTATGGTCTTAAAGTT
AAGATTTCTCAGATTTGTGGTTTATTGAACGTAGATGGTTTACGCGGTGA
TATTGTAACTAATCGTGCTGCGAGGGCTTTTGCTGCTTATCAAAATAAGG
AAGAAGTCGATATCGATGATGTAAAGCAAGTTATAACTCTGTGTTTACGC
CACAGATTGCGTAAAGATCCACTAGATACTATAGACTCTGGAACAAAAGT
TAAGCAAGTTGTTGATGAAGTTTTAGATAATTAA
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protein sequence of Gvermi13676.t1

>Gvermi13676.t1 ID=Gvermi13676.t1|Name=Gvermi13676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=328bp
MKLALILNVIDPKIGGVMIMGDRGTGKSTTIRAIADLLPEIEVVTDDCFN
SHVSDYDLMSDSVKKQIENNINLNTHSIKVPMIDLPLGATEDRLCGTIDI
EKALNEGIKSFDPGLLAKANRGILYVDEVNLLDDHLVDILLDAAASGWNT
VEREGISIRHPSRFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVRDASLR
VQIVEQRASFDQDPYACINDFKDQQDTLKSTIINAQSLLKNIAIDYGLKV
KISQICGLLNVDGLRGDIVTNRAARAFAAYQNKEEVDIDDVKQVITLCLR
HRLRKDPLDTIDSGTKVKQVVDEVLDN*
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mRNA from alignment at ScGOVlb_59:92653..93636+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13676.t1 ID=Gvermi13676.t1|Name=Gvermi13676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=984bp|location=Sequence derived from alignment at ScGOVlb_59:92653..93636+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTAGCCCTAATATTGAATGTAATTGATCCTAAAATTGGTGGTGT
AATGATTATGGGTGATCGTGGTACGGGCAAATCCACGACTATTAGAGCAA
TAGCTGATTTGTTACCTGAAATCGAAGTGGTTACAGATGATTGTTTTAAT
TCCCATGTTTCTGATTACGATTTAATGTCTGATTCTGTAAAAAAACAAAT
AGAAAATAATATTAATCTTAATACTCATTCAATCAAGGTACCGATGATAG
ACCTACCTTTAGGTGCAACCGAAGATAGGTTATGTGGAACAATTGATATA
GAGAAGGCTTTAAATGAGGGAATTAAAAGTTTTGATCCAGGATTATTAGC
TAAAGCAAATAGAGGAATTTTATATGTAGATGAAGTTAATTTATTAGATG
ATCATTTAGTTGATATCTTGCTTGATGCTGCTGCATCTGGATGGAATACT
GTTGAAAGAGAAGGTATTTCAATAAGGCATCCATCTAGGTTTGTTTTAGT
TGGCTCAGGTAATCCAGAAGAAGGTGAATTAAGACCTCAATTACTTGATC
GTTTTGGTATGCATGCTGAAATTAGAACGGTTCGTGATGCATCTTTGCGA
GTACAAATTGTTGAACAAAGAGCTAGTTTTGATCAAGATCCTTATGCTTG
TATCAATGACTTTAAAGATCAACAAGATACTTTGAAAAGTACAATAATAA
ATGCTCAATCTCTACTGAAAAATATTGCAATAGACTATGGTCTTAAAGTT
AAGATTTCTCAGATTTGTGGTTTATTGAACGTAGATGGTTTACGCGGTGA
TATTGTAACTAATCGTGCTGCGAGGGCTTTTGCTGCTTATCAAAATAAGG
AAGAAGTCGATATCGATGATGTAAAGCAAGTTATAACTCTGTGTTTACGC
CACAGATTGCGTAAAGATCCACTAGATACTATAGACTCTGGAACAAAAGT
TAAGCAAGTTGTTGATGAAGTTTTAGATAATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:92653..93636+

>Gvermi13676.t1 ID=Gvermi13676.t1|Name=Gvermi13676.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=984bp|location=Sequence derived from alignment at ScGOVlb_59:92653..93636+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTAGCCCTAATATTGAATGTAATTGATCCTAAAATTGGTGGTGT
AATGATTATGGGTGATCGTGGTACGGGCAAATCCACGACTATTAGAGCAA
TAGCTGATTTGTTACCTGAAATCGAAGTGGTTACAGATGATTGTTTTAAT
TCCCATGTTTCTGATTACGATTTAATGTCTGATTCTGTAAAAAAACAAAT
AGAAAATAATATTAATCTTAATACTCATTCAATCAAGGTACCGATGATAG
ACCTACCTTTAGGTGCAACCGAAGATAGGTTATGTGGAACAATTGATATA
GAGAAGGCTTTAAATGAGGGAATTAAAAGTTTTGATCCAGGATTATTAGC
TAAAGCAAATAGAGGAATTTTATATGTAGATGAAGTTAATTTATTAGATG
ATCATTTAGTTGATATCTTGCTTGATGCTGCTGCATCTGGATGGAATACT
GTTGAAAGAGAAGGTATTTCAATAAGGCATCCATCTAGGTTTGTTTTAGT
TGGCTCAGGTAATCCAGAAGAAGGTGAATTAAGACCTCAATTACTTGATC
GTTTTGGTATGCATGCTGAAATTAGAACGGTTCGTGATGCATCTTTGCGA
GTACAAATTGTTGAACAAAGAGCTAGTTTTGATCAAGATCCTTATGCTTG
TATCAATGACTTTAAAGATCAACAAGATACTTTGAAAAGTACAATAATAA
ATGCTCAATCTCTACTGAAAAATATTGCAATAGACTATGGTCTTAAAGTT
AAGATTTCTCAGATTTGTGGTTTATTGAACGTAGATGGTTTACGCGGTGA
TATTGTAACTAATCGTGCTGCGAGGGCTTTTGCTGCTTATCAAAATAAGG
AAGAAGTCGATATCGATGATGTAAAGCAAGTTATAACTCTGTGTTTACGC
CACAGATTGCGTAAAGATCCACTAGATACTATAGACTCTGGAACAAAAGT
TAAGCAAGTTGTTGATGAAGTTTTAGATAATTAA
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