Gvermi13675.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13675.t1
Unique NameGvermi13675.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:85498..86472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35633
Preferred namepsbA
PFAMsPhoto_RC
Max annot lvl2759|Eukaryota
KEGG koko:K02703
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue1.61e-220
EggNOG OGs28IP8@1|root,2QR09@2759|Eukaryota
EC1.10.3.9
Descriptionelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13675Gvermi13675Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 85498..86472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13675.t1.stop1Gvermi13675.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 85498..85500 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13675.t1.CDS1Gvermi13675.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 85498..86472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13675.t1.exon1Gvermi13675.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 85498..86472 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13675.t1.start1Gvermi13675.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 86470..86472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13675.t1Gvermi13675.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 85498..86472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13675.t1 ID=Gvermi13675.t1|Name=Gvermi13675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=325bp
MIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSS
AAIGIHFYPIWEAASLDEWLYNGGPYQLIVLHFLLGVLCYIGREWELSYR
LGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGISGTFNFMLVF
QAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANNG
YKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVLGIWFT
AMSVSTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGMEVMHERNA
HNFPLDLASQESLPLALVAPSVNG*
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spliced messenger RNA

>Gvermi13675.t1 ID=Gvermi13675.t1|Name=Gvermi13675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_59:85498..86472- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCAACATTATTAACTGCTACATCTGTATTCATCATTGCATTCGT
TGCTGCACCTCCTGTAGATATCGACGGCATCCGCGAACCAGTAGCTGGTT
CTTTACTATACGGAAACAACATCATATCTGGTGCTGTAATTCCAAGTTCT
GCAGCGATTGGTATTCACTTCTACCCTATCTGGGAAGCTGCATCTTTAGA
TGAGTGGCTTTATAACGGTGGTCCTTACCAATTGATCGTACTTCACTTCC
TATTAGGCGTACTATGCTATATTGGTCGTGAATGGGAACTAAGCTATCGC
TTAGGTATGCGTCCTTGGATATCAGTTGCTTTCACAGCACCTGTAGCTGC
TGCAGCAGCTGTTTTCCTTGTTTACCCAATCGGTCAAGGAAGCTTCTCTG
ATGGTATGCCTCTTGGTATCTCTGGTACATTTAACTTCATGCTTGTATTC
CAAGCTGAGCACAATATTCTAATGCACCCTTTTCACCAACTAGGTGTTGC
AGGTGTATTTGGAGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAA
CTTCAAGTTTAATTCGTGAAACAACTGAAAATGAATCAGCAAATAACGGA
TACAAATTCGGTCAAGAAGAAGAAACTTATAACATCGTTGCAGCTCACGG
CTACTTCGGTCGCTTAATTTTCCAATATGCAAGTTTCAACAACTCTCGTG
CATTACATTTCTTCTTAGGACTATGGCCAGTACTAGGCATATGGTTCACA
GCTATGTCTGTAAGTACAATGGCTTTCAACTTAAATGGATTTAACTTCAA
CCAATCAGTTGTTGATAGTCAAGGTCGTGTAATCAACACTTGGGCTGATA
TCTTAAACAGAGCAAACTTAGGTATGGAAGTAATGCATGAGCGTAATGCT
CATAACTTCCCTCTAGATTTAGCTTCTCAAGAATCTTTACCTCTTGCTTT
AGTTGCACCTTCTGTTAACGGCTAA
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protein sequence of Gvermi13675.t1

>Gvermi13675.t1 ID=Gvermi13675.t1|Name=Gvermi13675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=325bp
MIPTLLTATSVFIIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSS
AAIGIHFYPIWEAASLDEWLYNGGPYQLIVLHFLLGVLCYIGREWELSYR
LGMRPWISVAFTAPVAAAAAVFLVYPIGQGSFSDGMPLGISGTFNFMLVF
QAEHNILMHPFHQLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANNG
YKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGLWPVLGIWFT
AMSVSTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGMEVMHERNA
HNFPLDLASQESLPLALVAPSVNG*
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mRNA from alignment at ScGOVlb_59:85498..86472-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13675.t1 ID=Gvermi13675.t1|Name=Gvermi13675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_59:85498..86472- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCCAACATTATTAACTGCTACATCTGTATTCATCATTGCATTCGT
TGCTGCACCTCCTGTAGATATCGACGGCATCCGCGAACCAGTAGCTGGTT
CTTTACTATACGGAAACAACATCATATCTGGTGCTGTAATTCCAAGTTCT
GCAGCGATTGGTATTCACTTCTACCCTATCTGGGAAGCTGCATCTTTAGA
TGAGTGGCTTTATAACGGTGGTCCTTACCAATTGATCGTACTTCACTTCC
TATTAGGCGTACTATGCTATATTGGTCGTGAATGGGAACTAAGCTATCGC
TTAGGTATGCGTCCTTGGATATCAGTTGCTTTCACAGCACCTGTAGCTGC
TGCAGCAGCTGTTTTCCTTGTTTACCCAATCGGTCAAGGAAGCTTCTCTG
ATGGTATGCCTCTTGGTATCTCTGGTACATTTAACTTCATGCTTGTATTC
CAAGCTGAGCACAATATTCTAATGCACCCTTTTCACCAACTAGGTGTTGC
AGGTGTATTTGGAGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAA
CTTCAAGTTTAATTCGTGAAACAACTGAAAATGAATCAGCAAATAACGGA
TACAAATTCGGTCAAGAAGAAGAAACTTATAACATCGTTGCAGCTCACGG
CTACTTCGGTCGCTTAATTTTCCAATATGCAAGTTTCAACAACTCTCGTG
CATTACATTTCTTCTTAGGACTATGGCCAGTACTAGGCATATGGTTCACA
GCTATGTCTGTAAGTACAATGGCTTTCAACTTAAATGGATTTAACTTCAA
CCAATCAGTTGTTGATAGTCAAGGTCGTGTAATCAACACTTGGGCTGATA
TCTTAAACAGAGCAAACTTAGGTATGGAAGTAATGCATGAGCGTAATGCT
CATAACTTCCCTCTAGATTTAGCTTCTCAAGAATCTTTACCTCTTGCTTT
AGTTGCACCTTCTGTTAACGGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:85498..86472-

>Gvermi13675.t1 ID=Gvermi13675.t1|Name=Gvermi13675.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=975bp|location=Sequence derived from alignment at ScGOVlb_59:85498..86472- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCCAACATTATTAACTGCTACATCTGTATTCATCATTGCATTCGT
TGCTGCACCTCCTGTAGATATCGACGGCATCCGCGAACCAGTAGCTGGTT
CTTTACTATACGGAAACAACATCATATCTGGTGCTGTAATTCCAAGTTCT
GCAGCGATTGGTATTCACTTCTACCCTATCTGGGAAGCTGCATCTTTAGA
TGAGTGGCTTTATAACGGTGGTCCTTACCAATTGATCGTACTTCACTTCC
TATTAGGCGTACTATGCTATATTGGTCGTGAATGGGAACTAAGCTATCGC
TTAGGTATGCGTCCTTGGATATCAGTTGCTTTCACAGCACCTGTAGCTGC
TGCAGCAGCTGTTTTCCTTGTTTACCCAATCGGTCAAGGAAGCTTCTCTG
ATGGTATGCCTCTTGGTATCTCTGGTACATTTAACTTCATGCTTGTATTC
CAAGCTGAGCACAATATTCTAATGCACCCTTTTCACCAACTAGGTGTTGC
AGGTGTATTTGGAGGATCTTTATTCAGTGCTATGCACGGTTCTCTTGTAA
CTTCAAGTTTAATTCGTGAAACAACTGAAAATGAATCAGCAAATAACGGA
TACAAATTCGGTCAAGAAGAAGAAACTTATAACATCGTTGCAGCTCACGG
CTACTTCGGTCGCTTAATTTTCCAATATGCAAGTTTCAACAACTCTCGTG
CATTACATTTCTTCTTAGGACTATGGCCAGTACTAGGCATATGGTTCACA
GCTATGTCTGTAAGTACAATGGCTTTCAACTTAAATGGATTTAACTTCAA
CCAATCAGTTGTTGATAGTCAAGGTCGTGTAATCAACACTTGGGCTGATA
TCTTAAACAGAGCAAACTTAGGTATGGAAGTAATGCATGAGCGTAATGCT
CATAACTTCCCTCTAGATTTAGCTTCTCAAGAATCTTTACCTCTTGCTTT
AGTTGCACCTTCTGTTAACGGCTAA
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