Gvermi13674.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13674.t1
Unique Name	Gvermi13674.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:74128..75129 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	211165.AJLN01000110_gene72
Preferred name	fabH
PFAMs	ACP_syn_III,ACP_syn_III_C
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00004,RC02729,RC02888
KEGG ko	ko:K00648
KEGG Reaction	R10707
KEGG Pathway	ko00061,ko01100,ko01212,map00061,map01100,map01212
KEGG Module	M00082,M00083
Evalue	3.52e-120
EggNOG OGs	COG0332@1\|root,COG0332@2\|Bacteria,1G0XJ@1117\|Cyanobacteria,1JHY5@1189\|Stigonemataceae
EC	2.3.1.180
Description	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13674	Gvermi13674	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 74128..75129 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13674.t1.start1	Gvermi13674.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 74128..74130 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13674.t1.CDS1	Gvermi13674.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 74128..75129 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13674.t1.exon1	Gvermi13674.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 74128..75129 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13674.t1.stop1	Gvermi13674.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 75127..75129 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13674.t1	Gvermi13674.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 74128..75129 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:74128..75129+
coding sequence from alignment at ScGOVlb_59:74128..75129+

mRNA sequence

>Gvermi13674.t1 ID=Gvermi13674.t1|Name=Gvermi13674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=334bp
MKKDMFQGAKIISTGSSIPCAKVSNEQISSIVETSDEWIFTRTGIKERRL
LTQYGQSIVELASEASIKAIEQISMDPKNIDLLILATSSPNDLFGSASKI
QYAIGATNAFAFDLTAACSGFVVSLVTAFQFIRNGSYKNILIIGADVLSK
WVDWSDRSTCILFGDAAGAVILQSCDVSFNSILNFHLKTDGKYANYLSIA
YKENFDPHPVLKLYQGSFQYISMNGKEVYKFAVSQVPLSILTCLHQANLS
IKDVDWLLLHQANERILMAVADKLSISSDKIISNLGQYGNTSAASIPLAL
HEAVQVHRIVANDIVVIAGFGAGLTWGSVVLRW*

spliced messenger RNA

>Gvermi13674.t1 ID=Gvermi13674.t1|Name=Gvermi13674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_59:74128..75129+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAAAGATATGTTTCAAGGAGCAAAAATAATTTCTACAGGTTCTTC
TATTCCATGTGCTAAGGTTAGTAATGAACAAATTAGTTCGATTGTTGAAA
CATCTGATGAGTGGATTTTTACCCGTACAGGTATTAAAGAAAGAAGACTT
TTAACTCAGTATGGACAGTCTATTGTTGAACTTGCTTCAGAAGCTTCCAT
TAAAGCTATAGAACAAATCTCAATGGATCCTAAGAACATAGATTTGCTTA
TTCTAGCTACCTCAAGTCCGAATGATTTATTCGGTAGTGCCAGTAAGATT
CAGTATGCAATAGGTGCTACAAATGCTTTTGCTTTCGATTTAACAGCAGC
TTGTTCTGGTTTTGTAGTTAGTCTTGTTACGGCTTTCCAGTTTATACGTA
ATGGATCATACAAAAATATTTTAATAATTGGTGCTGATGTTTTATCAAAA
TGGGTTGATTGGTCTGATCGTAGTACGTGTATTTTATTTGGAGATGCTGC
TGGTGCTGTAATCCTTCAGTCGTGTGACGTTAGTTTTAATTCTATACTAA
ACTTTCATTTGAAAACAGATGGAAAGTATGCTAACTATCTTTCTATTGCT
TACAAAGAAAATTTTGATCCTCACCCTGTTTTAAAATTATATCAAGGATC
TTTCCAATATATTTCTATGAATGGCAAAGAAGTATATAAATTTGCTGTTT
CACAAGTTCCTTTAAGTATTTTAACATGTCTTCATCAAGCAAACTTATCA
ATTAAAGATGTTGATTGGTTATTGTTACATCAAGCTAATGAACGTATTCT
GATGGCAGTTGCAGATAAGCTTTCTATAAGTTCTGATAAAATTATTTCTA
ATTTGGGTCAGTATGGCAATACTTCTGCTGCTTCTATTCCTCTTGCCTTA
CACGAGGCCGTTCAAGTTCATAGAATTGTTGCGAATGATATTGTTGTTAT
TGCTGGTTTTGGAGCCGGCTTAACTTGGGGTAGTGTTGTATTACGTTGGT
AG

protein sequence of Gvermi13674.t1

>Gvermi13674.t1 ID=Gvermi13674.t1|Name=Gvermi13674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=334bp
MKKDMFQGAKIISTGSSIPCAKVSNEQISSIVETSDEWIFTRTGIKERRL
LTQYGQSIVELASEASIKAIEQISMDPKNIDLLILATSSPNDLFGSASKI
QYAIGATNAFAFDLTAACSGFVVSLVTAFQFIRNGSYKNILIIGADVLSK
WVDWSDRSTCILFGDAAGAVILQSCDVSFNSILNFHLKTDGKYANYLSIA
YKENFDPHPVLKLYQGSFQYISMNGKEVYKFAVSQVPLSILTCLHQANLS
IKDVDWLLLHQANERILMAVADKLSISSDKIISNLGQYGNTSAASIPLAL
HEAVQVHRIVANDIVVIAGFGAGLTWGSVVLRW*

mRNA from alignment at ScGOVlb_59:74128..75129+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13674.t1 ID=Gvermi13674.t1|Name=Gvermi13674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1002bp|location=Sequence derived from alignment at ScGOVlb_59:74128..75129+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAAAGATATGTTTCAAGGAGCAAAAATAATTTCTACAGGTTCTTC
TATTCCATGTGCTAAGGTTAGTAATGAACAAATTAGTTCGATTGTTGAAA
CATCTGATGAGTGGATTTTTACCCGTACAGGTATTAAAGAAAGAAGACTT
TTAACTCAGTATGGACAGTCTATTGTTGAACTTGCTTCAGAAGCTTCCAT
TAAAGCTATAGAACAAATCTCAATGGATCCTAAGAACATAGATTTGCTTA
TTCTAGCTACCTCAAGTCCGAATGATTTATTCGGTAGTGCCAGTAAGATT
CAGTATGCAATAGGTGCTACAAATGCTTTTGCTTTCGATTTAACAGCAGC
TTGTTCTGGTTTTGTAGTTAGTCTTGTTACGGCTTTCCAGTTTATACGTA
ATGGATCATACAAAAATATTTTAATAATTGGTGCTGATGTTTTATCAAAA
TGGGTTGATTGGTCTGATCGTAGTACGTGTATTTTATTTGGAGATGCTGC
TGGTGCTGTAATCCTTCAGTCGTGTGACGTTAGTTTTAATTCTATACTAA
ACTTTCATTTGAAAACAGATGGAAAGTATGCTAACTATCTTTCTATTGCT
TACAAAGAAAATTTTGATCCTCACCCTGTTTTAAAATTATATCAAGGATC
TTTCCAATATATTTCTATGAATGGCAAAGAAGTATATAAATTTGCTGTTT
CACAAGTTCCTTTAAGTATTTTAACATGTCTTCATCAAGCAAACTTATCA
ATTAAAGATGTTGATTGGTTATTGTTACATCAAGCTAATGAACGTATTCT
GATGGCAGTTGCAGATAAGCTTTCTATAAGTTCTGATAAAATTATTTCTA
ATTTGGGTCAGTATGGCAATACTTCTGCTGCTTCTATTCCTCTTGCCTTA
CACGAGGCCGTTCAAGTTCATAGAATTGTTGCGAATGATATTGTTGTTAT
TGCTGGTTTTGGAGCCGGCTTAACTTGGGGTAGTGTTGTATTACGTTGGT
AG

Coding sequence (CDS) from alignment at ScGOVlb_59:74128..75129+

>Gvermi13674.t1 ID=Gvermi13674.t1|Name=Gvermi13674.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1002bp|location=Sequence derived from alignment at ScGOVlb_59:74128..75129+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAAAAGATATGTTTCAAGGAGCAAAAATAATTTCTACAGGTTCTTC
TATTCCATGTGCTAAGGTTAGTAATGAACAAATTAGTTCGATTGTTGAAA
CATCTGATGAGTGGATTTTTACCCGTACAGGTATTAAAGAAAGAAGACTT
TTAACTCAGTATGGACAGTCTATTGTTGAACTTGCTTCAGAAGCTTCCAT
TAAAGCTATAGAACAAATCTCAATGGATCCTAAGAACATAGATTTGCTTA
TTCTAGCTACCTCAAGTCCGAATGATTTATTCGGTAGTGCCAGTAAGATT
CAGTATGCAATAGGTGCTACAAATGCTTTTGCTTTCGATTTAACAGCAGC
TTGTTCTGGTTTTGTAGTTAGTCTTGTTACGGCTTTCCAGTTTATACGTA
ATGGATCATACAAAAATATTTTAATAATTGGTGCTGATGTTTTATCAAAA
TGGGTTGATTGGTCTGATCGTAGTACGTGTATTTTATTTGGAGATGCTGC
TGGTGCTGTAATCCTTCAGTCGTGTGACGTTAGTTTTAATTCTATACTAA
ACTTTCATTTGAAAACAGATGGAAAGTATGCTAACTATCTTTCTATTGCT
TACAAAGAAAATTTTGATCCTCACCCTGTTTTAAAATTATATCAAGGATC
TTTCCAATATATTTCTATGAATGGCAAAGAAGTATATAAATTTGCTGTTT
CACAAGTTCCTTTAAGTATTTTAACATGTCTTCATCAAGCAAACTTATCA
ATTAAAGATGTTGATTGGTTATTGTTACATCAAGCTAATGAACGTATTCT
GATGGCAGTTGCAGATAAGCTTTCTATAAGTTCTGATAAAATTATTTCTA
ATTTGGGTCAGTATGGCAATACTTCTGCTGCTTCTATTCCTCTTGCCTTA
CACGAGGCCGTTCAAGTTCATAGAATTGTTGCGAATGATATTGTTGTTAT
TGCTGGTTTTGGAGCCGGCTTAACTTGGGGTAGTGTTGTATTACGTTGGT
AG