Gvermi13673.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13673.t1
Unique NameGvermi13673.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length820
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:66895..69354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173025.GEI7407_0504
Preferred nameclpC
PFAMsAAA,AAA_2,ClpB_D2-small,Clp_N,UVR
Max annot lvl1117|Cyanobacteria
KEGG koko:K03696
KEGG Pathwayko01100,map01100
Evalue0.0
EggNOG OGsCOG0542@1|root,COG0542@2|Bacteria,1G0ZH@1117|Cyanobacteria,1H8UC@1150|Oscillatoriales
DescriptionBelongs to the ClpA ClpB family
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13673Gvermi13673Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 66895..69354 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13673.t1.start1Gvermi13673.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 66895..66897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13673.t1.CDS1Gvermi13673.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 66895..69354 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13673.t1.exon1Gvermi13673.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 66895..69354 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13673.t1.stop1Gvermi13673.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 69352..69354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13673.t1Gvermi13673.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 66895..69354 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=820bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK
SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH
NYIGTEHLLMGLVREGEGVAARVLENLSVNVASIRTEVIQMLGDNTDVNS
ANANNMQTRSKTPTLEEFGSNLTELAIEGVLDPVVGRQKEIERVIQILGR
RTKNNPVLIGEPGVGKTAIAEGLAQRITNRDIPSILEDKLVITLDVGLLV
AGTKYRGEFEERLKRIMDEIKSATNVILVIDEVHTLIGAGAAEGAIDAAN
LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI
EILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDRFLPDKAIDLIDEA
GSRVRLLNSQLPPAARELDRELRSVLKTKDEAIRAQKYEKAEQYRAREME
IKAQIAAIAQSKNSEPDLKLEDPVVTEDDIAEIVAFWTGIPVTKLTKSES
EKLMHMEDTLHSRIIGQEEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP
TGVGKTELTKALASYFFGAQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY
SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT
IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQVESQYNRIKSLVNEEL
KQYFRPEFLNRLDEIIVFRQLTKEEVREIADIMLDEVFQRIKQQEIILSV
TERFKNKLVDEGYNPSYGARPLRRAVMRLLEDILAEEVLSGKIKAGDSAV
VDVGDDGSVKVLLGDKLIV*
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spliced messenger RNA

>Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2460bp|location=Sequence derived from alignment at ScGOVlb_59:66895..69354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGAACGCTTTACTGAAAAAGCAATTAAAGTTATTATGCTAGCCCA
GGAGGAAGCAAGACGATTAGGTCATAATTTTGTTGGAACTGAGCAAATAT
TATTAGGCTTAATAGGTGAAGGAACTGGAATTGCTGCCCAAGTCCTTAAG
TCTATGAATGTTAATTTGAAAGACGCTAGAATTGAAGTTGAAAAAATTAT
AGGTCGTGGTTCTGGTTTTGTGGCTGTTGAAATACCTTTCACTCCTAGAG
CAAAAAGGGTTTTAGAGTTATCATTAGAAGAAGCAAGACAATTAGGTCAC
AATTATATTGGAACTGAGCATTTGTTGATGGGTTTAGTTAGAGAAGGAGA
AGGAGTAGCAGCAAGGGTATTAGAAAATTTATCTGTCAATGTTGCTTCTA
TTAGAACCGAAGTTATTCAAATGTTGGGCGATAATACCGATGTTAATTCT
GCAAACGCCAATAATATGCAGACAAGAAGTAAAACTCCTACCTTAGAAGA
ATTTGGTTCTAATTTAACAGAATTGGCTATAGAAGGGGTTTTAGATCCTG
TTGTTGGTAGACAAAAAGAAATTGAAAGAGTAATACAAATTTTAGGTCGT
CGTACTAAAAATAATCCTGTATTAATTGGTGAACCTGGAGTTGGAAAAAC
TGCTATAGCGGAAGGACTTGCTCAAAGGATAACAAATCGGGATATTCCAT
CAATATTGGAGGATAAGCTTGTTATCACACTAGATGTTGGATTGCTTGTT
GCAGGTACTAAATATCGTGGTGAGTTTGAAGAAAGATTGAAAAGAATTAT
GGATGAAATTAAATCTGCTACAAATGTAATACTTGTGATAGATGAAGTTC
ATACTTTAATAGGGGCAGGTGCTGCTGAGGGAGCAATTGATGCTGCTAAT
TTATTAAAGCCTGCGCTAGCTAGAGGTGAATTACAGTGTATTGGTGCTAC
TACATTAGAAGAATATCGAAAGCATATTGAGAAAGATGCTGCATTAGAGC
GTCGTTTTCAGCCCGTATTAGTTGGTGAACCTAGTGTTGAAGAAACTATT
GAGATACTTTTCGGATTACGAGATCGTTATGAGAAACATCATCAGTTGAA
AATGTCAGATGAAGCTTTAGCTGCTGCTGCTAAGTATGCAAATCAATATA
TTTCAGATCGTTTTCTTCCTGATAAAGCGATTGATTTAATCGATGAAGCT
GGTTCTAGAGTAAGATTGTTAAATTCTCAATTACCTCCTGCTGCTAGAGA
GTTGGATAGAGAATTACGTTCTGTTCTAAAAACAAAAGATGAAGCTATAA
GAGCGCAAAAATATGAAAAAGCGGAGCAATATAGAGCTCGTGAAATGGAA
ATTAAAGCACAAATAGCAGCTATAGCTCAGAGTAAAAATTCGGAACCAGA
TTTAAAATTAGAAGATCCTGTAGTTACTGAAGATGATATTGCCGAAATTG
TTGCATTTTGGACTGGTATACCTGTTACAAAATTAACAAAAAGTGAGTCC
GAAAAACTTATGCATATGGAAGATACTTTACATAGCAGGATTATTGGTCA
AGAAGAAGCTGTTGTTGCAGTTTCTAGGGCTATTCGTCGCGCACGGGTTG
GTTTAAAAAATCCTAATAGACCAATAGCAAGTTTTATTTTCTCTGGACCT
ACTGGTGTTGGTAAAACAGAATTAACGAAAGCATTAGCTTCATATTTTTT
TGGTGCTCAGGAAGCAATGGTGAGATTAGATATGTCAGAGTACATGGAAA
GACACACCGTTTCTAAATTAATTGGTTCTCCTCCAGGATATGTTGGATAT
AGTGAGGGAGGTTATCTTACGGAAGCTGTTAGAAAAAGACCTTACACCGT
GATTCTCTTTGATGAAATTGAGAAAGCGCACCCTGATATTTTTAACTTAT
TGTTACAGATCTTAGAAGATGGTCGTCTAACAGACGCTAAAGGTCGTACA
ATTGATTTTAAAAATACTTTGTTAATTATGACATCTAATATAGGTTCTAA
GGTAATTGAAAAAGGAGGTGGAAGTTTAGGTTTTGAGCTGGGTGAATCCC
AAGTTGAATCTCAATATAATCGTATCAAATCTCTTGTAAATGAAGAATTA
AAACAATACTTCCGTCCTGAATTCTTAAATAGATTAGATGAAATTATTGT
TTTTAGGCAGTTAACTAAAGAAGAAGTTCGTGAAATTGCTGATATAATGT
TAGATGAGGTTTTCCAAAGAATAAAACAACAAGAAATTATTTTAAGTGTT
ACAGAACGCTTTAAGAATAAATTAGTTGATGAAGGTTATAATCCAAGTTA
TGGAGCGCGACCTCTAAGACGCGCTGTTATGAGATTATTGGAGGATATTT
TAGCAGAAGAAGTACTTTCTGGTAAAATAAAAGCAGGTGATAGTGCTGTT
GTTGATGTTGGTGATGATGGATCTGTTAAAGTTTTATTAGGAGATAAGCT
AATCGTATAA
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protein sequence of Gvermi13673.t1

>Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=820bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK
SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH
NYIGTEHLLMGLVREGEGVAARVLENLSVNVASIRTEVIQMLGDNTDVNS
ANANNMQTRSKTPTLEEFGSNLTELAIEGVLDPVVGRQKEIERVIQILGR
RTKNNPVLIGEPGVGKTAIAEGLAQRITNRDIPSILEDKLVITLDVGLLV
AGTKYRGEFEERLKRIMDEIKSATNVILVIDEVHTLIGAGAAEGAIDAAN
LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI
EILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDRFLPDKAIDLIDEA
GSRVRLLNSQLPPAARELDRELRSVLKTKDEAIRAQKYEKAEQYRAREME
IKAQIAAIAQSKNSEPDLKLEDPVVTEDDIAEIVAFWTGIPVTKLTKSES
EKLMHMEDTLHSRIIGQEEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP
TGVGKTELTKALASYFFGAQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY
SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT
IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQVESQYNRIKSLVNEEL
KQYFRPEFLNRLDEIIVFRQLTKEEVREIADIMLDEVFQRIKQQEIILSV
TERFKNKLVDEGYNPSYGARPLRRAVMRLLEDILAEEVLSGKIKAGDSAV
VDVGDDGSVKVLLGDKLIV*
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mRNA from alignment at ScGOVlb_59:66895..69354+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2460bp|location=Sequence derived from alignment at ScGOVlb_59:66895..69354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGAACGCTTTACTGAAAAAGCAATTAAAGTTATTATGCTAGCCCA GGAGGAAGCAAGACGATTAGGTCATAATTTTGTTGGAACTGAGCAAATAT TATTAGGCTTAATAGGTGAAGGAACTGGAATTGCTGCCCAAGTCCTTAAG TCTATGAATGTTAATTTGAAAGACGCTAGAATTGAAGTTGAAAAAATTAT AGGTCGTGGTTCTGGTTTTGTGGCTGTTGAAATACCTTTCACTCCTAGAG CAAAAAGGGTTTTAGAGTTATCATTAGAAGAAGCAAGACAATTAGGTCAC AATTATATTGGAACTGAGCATTTGTTGATGGGTTTAGTTAGAGAAGGAGA AGGAGTAGCAGCAAGGGTATTAGAAAATTTATCTGTCAATGTTGCTTCTA TTAGAACCGAAGTTATTCAAATGTTGGGCGATAATACCGATGTTAATTCT GCAAACGCCAATAATATGCAGACAAGAAGTAAAACTCCTACCTTAGAAGA ATTTGGTTCTAATTTAACAGAATTGGCTATAGAAGGGGTTTTAGATCCTG TTGTTGGTAGACAAAAAGAAATTGAAAGAGTAATACAAATTTTAGGTCGT CGTACTAAAAATAATCCTGTATTAATTGGTGAACCTGGAGTTGGAAAAAC TGCTATAGCGGAAGGACTTGCTCAAAGGATAACAAATCGGGATATTCCAT CAATATTGGAGGATAAGCTTGTTATCACACTAGATGTTGGATTGCTTGTT GCAGGTACTAAATATCGTGGTGAGTTTGAAGAAAGATTGAAAAGAATTAT GGATGAAATTAAATCTGCTACAAATGTAATACTTGTGATAGATGAAGTTC ATACTTTAATAGGGGCAGGTGCTGCTGAGGGAGCAATTGATGCTGCTAAT TTATTAAAGCCTGCGCTAGCTAGAGGTGAATTACAGTGTATTGGTGCTAC TACATTAGAAGAATATCGAAAGCATATTGAGAAAGATGCTGCATTAGAGC GTCGTTTTCAGCCCGTATTAGTTGGTGAACCTAGTGTTGAAGAAACTATT GAGATACTTTTCGGATTACGAGATCGTTATGAGAAACATCATCAGTTGAA AATGTCAGATGAAGCTTTAGCTGCTGCTGCTAAGTATGCAAATCAATATA TTTCAGATCGTTTTCTTCCTGATAAAGCGATTGATTTAATCGATGAAGCT GGTTCTAGAGTAAGATTGTTAAATTCTCAATTACCTCCTGCTGCTAGAGA GTTGGATAGAGAATTACGTTCTGTTCTAAAAACAAAAGATGAAGCTATAA GAGCGCAAAAATATGAAAAAGCGGAGCAATATAGAGCTCGTGAAATGGAA ATTAAAGCACAAATAGCAGCTATAGCTCAGAGTAAAAATTCGGAACCAGA TTTAAAATTAGAAGATCCTGTAGTTACTGAAGATGATATTGCCGAAATTG TTGCATTTTGGACTGGTATACCTGTTACAAAATTAACAAAAAGTGAGTCC GAAAAACTTATGCATATGGAAGATACTTTACATAGCAGGATTATTGGTCA AGAAGAAGCTGTTGTTGCAGTTTCTAGGGCTATTCGTCGCGCACGGGTTG GTTTAAAAAATCCTAATAGACCAATAGCAAGTTTTATTTTCTCTGGACCT ACTGGTGTTGGTAAAACAGAATTAACGAAAGCATTAGCTTCATATTTTTT TGGTGCTCAGGAAGCAATGGTGAGATTAGATATGTCAGAGTACATGGAAA GACACACCGTTTCTAAATTAATTGGTTCTCCTCCAGGATATGTTGGATAT AGTGAGGGAGGTTATCTTACGGAAGCTGTTAGAAAAAGACCTTACACCGT GATTCTCTTTGATGAAATTGAGAAAGCGCACCCTGATATTTTTAACTTAT TGTTACAGATCTTAGAAGATGGTCGTCTAACAGACGCTAAAGGTCGTACA ATTGATTTTAAAAATACTTTGTTAATTATGACATCTAATATAGGTTCTAA GGTAATTGAAAAAGGAGGTGGAAGTTTAGGTTTTGAGCTGGGTGAATCCC AAGTTGAATCTCAATATAATCGTATCAAATCTCTTGTAAATGAAGAATTA AAACAATACTTCCGTCCTGAATTCTTAAATAGATTAGATGAAATTATTGT TTTTAGGCAGTTAACTAAAGAAGAAGTTCGTGAAATTGCTGATATAATGT TAGATGAGGTTTTCCAAAGAATAAAACAACAAGAAATTATTTTAAGTGTT ACAGAACGCTTTAAGAATAAATTAGTTGATGAAGGTTATAATCCAAGTTA TGGAGCGCGACCTCTAAGACGCGCTGTTATGAGATTATTGGAGGATATTT TAGCAGAAGAAGTACTTTCTGGTAAAATAAAAGCAGGTGATAGTGCTGTT GTTGATGTTGGTGATGATGGATCTGTTAAAGTTTTATTAGGAGATAAGCT AATCGTATAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:66895..69354+

>Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2460bp|location=Sequence derived from alignment at ScGOVlb_59:66895..69354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTGAACGCTTTACTGAAAAAGCAATTAAAGTTATTATGCTAGCCCA
GGAGGAAGCAAGACGATTAGGTCATAATTTTGTTGGAACTGAGCAAATAT
TATTAGGCTTAATAGGTGAAGGAACTGGAATTGCTGCCCAAGTCCTTAAG
TCTATGAATGTTAATTTGAAAGACGCTAGAATTGAAGTTGAAAAAATTAT
AGGTCGTGGTTCTGGTTTTGTGGCTGTTGAAATACCTTTCACTCCTAGAG
CAAAAAGGGTTTTAGAGTTATCATTAGAAGAAGCAAGACAATTAGGTCAC
AATTATATTGGAACTGAGCATTTGTTGATGGGTTTAGTTAGAGAAGGAGA
AGGAGTAGCAGCAAGGGTATTAGAAAATTTATCTGTCAATGTTGCTTCTA
TTAGAACCGAAGTTATTCAAATGTTGGGCGATAATACCGATGTTAATTCT
GCAAACGCCAATAATATGCAGACAAGAAGTAAAACTCCTACCTTAGAAGA
ATTTGGTTCTAATTTAACAGAATTGGCTATAGAAGGGGTTTTAGATCCTG
TTGTTGGTAGACAAAAAGAAATTGAAAGAGTAATACAAATTTTAGGTCGT
CGTACTAAAAATAATCCTGTATTAATTGGTGAACCTGGAGTTGGAAAAAC
TGCTATAGCGGAAGGACTTGCTCAAAGGATAACAAATCGGGATATTCCAT
CAATATTGGAGGATAAGCTTGTTATCACACTAGATGTTGGATTGCTTGTT
GCAGGTACTAAATATCGTGGTGAGTTTGAAGAAAGATTGAAAAGAATTAT
GGATGAAATTAAATCTGCTACAAATGTAATACTTGTGATAGATGAAGTTC
ATACTTTAATAGGGGCAGGTGCTGCTGAGGGAGCAATTGATGCTGCTAAT
TTATTAAAGCCTGCGCTAGCTAGAGGTGAATTACAGTGTATTGGTGCTAC
TACATTAGAAGAATATCGAAAGCATATTGAGAAAGATGCTGCATTAGAGC
GTCGTTTTCAGCCCGTATTAGTTGGTGAACCTAGTGTTGAAGAAACTATT
GAGATACTTTTCGGATTACGAGATCGTTATGAGAAACATCATCAGTTGAA
AATGTCAGATGAAGCTTTAGCTGCTGCTGCTAAGTATGCAAATCAATATA
TTTCAGATCGTTTTCTTCCTGATAAAGCGATTGATTTAATCGATGAAGCT
GGTTCTAGAGTAAGATTGTTAAATTCTCAATTACCTCCTGCTGCTAGAGA
GTTGGATAGAGAATTACGTTCTGTTCTAAAAACAAAAGATGAAGCTATAA
GAGCGCAAAAATATGAAAAAGCGGAGCAATATAGAGCTCGTGAAATGGAA
ATTAAAGCACAAATAGCAGCTATAGCTCAGAGTAAAAATTCGGAACCAGA
TTTAAAATTAGAAGATCCTGTAGTTACTGAAGATGATATTGCCGAAATTG
TTGCATTTTGGACTGGTATACCTGTTACAAAATTAACAAAAAGTGAGTCC
GAAAAACTTATGCATATGGAAGATACTTTACATAGCAGGATTATTGGTCA
AGAAGAAGCTGTTGTTGCAGTTTCTAGGGCTATTCGTCGCGCACGGGTTG
GTTTAAAAAATCCTAATAGACCAATAGCAAGTTTTATTTTCTCTGGACCT
ACTGGTGTTGGTAAAACAGAATTAACGAAAGCATTAGCTTCATATTTTTT
TGGTGCTCAGGAAGCAATGGTGAGATTAGATATGTCAGAGTACATGGAAA
GACACACCGTTTCTAAATTAATTGGTTCTCCTCCAGGATATGTTGGATAT
AGTGAGGGAGGTTATCTTACGGAAGCTGTTAGAAAAAGACCTTACACCGT
GATTCTCTTTGATGAAATTGAGAAAGCGCACCCTGATATTTTTAACTTAT
TGTTACAGATCTTAGAAGATGGTCGTCTAACAGACGCTAAAGGTCGTACA
ATTGATTTTAAAAATACTTTGTTAATTATGACATCTAATATAGGTTCTAA
GGTAATTGAAAAAGGAGGTGGAAGTTTAGGTTTTGAGCTGGGTGAATCCC
AAGTTGAATCTCAATATAATCGTATCAAATCTCTTGTAAATGAAGAATTA
AAACAATACTTCCGTCCTGAATTCTTAAATAGATTAGATGAAATTATTGT
TTTTAGGCAGTTAACTAAAGAAGAAGTTCGTGAAATTGCTGATATAATGT
TAGATGAGGTTTTCCAAAGAATAAAACAACAAGAAATTATTTTAAGTGTT
ACAGAACGCTTTAAGAATAAATTAGTTGATGAAGGTTATAATCCAAGTTA
TGGAGCGCGACCTCTAAGACGCGCTGTTATGAGATTATTGGAGGATATTT
TAGCAGAAGAAGTACTTTCTGGTAAAATAAAAGCAGGTGATAGTGCTGTT
GTTGATGTTGGTGATGATGGATCTGTTAAAGTTTTATTAGGAGATAAGCT
AATCGTATAA
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