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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 1173025.GEI7407_0504 |
| Preferred name | clpC |
| PFAMs | AAA,AAA_2,ClpB_D2-small,Clp_N,UVR |
| Max annot lvl | 1117|Cyanobacteria |
| KEGG ko | ko:K03696 |
| KEGG Pathway | ko01100,map01100 |
| Evalue | 0.0 |
| EggNOG OGs | COG0542@1|root,COG0542@2|Bacteria,1G0ZH@1117|Cyanobacteria,1H8UC@1150|Oscillatoriales |
| Description | Belongs to the ClpA ClpB family |
| COG category | O |
| BRITE | ko00000,ko03110 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=820bp MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH NYIGTEHLLMGLVREGEGVAARVLENLSVNVASIRTEVIQMLGDNTDVNS ANANNMQTRSKTPTLEEFGSNLTELAIEGVLDPVVGRQKEIERVIQILGR RTKNNPVLIGEPGVGKTAIAEGLAQRITNRDIPSILEDKLVITLDVGLLV AGTKYRGEFEERLKRIMDEIKSATNVILVIDEVHTLIGAGAAEGAIDAAN LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI EILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDRFLPDKAIDLIDEA GSRVRLLNSQLPPAARELDRELRSVLKTKDEAIRAQKYEKAEQYRAREME IKAQIAAIAQSKNSEPDLKLEDPVVTEDDIAEIVAFWTGIPVTKLTKSES EKLMHMEDTLHSRIIGQEEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP TGVGKTELTKALASYFFGAQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQVESQYNRIKSLVNEEL KQYFRPEFLNRLDEIIVFRQLTKEEVREIADIMLDEVFQRIKQQEIILSV TERFKNKLVDEGYNPSYGARPLRRAVMRLLEDILAEEVLSGKIKAGDSAV VDVGDDGSVKVLLGDKLIV* back to topspliced messenger RNA >Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2460bp|location=Sequence derived from alignment at ScGOVlb_59:66895..69354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTTGAACGCTTTACTGAAAAAGCAATTAAAGTTATTATGCTAGCCCA GGAGGAAGCAAGACGATTAGGTCATAATTTTGTTGGAACTGAGCAAATAT TATTAGGCTTAATAGGTGAAGGAACTGGAATTGCTGCCCAAGTCCTTAAG TCTATGAATGTTAATTTGAAAGACGCTAGAATTGAAGTTGAAAAAATTAT AGGTCGTGGTTCTGGTTTTGTGGCTGTTGAAATACCTTTCACTCCTAGAG CAAAAAGGGTTTTAGAGTTATCATTAGAAGAAGCAAGACAATTAGGTCAC AATTATATTGGAACTGAGCATTTGTTGATGGGTTTAGTTAGAGAAGGAGA AGGAGTAGCAGCAAGGGTATTAGAAAATTTATCTGTCAATGTTGCTTCTA TTAGAACCGAAGTTATTCAAATGTTGGGCGATAATACCGATGTTAATTCT GCAAACGCCAATAATATGCAGACAAGAAGTAAAACTCCTACCTTAGAAGA ATTTGGTTCTAATTTAACAGAATTGGCTATAGAAGGGGTTTTAGATCCTG TTGTTGGTAGACAAAAAGAAATTGAAAGAGTAATACAAATTTTAGGTCGT CGTACTAAAAATAATCCTGTATTAATTGGTGAACCTGGAGTTGGAAAAAC TGCTATAGCGGAAGGACTTGCTCAAAGGATAACAAATCGGGATATTCCAT CAATATTGGAGGATAAGCTTGTTATCACACTAGATGTTGGATTGCTTGTT GCAGGTACTAAATATCGTGGTGAGTTTGAAGAAAGATTGAAAAGAATTAT GGATGAAATTAAATCTGCTACAAATGTAATACTTGTGATAGATGAAGTTC ATACTTTAATAGGGGCAGGTGCTGCTGAGGGAGCAATTGATGCTGCTAAT TTATTAAAGCCTGCGCTAGCTAGAGGTGAATTACAGTGTATTGGTGCTAC TACATTAGAAGAATATCGAAAGCATATTGAGAAAGATGCTGCATTAGAGC GTCGTTTTCAGCCCGTATTAGTTGGTGAACCTAGTGTTGAAGAAACTATT GAGATACTTTTCGGATTACGAGATCGTTATGAGAAACATCATCAGTTGAA AATGTCAGATGAAGCTTTAGCTGCTGCTGCTAAGTATGCAAATCAATATA TTTCAGATCGTTTTCTTCCTGATAAAGCGATTGATTTAATCGATGAAGCT GGTTCTAGAGTAAGATTGTTAAATTCTCAATTACCTCCTGCTGCTAGAGA GTTGGATAGAGAATTACGTTCTGTTCTAAAAACAAAAGATGAAGCTATAA GAGCGCAAAAATATGAAAAAGCGGAGCAATATAGAGCTCGTGAAATGGAA ATTAAAGCACAAATAGCAGCTATAGCTCAGAGTAAAAATTCGGAACCAGA TTTAAAATTAGAAGATCCTGTAGTTACTGAAGATGATATTGCCGAAATTG TTGCATTTTGGACTGGTATACCTGTTACAAAATTAACAAAAAGTGAGTCC GAAAAACTTATGCATATGGAAGATACTTTACATAGCAGGATTATTGGTCA AGAAGAAGCTGTTGTTGCAGTTTCTAGGGCTATTCGTCGCGCACGGGTTG GTTTAAAAAATCCTAATAGACCAATAGCAAGTTTTATTTTCTCTGGACCT ACTGGTGTTGGTAAAACAGAATTAACGAAAGCATTAGCTTCATATTTTTT TGGTGCTCAGGAAGCAATGGTGAGATTAGATATGTCAGAGTACATGGAAA GACACACCGTTTCTAAATTAATTGGTTCTCCTCCAGGATATGTTGGATAT AGTGAGGGAGGTTATCTTACGGAAGCTGTTAGAAAAAGACCTTACACCGT GATTCTCTTTGATGAAATTGAGAAAGCGCACCCTGATATTTTTAACTTAT TGTTACAGATCTTAGAAGATGGTCGTCTAACAGACGCTAAAGGTCGTACA ATTGATTTTAAAAATACTTTGTTAATTATGACATCTAATATAGGTTCTAA GGTAATTGAAAAAGGAGGTGGAAGTTTAGGTTTTGAGCTGGGTGAATCCC AAGTTGAATCTCAATATAATCGTATCAAATCTCTTGTAAATGAAGAATTA AAACAATACTTCCGTCCTGAATTCTTAAATAGATTAGATGAAATTATTGT TTTTAGGCAGTTAACTAAAGAAGAAGTTCGTGAAATTGCTGATATAATGT TAGATGAGGTTTTCCAAAGAATAAAACAACAAGAAATTATTTTAAGTGTT ACAGAACGCTTTAAGAATAAATTAGTTGATGAAGGTTATAATCCAAGTTA TGGAGCGCGACCTCTAAGACGCGCTGTTATGAGATTATTGGAGGATATTT TAGCAGAAGAAGTACTTTCTGGTAAAATAAAAGCAGGTGATAGTGCTGTT GTTGATGTTGGTGATGATGGATCTGTTAAAGTTTTATTAGGAGATAAGCT AATCGTATAA back to topprotein sequence of Gvermi13673.t1 >Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=820bp
MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAQVLK SMNVNLKDARIEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGH NYIGTEHLLMGLVREGEGVAARVLENLSVNVASIRTEVIQMLGDNTDVNS ANANNMQTRSKTPTLEEFGSNLTELAIEGVLDPVVGRQKEIERVIQILGR RTKNNPVLIGEPGVGKTAIAEGLAQRITNRDIPSILEDKLVITLDVGLLV AGTKYRGEFEERLKRIMDEIKSATNVILVIDEVHTLIGAGAAEGAIDAAN LLKPALARGELQCIGATTLEEYRKHIEKDAALERRFQPVLVGEPSVEETI EILFGLRDRYEKHHQLKMSDEALAAAAKYANQYISDRFLPDKAIDLIDEA GSRVRLLNSQLPPAARELDRELRSVLKTKDEAIRAQKYEKAEQYRAREME IKAQIAAIAQSKNSEPDLKLEDPVVTEDDIAEIVAFWTGIPVTKLTKSES EKLMHMEDTLHSRIIGQEEAVVAVSRAIRRARVGLKNPNRPIASFIFSGP TGVGKTELTKALASYFFGAQEAMVRLDMSEYMERHTVSKLIGSPPGYVGY SEGGYLTEAVRKRPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRT IDFKNTLLIMTSNIGSKVIEKGGGSLGFELGESQVESQYNRIKSLVNEEL KQYFRPEFLNRLDEIIVFRQLTKEEVREIADIMLDEVFQRIKQQEIILSV TERFKNKLVDEGYNPSYGARPLRRAVMRLLEDILAEEVLSGKIKAGDSAV VDVGDDGSVKVLLGDKLIV* back to topmRNA from alignment at ScGOVlb_59:66895..69354+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2460bp|location=Sequence derived from alignment at ScGOVlb_59:66895..69354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTTGAACGCTTTACTGAAAAAGCAATTAAAGTTATTATGCTAGCCCA
GGAGGAAGCAAGACGATTAGGTCATAATTTTGTTGGAACTGAGCAAATAT
TATTAGGCTTAATAGGTGAAGGAACTGGAATTGCTGCCCAAGTCCTTAAG
TCTATGAATGTTAATTTGAAAGACGCTAGAATTGAAGTTGAAAAAATTAT
AGGTCGTGGTTCTGGTTTTGTGGCTGTTGAAATACCTTTCACTCCTAGAG
CAAAAAGGGTTTTAGAGTTATCATTAGAAGAAGCAAGACAATTAGGTCAC
AATTATATTGGAACTGAGCATTTGTTGATGGGTTTAGTTAGAGAAGGAGA
AGGAGTAGCAGCAAGGGTATTAGAAAATTTATCTGTCAATGTTGCTTCTA
TTAGAACCGAAGTTATTCAAATGTTGGGCGATAATACCGATGTTAATTCT
GCAAACGCCAATAATATGCAGACAAGAAGTAAAACTCCTACCTTAGAAGA
ATTTGGTTCTAATTTAACAGAATTGGCTATAGAAGGGGTTTTAGATCCTG
TTGTTGGTAGACAAAAAGAAATTGAAAGAGTAATACAAATTTTAGGTCGT
CGTACTAAAAATAATCCTGTATTAATTGGTGAACCTGGAGTTGGAAAAAC
TGCTATAGCGGAAGGACTTGCTCAAAGGATAACAAATCGGGATATTCCAT
CAATATTGGAGGATAAGCTTGTTATCACACTAGATGTTGGATTGCTTGTT
GCAGGTACTAAATATCGTGGTGAGTTTGAAGAAAGATTGAAAAGAATTAT
GGATGAAATTAAATCTGCTACAAATGTAATACTTGTGATAGATGAAGTTC
ATACTTTAATAGGGGCAGGTGCTGCTGAGGGAGCAATTGATGCTGCTAAT
TTATTAAAGCCTGCGCTAGCTAGAGGTGAATTACAGTGTATTGGTGCTAC
TACATTAGAAGAATATCGAAAGCATATTGAGAAAGATGCTGCATTAGAGC
GTCGTTTTCAGCCCGTATTAGTTGGTGAACCTAGTGTTGAAGAAACTATT
GAGATACTTTTCGGATTACGAGATCGTTATGAGAAACATCATCAGTTGAA
AATGTCAGATGAAGCTTTAGCTGCTGCTGCTAAGTATGCAAATCAATATA
TTTCAGATCGTTTTCTTCCTGATAAAGCGATTGATTTAATCGATGAAGCT
GGTTCTAGAGTAAGATTGTTAAATTCTCAATTACCTCCTGCTGCTAGAGA
GTTGGATAGAGAATTACGTTCTGTTCTAAAAACAAAAGATGAAGCTATAA
GAGCGCAAAAATATGAAAAAGCGGAGCAATATAGAGCTCGTGAAATGGAA
ATTAAAGCACAAATAGCAGCTATAGCTCAGAGTAAAAATTCGGAACCAGA
TTTAAAATTAGAAGATCCTGTAGTTACTGAAGATGATATTGCCGAAATTG
TTGCATTTTGGACTGGTATACCTGTTACAAAATTAACAAAAAGTGAGTCC
GAAAAACTTATGCATATGGAAGATACTTTACATAGCAGGATTATTGGTCA
AGAAGAAGCTGTTGTTGCAGTTTCTAGGGCTATTCGTCGCGCACGGGTTG
GTTTAAAAAATCCTAATAGACCAATAGCAAGTTTTATTTTCTCTGGACCT
ACTGGTGTTGGTAAAACAGAATTAACGAAAGCATTAGCTTCATATTTTTT
TGGTGCTCAGGAAGCAATGGTGAGATTAGATATGTCAGAGTACATGGAAA
GACACACCGTTTCTAAATTAATTGGTTCTCCTCCAGGATATGTTGGATAT
AGTGAGGGAGGTTATCTTACGGAAGCTGTTAGAAAAAGACCTTACACCGT
GATTCTCTTTGATGAAATTGAGAAAGCGCACCCTGATATTTTTAACTTAT
TGTTACAGATCTTAGAAGATGGTCGTCTAACAGACGCTAAAGGTCGTACA
ATTGATTTTAAAAATACTTTGTTAATTATGACATCTAATATAGGTTCTAA
GGTAATTGAAAAAGGAGGTGGAAGTTTAGGTTTTGAGCTGGGTGAATCCC
AAGTTGAATCTCAATATAATCGTATCAAATCTCTTGTAAATGAAGAATTA
AAACAATACTTCCGTCCTGAATTCTTAAATAGATTAGATGAAATTATTGT
TTTTAGGCAGTTAACTAAAGAAGAAGTTCGTGAAATTGCTGATATAATGT
TAGATGAGGTTTTCCAAAGAATAAAACAACAAGAAATTATTTTAAGTGTT
ACAGAACGCTTTAAGAATAAATTAGTTGATGAAGGTTATAATCCAAGTTA
TGGAGCGCGACCTCTAAGACGCGCTGTTATGAGATTATTGGAGGATATTT
TAGCAGAAGAAGTACTTTCTGGTAAAATAAAAGCAGGTGATAGTGCTGTT
GTTGATGTTGGTGATGATGGATCTGTTAAAGTTTTATTAGGAGATAAGCT
AATCGTATAA back to topCoding sequence (CDS) from alignment at ScGOVlb_59:66895..69354+ >Gvermi13673.t1 ID=Gvermi13673.t1|Name=Gvermi13673.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2460bp|location=Sequence derived from alignment at ScGOVlb_59:66895..69354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTTGAACGCTTTACTGAAAAAGCAATTAAAGTTATTATGCTAGCCCA GGAGGAAGCAAGACGATTAGGTCATAATTTTGTTGGAACTGAGCAAATAT TATTAGGCTTAATAGGTGAAGGAACTGGAATTGCTGCCCAAGTCCTTAAG TCTATGAATGTTAATTTGAAAGACGCTAGAATTGAAGTTGAAAAAATTAT AGGTCGTGGTTCTGGTTTTGTGGCTGTTGAAATACCTTTCACTCCTAGAG CAAAAAGGGTTTTAGAGTTATCATTAGAAGAAGCAAGACAATTAGGTCAC AATTATATTGGAACTGAGCATTTGTTGATGGGTTTAGTTAGAGAAGGAGA AGGAGTAGCAGCAAGGGTATTAGAAAATTTATCTGTCAATGTTGCTTCTA TTAGAACCGAAGTTATTCAAATGTTGGGCGATAATACCGATGTTAATTCT GCAAACGCCAATAATATGCAGACAAGAAGTAAAACTCCTACCTTAGAAGA ATTTGGTTCTAATTTAACAGAATTGGCTATAGAAGGGGTTTTAGATCCTG TTGTTGGTAGACAAAAAGAAATTGAAAGAGTAATACAAATTTTAGGTCGT CGTACTAAAAATAATCCTGTATTAATTGGTGAACCTGGAGTTGGAAAAAC TGCTATAGCGGAAGGACTTGCTCAAAGGATAACAAATCGGGATATTCCAT CAATATTGGAGGATAAGCTTGTTATCACACTAGATGTTGGATTGCTTGTT GCAGGTACTAAATATCGTGGTGAGTTTGAAGAAAGATTGAAAAGAATTAT GGATGAAATTAAATCTGCTACAAATGTAATACTTGTGATAGATGAAGTTC ATACTTTAATAGGGGCAGGTGCTGCTGAGGGAGCAATTGATGCTGCTAAT TTATTAAAGCCTGCGCTAGCTAGAGGTGAATTACAGTGTATTGGTGCTAC TACATTAGAAGAATATCGAAAGCATATTGAGAAAGATGCTGCATTAGAGC GTCGTTTTCAGCCCGTATTAGTTGGTGAACCTAGTGTTGAAGAAACTATT GAGATACTTTTCGGATTACGAGATCGTTATGAGAAACATCATCAGTTGAA AATGTCAGATGAAGCTTTAGCTGCTGCTGCTAAGTATGCAAATCAATATA TTTCAGATCGTTTTCTTCCTGATAAAGCGATTGATTTAATCGATGAAGCT GGTTCTAGAGTAAGATTGTTAAATTCTCAATTACCTCCTGCTGCTAGAGA GTTGGATAGAGAATTACGTTCTGTTCTAAAAACAAAAGATGAAGCTATAA GAGCGCAAAAATATGAAAAAGCGGAGCAATATAGAGCTCGTGAAATGGAA ATTAAAGCACAAATAGCAGCTATAGCTCAGAGTAAAAATTCGGAACCAGA TTTAAAATTAGAAGATCCTGTAGTTACTGAAGATGATATTGCCGAAATTG TTGCATTTTGGACTGGTATACCTGTTACAAAATTAACAAAAAGTGAGTCC GAAAAACTTATGCATATGGAAGATACTTTACATAGCAGGATTATTGGTCA AGAAGAAGCTGTTGTTGCAGTTTCTAGGGCTATTCGTCGCGCACGGGTTG GTTTAAAAAATCCTAATAGACCAATAGCAAGTTTTATTTTCTCTGGACCT ACTGGTGTTGGTAAAACAGAATTAACGAAAGCATTAGCTTCATATTTTTT TGGTGCTCAGGAAGCAATGGTGAGATTAGATATGTCAGAGTACATGGAAA GACACACCGTTTCTAAATTAATTGGTTCTCCTCCAGGATATGTTGGATAT AGTGAGGGAGGTTATCTTACGGAAGCTGTTAGAAAAAGACCTTACACCGT GATTCTCTTTGATGAAATTGAGAAAGCGCACCCTGATATTTTTAACTTAT TGTTACAGATCTTAGAAGATGGTCGTCTAACAGACGCTAAAGGTCGTACA ATTGATTTTAAAAATACTTTGTTAATTATGACATCTAATATAGGTTCTAA GGTAATTGAAAAAGGAGGTGGAAGTTTAGGTTTTGAGCTGGGTGAATCCC AAGTTGAATCTCAATATAATCGTATCAAATCTCTTGTAAATGAAGAATTA AAACAATACTTCCGTCCTGAATTCTTAAATAGATTAGATGAAATTATTGT TTTTAGGCAGTTAACTAAAGAAGAAGTTCGTGAAATTGCTGATATAATGT TAGATGAGGTTTTCCAAAGAATAAAACAACAAGAAATTATTTTAAGTGTT ACAGAACGCTTTAAGAATAAATTAGTTGATGAAGGTTATAATCCAAGTTA TGGAGCGCGACCTCTAAGACGCGCTGTTATGAGATTATTGGAGGATATTT TAGCAGAAGAAGTACTTTCTGGTAAAATAAAAGCAGGTGATAGTGCTGTT GTTGATGTTGGTGATGATGGATCTGTTAAAGTTTTATTAGGAGATAAGCT AATCGTATAA back to top
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