Gvermi13672.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13672.t1
Unique Name	Gvermi13672.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	582

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:64387..66132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.AAC35740
Preferred name	ILV2
PFAMs	TPP_enzyme_C,TPP_enzyme_M,TPP_enzyme_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00027,RC00106,RC01192,RC02744,RC02893
KEGG ko	ko:K01652
KEGG Reaction	R00006,R00014,R00226,R03050,R04672,R04673,R08648
KEGG Pathway	ko00290,ko00650,ko00660,ko00770,ko01100,ko01110,ko01130,ko01210,ko01230,map00290,map00650,map00660,map00770,map01100,map01110,map01130,map01210,map01230
KEGG Module	M00019,M00570
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0003984,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005948,GO:0006082,GO:0006520,GO:0006549,GO:0006573,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009081,GO:0009082,GO:0009097,GO:0009099,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016744,GO:0019752,GO:0032991,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0097159,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902494,GO:1990234
Evalue	2.03e-275
EggNOG OGs	COG0028@1\|root,KOG4166@2759\|Eukaryota
EC	2.2.1.6
Description	acetolactate synthase activity
COG category	EH
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13672	Gvermi13672	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 64387..66132 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13672.t1.start1	Gvermi13672.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 64387..64389 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13672.t1.CDS1	Gvermi13672.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 64387..66132 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13672.t1.exon1	Gvermi13672.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 64387..66132 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13672.t1.stop1	Gvermi13672.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 66130..66132 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13672.t1	Gvermi13672.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 64387..66132 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:64387..66132+
coding sequence from alignment at ScGOVlb_59:64387..66132+

mRNA sequence

>Gvermi13672.t1 ID=Gvermi13672.t1|Name=Gvermi13672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=582bp
MCSNSFVSGSYALIDTLVRNGTYHIFGYPGGAILPIYDELFRWEEKHLVQ
HILCRHEQGAVHAADGYARSSGKVGVCFATSGPGATNLVTGIATAQMDSI
PLILITGQVARAFIGTDAFQEVDIFGITLPIVKHSYVVRDPTDMSRIISE
AFYIAQNGRPGPVLVDIPKDVGLEKFAYKFVPKSSIKLSGCKPTIAVKEK
HFDKFLSLIKQSSQPLLYVGGGAISSNASFCIQRLAEKFRIPITTTLMGK
GVIQENHLLSLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEF
ACNAQVVHIDVDSAELGKNRIPQVAIVGDLKTVIKNFLTYVNQFEENEFN
HELTVSWLQRISSWKKQYPLLVPRNVSFLSAQEILYYISRTQPEAYYTTD
VGQHQMWSAQFLNVLPRHWMSSSGLGTMGYGLPAAIGVQFAQIDKLVICV
SGDASFQMNLQELGTISQYNLPIKILVINNKWQGMVRQWQQAFYGERYSH
SNMEKGSPNLVKLAQSFNILGLQLDSRDNMENMIDLFCNYDGPAILNCNV
RETENCYPMVAPGKSNSQMIGLEKNYISNKK*

spliced messenger RNA

>Gvermi13672.t1 ID=Gvermi13672.t1|Name=Gvermi13672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at ScGOVlb_59:64387..66132+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTCTAATTCTTTTGTGAGTGGTTCTTATGCTCTAATTGATACATT
GGTTCGTAATGGTACCTATCACATCTTTGGTTATCCTGGTGGTGCTATTT
TACCTATATATGATGAATTATTCCGTTGGGAAGAAAAGCATTTAGTACAG
CATATATTATGTAGACATGAACAAGGTGCTGTACATGCAGCAGATGGTTA
TGCTCGATCATCTGGTAAAGTAGGTGTATGTTTTGCAACATCTGGACCTG
GCGCTACTAATTTAGTAACCGGCATTGCTACTGCACAAATGGATTCTATT
CCACTAATTTTAATTACTGGTCAAGTAGCACGTGCTTTTATTGGTACAGA
TGCATTTCAAGAAGTTGATATTTTTGGCATCACCTTACCCATTGTTAAAC
ATTCTTATGTTGTCAGAGATCCTACAGACATGAGTCGTATTATTTCAGAA
GCTTTCTATATTGCTCAAAATGGTAGACCAGGACCTGTTTTAGTAGATAT
TCCTAAAGATGTCGGTCTCGAAAAATTTGCCTACAAATTTGTCCCTAAAT
CTAGTATCAAATTATCTGGCTGTAAACCTACAATAGCAGTGAAAGAAAAA
CATTTTGATAAATTTTTAAGTTTGATTAAGCAATCAAGTCAGCCTTTATT
ATATGTCGGTGGCGGTGCTATTAGTTCAAATGCTTCTTTTTGTATACAGA
GACTGGCTGAAAAATTTAGAATACCTATTACAACCACGTTAATGGGTAAA
GGTGTTATACAAGAAAATCATTTATTATCCCTAGGTATGCTCGGTATGCA
TGGTACTGCTTACGCGAATTTTGCAGTTAGTGAATGTGATTTGTTAATTG
CTTTAGGAGCACGTTTTGATGATAGGGTAACAGGAAAACTAGATGAATTT
GCTTGTAATGCACAAGTAGTGCATATTGATGTTGATTCTGCTGAGTTGGG
TAAGAATCGCATACCTCAAGTTGCAATTGTTGGGGATTTAAAAACTGTTA
TAAAGAATTTTTTGACTTATGTTAACCAATTTGAAGAAAATGAATTTAAT
CATGAGCTTACCGTTTCATGGTTGCAAAGAATATCTTCCTGGAAAAAACA
ATATCCATTGTTAGTGCCAAGAAATGTTTCTTTTCTATCTGCCCAAGAAA
TATTGTATTACATTTCTAGAACTCAACCAGAAGCATATTATACAACGGAT
GTAGGGCAACACCAGATGTGGTCAGCTCAATTTCTAAATGTGTTACCTCG
CCACTGGATGTCAAGTTCTGGATTAGGAACAATGGGCTATGGATTACCTG
CTGCTATTGGTGTTCAATTTGCTCAAATAGACAAATTAGTGATTTGTGTA
AGCGGTGATGCTAGTTTTCAGATGAATCTTCAAGAGCTTGGTACCATTTC
GCAGTATAATTTACCTATCAAAATTCTTGTTATTAATAATAAATGGCAAG
GTATGGTTCGACAATGGCAGCAAGCTTTTTATGGTGAAAGATATTCTCAT
TCTAATATGGAAAAAGGTTCACCTAATCTAGTAAAATTAGCCCAATCTTT
TAATATTTTAGGTTTACAGTTAGATTCAAGAGATAACATGGAAAACATGA
TAGATTTATTTTGTAATTATGATGGTCCTGCTATTCTTAATTGTAATGTA
CGAGAAACAGAGAATTGTTATCCAATGGTAGCTCCCGGCAAAAGTAACTC
TCAGATGATTGGTTTAGAGAAAAATTATATTAGTAATAAGAAGTAA

protein sequence of Gvermi13672.t1

>Gvermi13672.t1 ID=Gvermi13672.t1|Name=Gvermi13672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=582bp
MCSNSFVSGSYALIDTLVRNGTYHIFGYPGGAILPIYDELFRWEEKHLVQ
HILCRHEQGAVHAADGYARSSGKVGVCFATSGPGATNLVTGIATAQMDSI
PLILITGQVARAFIGTDAFQEVDIFGITLPIVKHSYVVRDPTDMSRIISE
AFYIAQNGRPGPVLVDIPKDVGLEKFAYKFVPKSSIKLSGCKPTIAVKEK
HFDKFLSLIKQSSQPLLYVGGGAISSNASFCIQRLAEKFRIPITTTLMGK
GVIQENHLLSLGMLGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEF
ACNAQVVHIDVDSAELGKNRIPQVAIVGDLKTVIKNFLTYVNQFEENEFN
HELTVSWLQRISSWKKQYPLLVPRNVSFLSAQEILYYISRTQPEAYYTTD
VGQHQMWSAQFLNVLPRHWMSSSGLGTMGYGLPAAIGVQFAQIDKLVICV
SGDASFQMNLQELGTISQYNLPIKILVINNKWQGMVRQWQQAFYGERYSH
SNMEKGSPNLVKLAQSFNILGLQLDSRDNMENMIDLFCNYDGPAILNCNV
RETENCYPMVAPGKSNSQMIGLEKNYISNKK*

mRNA from alignment at ScGOVlb_59:64387..66132+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13672.t1 ID=Gvermi13672.t1|Name=Gvermi13672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at ScGOVlb_59:64387..66132+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTTCTAATTCTTTTGTGAGTGGTTCTTATGCTCTAATTGATACATT
GGTTCGTAATGGTACCTATCACATCTTTGGTTATCCTGGTGGTGCTATTT
TACCTATATATGATGAATTATTCCGTTGGGAAGAAAAGCATTTAGTACAG
CATATATTATGTAGACATGAACAAGGTGCTGTACATGCAGCAGATGGTTA
TGCTCGATCATCTGGTAAAGTAGGTGTATGTTTTGCAACATCTGGACCTG
GCGCTACTAATTTAGTAACCGGCATTGCTACTGCACAAATGGATTCTATT
CCACTAATTTTAATTACTGGTCAAGTAGCACGTGCTTTTATTGGTACAGA
TGCATTTCAAGAAGTTGATATTTTTGGCATCACCTTACCCATTGTTAAAC
ATTCTTATGTTGTCAGAGATCCTACAGACATGAGTCGTATTATTTCAGAA
GCTTTCTATATTGCTCAAAATGGTAGACCAGGACCTGTTTTAGTAGATAT
TCCTAAAGATGTCGGTCTCGAAAAATTTGCCTACAAATTTGTCCCTAAAT
CTAGTATCAAATTATCTGGCTGTAAACCTACAATAGCAGTGAAAGAAAAA
CATTTTGATAAATTTTTAAGTTTGATTAAGCAATCAAGTCAGCCTTTATT
ATATGTCGGTGGCGGTGCTATTAGTTCAAATGCTTCTTTTTGTATACAGA
GACTGGCTGAAAAATTTAGAATACCTATTACAACCACGTTAATGGGTAAA
GGTGTTATACAAGAAAATCATTTATTATCCCTAGGTATGCTCGGTATGCA
TGGTACTGCTTACGCGAATTTTGCAGTTAGTGAATGTGATTTGTTAATTG
CTTTAGGAGCACGTTTTGATGATAGGGTAACAGGAAAACTAGATGAATTT
GCTTGTAATGCACAAGTAGTGCATATTGATGTTGATTCTGCTGAGTTGGG
TAAGAATCGCATACCTCAAGTTGCAATTGTTGGGGATTTAAAAACTGTTA
TAAAGAATTTTTTGACTTATGTTAACCAATTTGAAGAAAATGAATTTAAT
CATGAGCTTACCGTTTCATGGTTGCAAAGAATATCTTCCTGGAAAAAACA
ATATCCATTGTTAGTGCCAAGAAATGTTTCTTTTCTATCTGCCCAAGAAA
TATTGTATTACATTTCTAGAACTCAACCAGAAGCATATTATACAACGGAT
GTAGGGCAACACCAGATGTGGTCAGCTCAATTTCTAAATGTGTTACCTCG
CCACTGGATGTCAAGTTCTGGATTAGGAACAATGGGCTATGGATTACCTG
CTGCTATTGGTGTTCAATTTGCTCAAATAGACAAATTAGTGATTTGTGTA
AGCGGTGATGCTAGTTTTCAGATGAATCTTCAAGAGCTTGGTACCATTTC
GCAGTATAATTTACCTATCAAAATTCTTGTTATTAATAATAAATGGCAAG
GTATGGTTCGACAATGGCAGCAAGCTTTTTATGGTGAAAGATATTCTCAT
TCTAATATGGAAAAAGGTTCACCTAATCTAGTAAAATTAGCCCAATCTTT
TAATATTTTAGGTTTACAGTTAGATTCAAGAGATAACATGGAAAACATGA
TAGATTTATTTTGTAATTATGATGGTCCTGCTATTCTTAATTGTAATGTA
CGAGAAACAGAGAATTGTTATCCAATGGTAGCTCCCGGCAAAAGTAACTC
TCAGATGATTGGTTTAGAGAAAAATTATATTAGTAATAAGAAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_59:64387..66132+

>Gvermi13672.t1 ID=Gvermi13672.t1|Name=Gvermi13672.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1746bp|location=Sequence derived from alignment at ScGOVlb_59:64387..66132+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTTCTAATTCTTTTGTGAGTGGTTCTTATGCTCTAATTGATACATT
GGTTCGTAATGGTACCTATCACATCTTTGGTTATCCTGGTGGTGCTATTT
TACCTATATATGATGAATTATTCCGTTGGGAAGAAAAGCATTTAGTACAG
CATATATTATGTAGACATGAACAAGGTGCTGTACATGCAGCAGATGGTTA
TGCTCGATCATCTGGTAAAGTAGGTGTATGTTTTGCAACATCTGGACCTG
GCGCTACTAATTTAGTAACCGGCATTGCTACTGCACAAATGGATTCTATT
CCACTAATTTTAATTACTGGTCAAGTAGCACGTGCTTTTATTGGTACAGA
TGCATTTCAAGAAGTTGATATTTTTGGCATCACCTTACCCATTGTTAAAC
ATTCTTATGTTGTCAGAGATCCTACAGACATGAGTCGTATTATTTCAGAA
GCTTTCTATATTGCTCAAAATGGTAGACCAGGACCTGTTTTAGTAGATAT
TCCTAAAGATGTCGGTCTCGAAAAATTTGCCTACAAATTTGTCCCTAAAT
CTAGTATCAAATTATCTGGCTGTAAACCTACAATAGCAGTGAAAGAAAAA
CATTTTGATAAATTTTTAAGTTTGATTAAGCAATCAAGTCAGCCTTTATT
ATATGTCGGTGGCGGTGCTATTAGTTCAAATGCTTCTTTTTGTATACAGA
GACTGGCTGAAAAATTTAGAATACCTATTACAACCACGTTAATGGGTAAA
GGTGTTATACAAGAAAATCATTTATTATCCCTAGGTATGCTCGGTATGCA
TGGTACTGCTTACGCGAATTTTGCAGTTAGTGAATGTGATTTGTTAATTG
CTTTAGGAGCACGTTTTGATGATAGGGTAACAGGAAAACTAGATGAATTT
GCTTGTAATGCACAAGTAGTGCATATTGATGTTGATTCTGCTGAGTTGGG
TAAGAATCGCATACCTCAAGTTGCAATTGTTGGGGATTTAAAAACTGTTA
TAAAGAATTTTTTGACTTATGTTAACCAATTTGAAGAAAATGAATTTAAT
CATGAGCTTACCGTTTCATGGTTGCAAAGAATATCTTCCTGGAAAAAACA
ATATCCATTGTTAGTGCCAAGAAATGTTTCTTTTCTATCTGCCCAAGAAA
TATTGTATTACATTTCTAGAACTCAACCAGAAGCATATTATACAACGGAT
GTAGGGCAACACCAGATGTGGTCAGCTCAATTTCTAAATGTGTTACCTCG
CCACTGGATGTCAAGTTCTGGATTAGGAACAATGGGCTATGGATTACCTG
CTGCTATTGGTGTTCAATTTGCTCAAATAGACAAATTAGTGATTTGTGTA
AGCGGTGATGCTAGTTTTCAGATGAATCTTCAAGAGCTTGGTACCATTTC
GCAGTATAATTTACCTATCAAAATTCTTGTTATTAATAATAAATGGCAAG
GTATGGTTCGACAATGGCAGCAAGCTTTTTATGGTGAAAGATATTCTCAT
TCTAATATGGAAAAAGGTTCACCTAATCTAGTAAAATTAGCCCAATCTTT
TAATATTTTAGGTTTACAGTTAGATTCAAGAGATAACATGGAAAACATGA
TAGATTTATTTTGTAATTATGATGGTCCTGCTATTCTTAATTGTAATGTA
CGAGAAACAGAGAATTGTTATCCAATGGTAGCTCCCGGCAAAAGTAACTC
TCAGATGATTGGTTTAGAGAAAAATTATATTAGTAATAAGAAGTAA