Gvermi13671.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13671.t1
Unique NameGvermi13671.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:63218..64078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1541065.JRFE01000025_gene1946
Preferred nameargB
PFAMsAA_kinase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002,RC00043
KEGG koko:K00930
KEGG ReactionR02649
KEGG Pathwayko00220,ko01100,ko01110,ko01130,ko01210,ko01230,map00220,map01100,map01110,map01130,map01210,map01230
KEGG ModuleM00028
GOsGO:0003674,GO:0003824,GO:0003991,GO:0005488,GO:0005515,GO:0006082,GO:0006520,GO:0006525,GO:0006526,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016597,GO:0016740,GO:0016772,GO:0016774,GO:0019752,GO:0031406,GO:0034618,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.65e-86
EggNOG OGsCOG0548@1|root,COG0548@2|Bacteria,1G0R4@1117|Cyanobacteria,3VI6J@52604|Pleurocapsales
EC2.7.2.8
DescriptionBelongs to the acetylglutamate kinase family. ArgB subfamily
COG categoryE
BiGG ReactioniJN678.argB
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13671Gvermi13671Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 63218..64078 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13671.t1.stop1Gvermi13671.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 63218..63220 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13671.t1.CDS1Gvermi13671.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 63218..64078 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13671.t1.exon1Gvermi13671.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 63218..64078 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13671.t1.start1Gvermi13671.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 64076..64078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13671.t1Gvermi13671.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 63218..64078 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13671.t1 ID=Gvermi13671.t1|Name=Gvermi13671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp
MSNRIIGNRFYISPEVISSIKAYSGATFVIKYGGSVMKDKLLQYNMIQDI
SLLSSCGIHIILVHGGGYAINQWLEKLDIQPVFNNGVRVTDRDSIEVVEM
VLSASVNKHLVLELNNNHIPAVGLSGKDANLIKASSLSGMDDDYTGKIDC
VDPSILRILLSNGLMPVVSSIASDSSGNTYNVNADTVASYIAGSISADKY
ILMTDTPGVLKDSSNPKTLIRNLDIGQVNTLKAQGLISGGMIPKLDSCIY
ALVHNVQQAHIIDGRLRYSLLSEILTSEGSGSTIVK*
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spliced messenger RNA

>Gvermi13671.t1 ID=Gvermi13671.t1|Name=Gvermi13671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_59:63218..64078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAACCGTATTATTGGTAATCGTTTTTATATTTCTCCCGAAGTTAT
ATCTTCAATCAAGGCTTATTCTGGAGCTACATTTGTTATTAAATATGGAG
GTTCAGTAATGAAAGATAAACTTCTCCAATACAATATGATACAAGATATT
TCTTTACTATCATCCTGTGGTATACATATTATATTAGTTCATGGTGGTGG
TTATGCTATTAATCAATGGTTAGAGAAATTAGATATCCAGCCTGTATTTA
ATAATGGTGTTCGTGTCACAGATAGAGATAGTATCGAGGTTGTAGAAATG
GTTTTAAGTGCTAGTGTTAATAAACACTTAGTTTTGGAATTAAATAATAA
TCACATTCCAGCTGTTGGTTTATCGGGTAAAGATGCTAATTTAATTAAGG
CATCATCATTATCAGGTATGGATGATGATTATACAGGTAAGATAGACTGT
GTAGATCCTTCCATACTTCGTATTTTGTTATCTAATGGTTTAATGCCTGT
TGTATCTAGTATTGCTTCTGATTCTTCTGGTAATACCTATAATGTTAATG
CAGATACAGTTGCTAGCTATATTGCTGGATCTATTAGTGCTGACAAGTAT
ATTCTTATGACAGATACACCTGGTGTTTTAAAAGATAGTAGTAATCCTAA
AACATTAATTAGAAATTTAGACATAGGTCAAGTTAATACACTAAAAGCTC
AAGGATTAATTTCAGGAGGTATGATACCTAAGCTCGACTCTTGTATCTAT
GCTCTAGTTCATAATGTTCAACAAGCACACATTATTGACGGTAGATTGAG
GTATTCTCTTTTGAGTGAGATTCTCACTTCTGAAGGAAGTGGTTCAACAA
TCGTCAAGTAA
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protein sequence of Gvermi13671.t1

>Gvermi13671.t1 ID=Gvermi13671.t1|Name=Gvermi13671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
MSNRIIGNRFYISPEVISSIKAYSGATFVIKYGGSVMKDKLLQYNMIQDI
SLLSSCGIHIILVHGGGYAINQWLEKLDIQPVFNNGVRVTDRDSIEVVEM
VLSASVNKHLVLELNNNHIPAVGLSGKDANLIKASSLSGMDDDYTGKIDC
VDPSILRILLSNGLMPVVSSIASDSSGNTYNVNADTVASYIAGSISADKY
ILMTDTPGVLKDSSNPKTLIRNLDIGQVNTLKAQGLISGGMIPKLDSCIY
ALVHNVQQAHIIDGRLRYSLLSEILTSEGSGSTIVK*
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mRNA from alignment at ScGOVlb_59:63218..64078-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13671.t1 ID=Gvermi13671.t1|Name=Gvermi13671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=861bp|location=Sequence derived from alignment at ScGOVlb_59:63218..64078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAAACCGTATTATTGGTAATCGTTTTTATATTTCTCCCGAAGTTAT
ATCTTCAATCAAGGCTTATTCTGGAGCTACATTTGTTATTAAATATGGAG
GTTCAGTAATGAAAGATAAACTTCTCCAATACAATATGATACAAGATATT
TCTTTACTATCATCCTGTGGTATACATATTATATTAGTTCATGGTGGTGG
TTATGCTATTAATCAATGGTTAGAGAAATTAGATATCCAGCCTGTATTTA
ATAATGGTGTTCGTGTCACAGATAGAGATAGTATCGAGGTTGTAGAAATG
GTTTTAAGTGCTAGTGTTAATAAACACTTAGTTTTGGAATTAAATAATAA
TCACATTCCAGCTGTTGGTTTATCGGGTAAAGATGCTAATTTAATTAAGG
CATCATCATTATCAGGTATGGATGATGATTATACAGGTAAGATAGACTGT
GTAGATCCTTCCATACTTCGTATTTTGTTATCTAATGGTTTAATGCCTGT
TGTATCTAGTATTGCTTCTGATTCTTCTGGTAATACCTATAATGTTAATG
CAGATACAGTTGCTAGCTATATTGCTGGATCTATTAGTGCTGACAAGTAT
ATTCTTATGACAGATACACCTGGTGTTTTAAAAGATAGTAGTAATCCTAA
AACATTAATTAGAAATTTAGACATAGGTCAAGTTAATACACTAAAAGCTC
AAGGATTAATTTCAGGAGGTATGATACCTAAGCTCGACTCTTGTATCTAT
GCTCTAGTTCATAATGTTCAACAAGCACACATTATTGACGGTAGATTGAG
GTATTCTCTTTTGAGTGAGATTCTCACTTCTGAAGGAAGTGGTTCAACAA
TCGTCAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:63218..64078-

>Gvermi13671.t1 ID=Gvermi13671.t1|Name=Gvermi13671.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=861bp|location=Sequence derived from alignment at ScGOVlb_59:63218..64078- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCAAACCGTATTATTGGTAATCGTTTTTATATTTCTCCCGAAGTTAT
ATCTTCAATCAAGGCTTATTCTGGAGCTACATTTGTTATTAAATATGGAG
GTTCAGTAATGAAAGATAAACTTCTCCAATACAATATGATACAAGATATT
TCTTTACTATCATCCTGTGGTATACATATTATATTAGTTCATGGTGGTGG
TTATGCTATTAATCAATGGTTAGAGAAATTAGATATCCAGCCTGTATTTA
ATAATGGTGTTCGTGTCACAGATAGAGATAGTATCGAGGTTGTAGAAATG
GTTTTAAGTGCTAGTGTTAATAAACACTTAGTTTTGGAATTAAATAATAA
TCACATTCCAGCTGTTGGTTTATCGGGTAAAGATGCTAATTTAATTAAGG
CATCATCATTATCAGGTATGGATGATGATTATACAGGTAAGATAGACTGT
GTAGATCCTTCCATACTTCGTATTTTGTTATCTAATGGTTTAATGCCTGT
TGTATCTAGTATTGCTTCTGATTCTTCTGGTAATACCTATAATGTTAATG
CAGATACAGTTGCTAGCTATATTGCTGGATCTATTAGTGCTGACAAGTAT
ATTCTTATGACAGATACACCTGGTGTTTTAAAAGATAGTAGTAATCCTAA
AACATTAATTAGAAATTTAGACATAGGTCAAGTTAATACACTAAAAGCTC
AAGGATTAATTTCAGGAGGTATGATACCTAAGCTCGACTCTTGTATCTAT
GCTCTAGTTCATAATGTTCAACAAGCACACATTATTGACGGTAGATTGAG
GTATTCTCTTTTGAGTGAGATTCTCACTTCTGAAGGAAGTGGTTCAACAA
TCGTCAAGTAA
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