Gvermi13670.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13670.t1
Unique Name	Gvermi13670.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	514

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:58913..60454 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	159749.E7BWH1
Preferred name	psbB
PFAMs	PSII
Max annot lvl	2836\|Bacillariophyta
KEGG ko	ko:K02704
KEGG Pathway	ko00195,ko01100,map00195,map01100
KEGG Module	M00161
Evalue	0.0
EggNOG OGs	28JG1@1\|root,2QRV6@2759\|Eukaryota,2XEM0@2836\|Bacillariophyta
Description	One of the components of the core complex of photosystem II (PSII). It binds chlorophyll and helps catalyze the primary light-induced photochemical processes of PSII. PSII is a light- driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation
COG category	P
BRITE	ko00000,ko00001,ko00002,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13670	Gvermi13670	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 58913..60454 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13670.t1.start1	Gvermi13670.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 58913..58915 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13670.t1.CDS1	Gvermi13670.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 58913..60454 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13670.t1.exon1	Gvermi13670.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 58913..60454 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13670.t1.stop1	Gvermi13670.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 60452..60454 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13670.t1	Gvermi13670.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 58913..60454 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:58913..60454+
coding sequence from alignment at ScGOVlb_59:58913..60454+

mRNA sequence

>Gvermi13670.t1 ID=Gvermi13670.t1|Name=Gvermi13670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=514bp
MALPWYRVHTVVLNDPGRLISVHLMHTALVAGXXXXWAGSMALYELAVFD
PSDPVLNPMWRQGMFVMPFMTRIGVTDSWGGWSVTGESVSNPGLWSFEGV
AITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLS
SLLCFGFGAFHTTGLFGPGIWISDGYGITGKVQPIAPAWGPDGFNPFNPS
GVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVF
FSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGA
TPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIF
QDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVG
VTVNFYGGKLNGKSFNDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSS
PRGWFTFGHANFALIFFFGHLWHGSRTIFRDVFAGIGAEVTEQVEFGAFQ
KLGDRSSKKQGAV*

spliced messenger RNA

>Gvermi13670.t1 ID=Gvermi13670.t1|Name=Gvermi13670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_59:58913..60454+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTACCATGGTATCGCGTACATACAGTAGTTTTAAATGATCCCGG
TAGATTAATTTCTGTACACTTAATGCATACTGCACTAGTAGCAGGCNNNN
NNNNNNGCTGGGCAGGTTCAATGGCACTATATGAACTAGCAGTATTTGAT
CCTTCAGATCCAGTACTTAATCCCATGTGGAGGCAAGGCATGTTTGTTAT
GCCTTTCATGACAAGAATTGGAGTAACAGACTCTTGGGGAGGATGGAGTG
TAACCGGTGAAAGCGTATCTAACCCAGGACTTTGGAGTTTTGAAGGAGTT
GCCATAACACACATAGTATTATCAGGAATGCTATTTCTAGCATCAATATG
GCACTGGGTATACTGGGATTTAGAACTTTTTAGAGATCCTAGAACAGGTG
AACCAGCATTAGATTTACCAAAAATATTTGGAATTCACCTACTACTTTCT
AGCCTACTATGCTTTGGCTTTGGAGCATTTCATACAACTGGTTTATTCGG
ACCAGGAATATGGATATCAGATGGTTACGGAATAACAGGAAAAGTACAAC
CAATAGCACCTGCATGGGGACCAGACGGTTTTAATCCTTTTAATCCCAGT
GGAGTAGCATCACATCACATAGCAGCAGGTACTGTAGGTATTCTAGCTGG
ATTATTTCATCTAACAGTGAGACCACCACAAAGATTATACCGTGCACTTA
GAATGGGAAATATAGAAACAGTACTATCAAGTAGTATATCAGCTGTATTT
TTTAGCGCTTTCGTTACATGTGGAACAATGTGGTATGGATCAGCAACGAC
ACCAATAGAACTTTTTGGGCCAACTAGATATCAATGGGATAGTGGTTATT
TTCAACAAGAAATTGAGCGTAGAGTTGAAAATTCATTAAACGAAGGAGCA
ACTCCCGAAGAAGCATGGTCAAAAATTCCGGACAAACTAGCATTTTATGA
CTACATAGGAAATAATCCAGCTAAAGGAGGTCTTTTTAGAGCTGGCCCAA
TGGACAAAGGAGATGGTATTGCAGAAGCCTGGTTAGGACACCCCATTTTT
CAAGACAAGGAAGGAAGAGAATTAACGGTAAGAAGAATGCCTGCATTTTT
TGAAACTTTCCCAGTTATTTTAGTAGATAAAGATGGTATTATTAGAGCAG
ACATACCATTTAGAAGAGCGGAGTCAAAGTATAGTATAGAACAAGTAGGA
GTAACAGTAAACTTCTATGGAGGTAAATTAAATGGAAAGTCATTTAATGA
CGCACCAAGTGTAAAAAAATATGCTAGAAAAGCACAATTAGGCGAAGTTT
TCGAGTTTGATAGAACTACTCTAGAATCTGATGGTGTATTCAGAAGCAGT
CCAAGAGGATGGTTTACATTTGGGCATGCAAATTTTGCATTAATCTTTTT
CTTCGGACATTTATGGCATGGATCACGTACTATATTTAGAGATGTGTTTG
CAGGAATAGGTgctgaagttacagaacaagtggaattcggcgcattccag
aaacttggggatagaagtagtaaaaaacaaggtgctgtTTAA

protein sequence of Gvermi13670.t1

>Gvermi13670.t1 ID=Gvermi13670.t1|Name=Gvermi13670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=514bp
MALPWYRVHTVVLNDPGRLISVHLMHTALVAGXXXXWAGSMALYELAVFD
PSDPVLNPMWRQGMFVMPFMTRIGVTDSWGGWSVTGESVSNPGLWSFEGV
AITHIVLSGMLFLASIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLS
SLLCFGFGAFHTTGLFGPGIWISDGYGITGKVQPIAPAWGPDGFNPFNPS
GVASHHIAAGTVGILAGLFHLTVRPPQRLYRALRMGNIETVLSSSISAVF
FSAFVTCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGA
TPEEAWSKIPDKLAFYDYIGNNPAKGGLFRAGPMDKGDGIAEAWLGHPIF
QDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVG
VTVNFYGGKLNGKSFNDAPSVKKYARKAQLGEVFEFDRTTLESDGVFRSS
PRGWFTFGHANFALIFFFGHLWHGSRTIFRDVFAGIGAEVTEQVEFGAFQ
KLGDRSSKKQGAV*

mRNA from alignment at ScGOVlb_59:58913..60454+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13670.t1 ID=Gvermi13670.t1|Name=Gvermi13670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at ScGOVlb_59:58913..60454+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTACCATGGTATCGCGTACATACAGTAGTTTTAAATGATCCCGG
TAGATTAATTTCTGTACACTTAATGCATACTGCACTAGTAGCAGGCNNNN
NNNNNNGCTGGGCAGGTTCAATGGCACTATATGAACTAGCAGTATTTGAT
CCTTCAGATCCAGTACTTAATCCCATGTGGAGGCAAGGCATGTTTGTTAT
GCCTTTCATGACAAGAATTGGAGTAACAGACTCTTGGGGAGGATGGAGTG
TAACCGGTGAAAGCGTATCTAACCCAGGACTTTGGAGTTTTGAAGGAGTT
GCCATAACACACATAGTATTATCAGGAATGCTATTTCTAGCATCAATATG
GCACTGGGTATACTGGGATTTAGAACTTTTTAGAGATCCTAGAACAGGTG
AACCAGCATTAGATTTACCAAAAATATTTGGAATTCACCTACTACTTTCT
AGCCTACTATGCTTTGGCTTTGGAGCATTTCATACAACTGGTTTATTCGG
ACCAGGAATATGGATATCAGATGGTTACGGAATAACAGGAAAAGTACAAC
CAATAGCACCTGCATGGGGACCAGACGGTTTTAATCCTTTTAATCCCAGT
GGAGTAGCATCACATCACATAGCAGCAGGTACTGTAGGTATTCTAGCTGG
ATTATTTCATCTAACAGTGAGACCACCACAAAGATTATACCGTGCACTTA
GAATGGGAAATATAGAAACAGTACTATCAAGTAGTATATCAGCTGTATTT
TTTAGCGCTTTCGTTACATGTGGAACAATGTGGTATGGATCAGCAACGAC
ACCAATAGAACTTTTTGGGCCAACTAGATATCAATGGGATAGTGGTTATT
TTCAACAAGAAATTGAGCGTAGAGTTGAAAATTCATTAAACGAAGGAGCA
ACTCCCGAAGAAGCATGGTCAAAAATTCCGGACAAACTAGCATTTTATGA
CTACATAGGAAATAATCCAGCTAAAGGAGGTCTTTTTAGAGCTGGCCCAA
TGGACAAAGGAGATGGTATTGCAGAAGCCTGGTTAGGACACCCCATTTTT
CAAGACAAGGAAGGAAGAGAATTAACGGTAAGAAGAATGCCTGCATTTTT
TGAAACTTTCCCAGTTATTTTAGTAGATAAAGATGGTATTATTAGAGCAG
ACATACCATTTAGAAGAGCGGAGTCAAAGTATAGTATAGAACAAGTAGGA
GTAACAGTAAACTTCTATGGAGGTAAATTAAATGGAAAGTCATTTAATGA
CGCACCAAGTGTAAAAAAATATGCTAGAAAAGCACAATTAGGCGAAGTTT
TCGAGTTTGATAGAACTACTCTAGAATCTGATGGTGTATTCAGAAGCAGT
CCAAGAGGATGGTTTACATTTGGGCATGCAAATTTTGCATTAATCTTTTT
CTTCGGACATTTATGGCATGGATCACGTACTATATTTAGAGATGTGTTTG
CAGGAATAGGTgctgaagttacagaacaagtggaattcggcgcattccag
aaacttggggatagaagtagtaaaaaacaaggtgctgtTTAA

Coding sequence (CDS) from alignment at ScGOVlb_59:58913..60454+

>Gvermi13670.t1 ID=Gvermi13670.t1|Name=Gvermi13670.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1542bp|location=Sequence derived from alignment at ScGOVlb_59:58913..60454+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATTACCATGGTATCGCGTACATACAGTAGTTTTAAATGATCCCGG
TAGATTAATTTCTGTACACTTAATGCATACTGCACTAGTAGCAGGCNNNN
NNNNNNGCTGGGCAGGTTCAATGGCACTATATGAACTAGCAGTATTTGAT
CCTTCAGATCCAGTACTTAATCCCATGTGGAGGCAAGGCATGTTTGTTAT
GCCTTTCATGACAAGAATTGGAGTAACAGACTCTTGGGGAGGATGGAGTG
TAACCGGTGAAAGCGTATCTAACCCAGGACTTTGGAGTTTTGAAGGAGTT
GCCATAACACACATAGTATTATCAGGAATGCTATTTCTAGCATCAATATG
GCACTGGGTATACTGGGATTTAGAACTTTTTAGAGATCCTAGAACAGGTG
AACCAGCATTAGATTTACCAAAAATATTTGGAATTCACCTACTACTTTCT
AGCCTACTATGCTTTGGCTTTGGAGCATTTCATACAACTGGTTTATTCGG
ACCAGGAATATGGATATCAGATGGTTACGGAATAACAGGAAAAGTACAAC
CAATAGCACCTGCATGGGGACCAGACGGTTTTAATCCTTTTAATCCCAGT
GGAGTAGCATCACATCACATAGCAGCAGGTACTGTAGGTATTCTAGCTGG
ATTATTTCATCTAACAGTGAGACCACCACAAAGATTATACCGTGCACTTA
GAATGGGAAATATAGAAACAGTACTATCAAGTAGTATATCAGCTGTATTT
TTTAGCGCTTTCGTTACATGTGGAACAATGTGGTATGGATCAGCAACGAC
ACCAATAGAACTTTTTGGGCCAACTAGATATCAATGGGATAGTGGTTATT
TTCAACAAGAAATTGAGCGTAGAGTTGAAAATTCATTAAACGAAGGAGCA
ACTCCCGAAGAAGCATGGTCAAAAATTCCGGACAAACTAGCATTTTATGA
CTACATAGGAAATAATCCAGCTAAAGGAGGTCTTTTTAGAGCTGGCCCAA
TGGACAAAGGAGATGGTATTGCAGAAGCCTGGTTAGGACACCCCATTTTT
CAAGACAAGGAAGGAAGAGAATTAACGGTAAGAAGAATGCCTGCATTTTT
TGAAACTTTCCCAGTTATTTTAGTAGATAAAGATGGTATTATTAGAGCAG
ACATACCATTTAGAAGAGCGGAGTCAAAGTATAGTATAGAACAAGTAGGA
GTAACAGTAAACTTCTATGGAGGTAAATTAAATGGAAAGTCATTTAATGA
CGCACCAAGTGTAAAAAAATATGCTAGAAAAGCACAATTAGGCGAAGTTT
TCGAGTTTGATAGAACTACTCTAGAATCTGATGGTGTATTCAGAAGCAGT
CCAAGAGGATGGTTTACATTTGGGCATGCAAATTTTGCATTAATCTTTTT
CTTCGGACATTTATGGCATGGATCACGTACTATATTTAGAGATGTGTTTG
CAGGAATAGGTgctgaagttacagaacaagtggaattcggcgcattccag
aaacttggggatagaagtagtaaaaaacaaggtgctgtTTAA