Gvermi13669.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13669.t1
Unique Name	Gvermi13669.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	410

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:55704..56933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705004.1
Preferred name	tufA
PFAMs	GTP_EFTU,GTP_EFTU_D2,GTP_EFTU_D3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02358
GOs	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0009295,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0016020,GO:0020011,GO:0031967,GO:0031974,GO:0031975,GO:0031976,GO:0031981,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048046,GO:0055035,GO:0070013
Evalue	3.87e-253
EggNOG OGs	COG0050@1\|root,KOG0460@2759\|Eukaryota
Description	translation elongation factor activity
COG category	J
BRITE	ko00000,ko03012,ko03029,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13669	Gvermi13669	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 55704..56933 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13669.t1.start1	Gvermi13669.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 55704..55706 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13669.t1.CDS1	Gvermi13669.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 55704..56933 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13669.t1.exon1	Gvermi13669.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 55704..56933 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13669.t1.stop1	Gvermi13669.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 56931..56933 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13669.t1	Gvermi13669.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 55704..56933 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:55704..56933+
coding sequence from alignment at ScGOVlb_59:55704..56933+

mRNA sequence

>Gvermi13669.t1 ID=Gvermi13669.t1|Name=Gvermi13669.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=410bp
MAREKFERKKPHVNIGTIGHVDHGKTTLTAAISATLAAANQGQAKKFDEI
DAAPEEKARGITINTAHIEYETDDRHYAHVDCPGHADYVKNMITGAAQMD
GAILVVSAVDGAMPQTREHILLAKQVGVPNIVVFLNKQDQVEDDELRELV
ELEVRELLEKYDFPGDSIPFVAGSALLALETVTENVSTQRGDNEWVDKIH
SLMDAVDSYIPTPQRDTEKTFLMAVEDVFSITGRGTVATGRIERGIIKVG
DTIEIVGLQDTKTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKLDIQRG
MVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTG
TINQFTADDGSTAEMVMPGDRIKMSAELIHPIAIEQGMRFAIREGGRTVG
AGVVSKILK*

spliced messenger RNA

>Gvermi13669.t1 ID=Gvermi13669.t1|Name=Gvermi13669.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at ScGOVlb_59:55704..56933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGTGAAAAATTTGAAAGAAAAAAACCACACGTCAATATAGGTAC
GATTGGTCATGTAGATCATGGAAAAACAACACTAACCGCAGCTATATCTG
CAACTTTAGCAGCAGCTAACCAGGGTCAAGCTAAAAAATTTGACGAGATA
GATGCAGCACCTGAAGAAAAAGCGAGAGGTATTACAATTAATACAGCACA
TATAGAGTATGAAACAGATGATAGGCATTATGCTCATGTAGATTGTCCAG
GACATGCAGATTATGTAAAAAATATGATTACAGGAGCAGCACAAATGGAT
GGTGCAATATTAGTTGTATCAGCTGTTGACGGAGCTATGCCACAAACAAG
AGAACATATATTACTAGCTAAACAAGTAGGTGTACCTAATATTGTAGTTT
TCCTAAACAAACAAGATCAAGTAGAAGATGATGAATTGCGCGAACTAGTA
GAATTAGAAGTAAGAGAATTACTAGAAAAATACGATTTCCCAGGTGATAG
TATACCCTTCGTTGCAGGTTCAGCATTATTAGCGCTAGAAACTGTAACAG
AAAATGTAAGTACACAAAGAGGAGATAATGAATGGGTTGATAAAATTCAT
TCTTTAATGGATGCAGTAGATTCCTACATTCCAACTCCTCAAAGAGATAC
AGAAAAAACATTTCTCATGGCAGTTGAAGATGTATTCTCTATCACAGGAA
GAGGAACTGTAGCAACAGGAAGAATTGAAAGAGGGATAATAAAAGTAGGA
GATACTATAGAAATAGTTGGCTTGCAAGATACAAAAACGACAACAATAAC
TGGTCTAGAAATGTTTCAAAAAACTCTAGATGAAGGCATGGCAGGCGATA
ATATAGGAATACTATTAAGAGGTGTACAAAAACTTGATATTCAGAGAGGC
ATGGTTTTAGCGCAACCAGGAACTATAACACCACACACACAATTTGAAGC
TGAAGTATATATATTAACTAAAGAAGAAGGTGGAAGACATACTCCCTTCT
TCTCAGGCTACAGACCGCAATTTTATGTTAGAACAACTGACGTTACAGGT
ACAATAAATCAGTTTACTGCAGATGATGGATCAACTGCAGAAATGGTAAT
GCCAGGTGATAGAATAAAAATGAGCGCTGAACTAATACATCCAATAGCAA
TAGAACAAGGGATGAGATTTGCTATTCGAGAAGGTGGAAGAACAGTAGGA
GCTGGTGTAGTATCAAAGATATTAAAATAA

protein sequence of Gvermi13669.t1

>Gvermi13669.t1 ID=Gvermi13669.t1|Name=Gvermi13669.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=410bp
MAREKFERKKPHVNIGTIGHVDHGKTTLTAAISATLAAANQGQAKKFDEI
DAAPEEKARGITINTAHIEYETDDRHYAHVDCPGHADYVKNMITGAAQMD
GAILVVSAVDGAMPQTREHILLAKQVGVPNIVVFLNKQDQVEDDELRELV
ELEVRELLEKYDFPGDSIPFVAGSALLALETVTENVSTQRGDNEWVDKIH
SLMDAVDSYIPTPQRDTEKTFLMAVEDVFSITGRGTVATGRIERGIIKVG
DTIEIVGLQDTKTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKLDIQRG
MVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTG
TINQFTADDGSTAEMVMPGDRIKMSAELIHPIAIEQGMRFAIREGGRTVG
AGVVSKILK*

mRNA from alignment at ScGOVlb_59:55704..56933+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13669.t1 ID=Gvermi13669.t1|Name=Gvermi13669.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at ScGOVlb_59:55704..56933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACGTGAAAAATTTGAAAGAAAAAAACCACACGTCAATATAGGTAC
GATTGGTCATGTAGATCATGGAAAAACAACACTAACCGCAGCTATATCTG
CAACTTTAGCAGCAGCTAACCAGGGTCAAGCTAAAAAATTTGACGAGATA
GATGCAGCACCTGAAGAAAAAGCGAGAGGTATTACAATTAATACAGCACA
TATAGAGTATGAAACAGATGATAGGCATTATGCTCATGTAGATTGTCCAG
GACATGCAGATTATGTAAAAAATATGATTACAGGAGCAGCACAAATGGAT
GGTGCAATATTAGTTGTATCAGCTGTTGACGGAGCTATGCCACAAACAAG
AGAACATATATTACTAGCTAAACAAGTAGGTGTACCTAATATTGTAGTTT
TCCTAAACAAACAAGATCAAGTAGAAGATGATGAATTGCGCGAACTAGTA
GAATTAGAAGTAAGAGAATTACTAGAAAAATACGATTTCCCAGGTGATAG
TATACCCTTCGTTGCAGGTTCAGCATTATTAGCGCTAGAAACTGTAACAG
AAAATGTAAGTACACAAAGAGGAGATAATGAATGGGTTGATAAAATTCAT
TCTTTAATGGATGCAGTAGATTCCTACATTCCAACTCCTCAAAGAGATAC
AGAAAAAACATTTCTCATGGCAGTTGAAGATGTATTCTCTATCACAGGAA
GAGGAACTGTAGCAACAGGAAGAATTGAAAGAGGGATAATAAAAGTAGGA
GATACTATAGAAATAGTTGGCTTGCAAGATACAAAAACGACAACAATAAC
TGGTCTAGAAATGTTTCAAAAAACTCTAGATGAAGGCATGGCAGGCGATA
ATATAGGAATACTATTAAGAGGTGTACAAAAACTTGATATTCAGAGAGGC
ATGGTTTTAGCGCAACCAGGAACTATAACACCACACACACAATTTGAAGC
TGAAGTATATATATTAACTAAAGAAGAAGGTGGAAGACATACTCCCTTCT
TCTCAGGCTACAGACCGCAATTTTATGTTAGAACAACTGACGTTACAGGT
ACAATAAATCAGTTTACTGCAGATGATGGATCAACTGCAGAAATGGTAAT
GCCAGGTGATAGAATAAAAATGAGCGCTGAACTAATACATCCAATAGCAA
TAGAACAAGGGATGAGATTTGCTATTCGAGAAGGTGGAAGAACAGTAGGA
GCTGGTGTAGTATCAAAGATATTAAAATAA

Coding sequence (CDS) from alignment at ScGOVlb_59:55704..56933+

>Gvermi13669.t1 ID=Gvermi13669.t1|Name=Gvermi13669.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1230bp|location=Sequence derived from alignment at ScGOVlb_59:55704..56933+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACGTGAAAAATTTGAAAGAAAAAAACCACACGTCAATATAGGTAC
GATTGGTCATGTAGATCATGGAAAAACAACACTAACCGCAGCTATATCTG
CAACTTTAGCAGCAGCTAACCAGGGTCAAGCTAAAAAATTTGACGAGATA
GATGCAGCACCTGAAGAAAAAGCGAGAGGTATTACAATTAATACAGCACA
TATAGAGTATGAAACAGATGATAGGCATTATGCTCATGTAGATTGTCCAG
GACATGCAGATTATGTAAAAAATATGATTACAGGAGCAGCACAAATGGAT
GGTGCAATATTAGTTGTATCAGCTGTTGACGGAGCTATGCCACAAACAAG
AGAACATATATTACTAGCTAAACAAGTAGGTGTACCTAATATTGTAGTTT
TCCTAAACAAACAAGATCAAGTAGAAGATGATGAATTGCGCGAACTAGTA
GAATTAGAAGTAAGAGAATTACTAGAAAAATACGATTTCCCAGGTGATAG
TATACCCTTCGTTGCAGGTTCAGCATTATTAGCGCTAGAAACTGTAACAG
AAAATGTAAGTACACAAAGAGGAGATAATGAATGGGTTGATAAAATTCAT
TCTTTAATGGATGCAGTAGATTCCTACATTCCAACTCCTCAAAGAGATAC
AGAAAAAACATTTCTCATGGCAGTTGAAGATGTATTCTCTATCACAGGAA
GAGGAACTGTAGCAACAGGAAGAATTGAAAGAGGGATAATAAAAGTAGGA
GATACTATAGAAATAGTTGGCTTGCAAGATACAAAAACGACAACAATAAC
TGGTCTAGAAATGTTTCAAAAAACTCTAGATGAAGGCATGGCAGGCGATA
ATATAGGAATACTATTAAGAGGTGTACAAAAACTTGATATTCAGAGAGGC
ATGGTTTTAGCGCAACCAGGAACTATAACACCACACACACAATTTGAAGC
TGAAGTATATATATTAACTAAAGAAGAAGGTGGAAGACATACTCCCTTCT
TCTCAGGCTACAGACCGCAATTTTATGTTAGAACAACTGACGTTACAGGT
ACAATAAATCAGTTTACTGCAGATGATGGATCAACTGCAGAAATGGTAAT
GCCAGGTGATAGAATAAAAATGAGCGCTGAACTAATACATCCAATAGCAA
TAGAACAAGGGATGAGATTTGCTATTCGAGAAGGTGGAAGAACAGTAGGA
GCTGGTGTAGTATCAAAGATATTAAAATAA