Gvermi13667.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13667.t1
Unique NameGvermi13667.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:41225..42646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705015.1
Preferred namednaK
PFAMsHSP70
Max annot lvl2759|Eukaryota
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
GOsGO:0000166,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006605,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009408,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009941,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0017076,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042221,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045036,GO:0045184,GO:0046686,GO:0046907,GO:0048046,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072596,GO:0072598,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Evalue5.15e-206
EggNOG OGsCOG0443@1|root,KOG0102@2759|Eukaryota
Descriptionunfolded protein binding
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13667Gvermi13667Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 41225..42646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13667.t1.stop1Gvermi13667.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 41225..41227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13667.t1.CDS1Gvermi13667.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 41225..42646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13667.t1.exon1Gvermi13667.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 41225..42646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13667.t1.start1Gvermi13667.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 42644..42646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13667.t1Gvermi13667.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 41225..42646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13667.t1 ID=Gvermi13667.t1|Name=Gvermi13667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp
MTKVVGIDLGTTNSVIAVMEGGKPVVISNKEGLRTTPSVVAYTKKQDKLV
GNIAKRQAVMNPENTFYSVKRFIGRKYDEVKGDVNQLSYEVKSDNDVNIK
LDCPALDKNFAPEEISAQVLRKLVEDASTYLGQSVTKAVITVPAYFNDSQ
RQATKDAGQIAGLDVLRIINEPTAASLSYGLEKKDNETILVFDLGGGTFD
VSVLEVGDGVFEVLSTSGDTNLGGDDFDYKIVDWLVSEFKNDEGIDLSKD
RQSLQRLTEAAEKAKMELSGLLQTDINLPFITSTDTGPKHLEKNITRAKF
EELCSDLISRCKIPVDNALKDAQLSSVDIDEVVLVGGSTRIPAIQNLVKD
YIGKEPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXWAHNKVKVAPSIQPRALSITQGRAVGL
AHYLLGGIGTTWAFFLARIISVG*
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spliced messenger RNA

>Gvermi13667.t1 ID=Gvermi13667.t1|Name=Gvermi13667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_59:41225..42646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAAAGTAGTAGGAATTGATTTAGGTACAACTAATTCTGTTATTGC
TGTTATGGAAGGTGGTAAGCCAGTTGTAATATCAAATAAAGAAGGATTAC
GTACAACACCCTCTGTTGTTGCTTATACTAAAAAGCAAGATAAGTTGGTT
GGAAATATTGCCAAAAGACAAGCAGTTATGAATCCTGAGAATACTTTTTA
TTCAGTGAAAAGATTCATTGGTCGTAAATATGATGAAGTTAAAGGCGACG
TTAATCAGCTATCTTATGAGGTAAAAAGTGATAACGATGTTAATATTAAA
TTAGATTGCCCTGCTTTGGATAAAAATTTTGCACCTGAAGAAATATCTGC
TCAGGTTTTAAGAAAGCTTGTAGAAGATGCTAGTACTTATCTAGGTCAGT
CAGTAACCAAAGCAGTAATAACTGTCCCTGCGTATTTTAATGATTCACAA
AGGCAAGCGACTAAAGATGCTGGGCAAATAGCTGGTTTAGATGTTCTAAG
GATTATTAACGAGCCTACAGCAGCATCACTTTCTTATGGCTTAGAGAAGA
AAGACAATGAAACAATACTAGTGTTTGATCTAGGAGGAGGTACTTTTGAT
GTTTCTGTTTTAGAAGTAGGTGATGGTGTATTTGAAGTACTTTCTACATC
TGGAGATACTAATCTAGGTGGAGATGATTTTGATTATAAAATTGTTGATT
GGTTGGTTTCAGAATTTAAGAATGATGAAGGAATAGACTTAAGTAAAGAT
AGGCAGTCTTTACAAAGATTAACAGAAGCAGCAGAAAAAGCTAAAATGGA
ATTATCAGGTCTTTTACAGACAGATATTAATTTGCCTTTTATTACTTCAA
CTGATACTGGACCTAAGCATTTAGAAAAAAATATTACTCGTGCAAAGTTT
GAAGAACTATGTTCAGATTTAATATCACGCTGCAAAATACCTGTAGATAA
TGCTTTAAAAGATGCCCAATTAAGTTCTGTAGATATAGATGAAGTTGTGT
TAGTTGGTGGTTCTACCAGAATACCAGCTATACAGAACTTAGTTAAAGAT
TATATAGGTAAAGAACCTAATCAGAGTGTAAATCCAGATGAAGTCGTAGC
TATTGGTGCAGCTGTTCAGGCAGGAGTTTTAGCTGGTGAAGTAAAAGATA
TCTTATTGCTTGATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGTGGGCTCACAATAAAGTTAAAGTAGCACCAT
CGATACAACCAAGAGCATTAAGTATCACACAAGGAAGAGCAGTAGGACTA
GCTCACTATTTATTAGGTGGAATAGGAACAACTTGGGCGTTTTTCCTAGC
TAGAATAATATCAGTAGGATAA
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protein sequence of Gvermi13667.t1

>Gvermi13667.t1 ID=Gvermi13667.t1|Name=Gvermi13667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=474bp
MTKVVGIDLGTTNSVIAVMEGGKPVVISNKEGLRTTPSVVAYTKKQDKLV
GNIAKRQAVMNPENTFYSVKRFIGRKYDEVKGDVNQLSYEVKSDNDVNIK
LDCPALDKNFAPEEISAQVLRKLVEDASTYLGQSVTKAVITVPAYFNDSQ
RQATKDAGQIAGLDVLRIINEPTAASLSYGLEKKDNETILVFDLGGGTFD
VSVLEVGDGVFEVLSTSGDTNLGGDDFDYKIVDWLVSEFKNDEGIDLSKD
RQSLQRLTEAAEKAKMELSGLLQTDINLPFITSTDTGPKHLEKNITRAKF
EELCSDLISRCKIPVDNALKDAQLSSVDIDEVVLVGGSTRIPAIQNLVKD
YIGKEPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXWAHNKVKVAPSIQPRALSITQGRAVGL
AHYLLGGIGTTWAFFLARIISVG*
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mRNA from alignment at ScGOVlb_59:41225..42646-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13667.t1 ID=Gvermi13667.t1|Name=Gvermi13667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_59:41225..42646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTAAAGTAGTAGGAATTGATTTAGGTACAACTAATTCTGTTATTGC
TGTTATGGAAGGTGGTAAGCCAGTTGTAATATCAAATAAAGAAGGATTAC
GTACAACACCCTCTGTTGTTGCTTATACTAAAAAGCAAGATAAGTTGGTT
GGAAATATTGCCAAAAGACAAGCAGTTATGAATCCTGAGAATACTTTTTA
TTCAGTGAAAAGATTCATTGGTCGTAAATATGATGAAGTTAAAGGCGACG
TTAATCAGCTATCTTATGAGGTAAAAAGTGATAACGATGTTAATATTAAA
TTAGATTGCCCTGCTTTGGATAAAAATTTTGCACCTGAAGAAATATCTGC
TCAGGTTTTAAGAAAGCTTGTAGAAGATGCTAGTACTTATCTAGGTCAGT
CAGTAACCAAAGCAGTAATAACTGTCCCTGCGTATTTTAATGATTCACAA
AGGCAAGCGACTAAAGATGCTGGGCAAATAGCTGGTTTAGATGTTCTAAG
GATTATTAACGAGCCTACAGCAGCATCACTTTCTTATGGCTTAGAGAAGA
AAGACAATGAAACAATACTAGTGTTTGATCTAGGAGGAGGTACTTTTGAT
GTTTCTGTTTTAGAAGTAGGTGATGGTGTATTTGAAGTACTTTCTACATC
TGGAGATACTAATCTAGGTGGAGATGATTTTGATTATAAAATTGTTGATT
GGTTGGTTTCAGAATTTAAGAATGATGAAGGAATAGACTTAAGTAAAGAT
AGGCAGTCTTTACAAAGATTAACAGAAGCAGCAGAAAAAGCTAAAATGGA
ATTATCAGGTCTTTTACAGACAGATATTAATTTGCCTTTTATTACTTCAA
CTGATACTGGACCTAAGCATTTAGAAAAAAATATTACTCGTGCAAAGTTT
GAAGAACTATGTTCAGATTTAATATCACGCTGCAAAATACCTGTAGATAA
TGCTTTAAAAGATGCCCAATTAAGTTCTGTAGATATAGATGAAGTTGTGT
TAGTTGGTGGTTCTACCAGAATACCAGCTATACAGAACTTAGTTAAAGAT
TATATAGGTAAAGAACCTAATCAGAGTGTAAATCCAGATGAAGTCGTAGC
TATTGGTGCAGCTGTTCAGGCAGGAGTTTTAGCTGGTGAAGTAAAAGATA
TCTTATTGCTTGATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGTGGGCTCACAATAAAGTTAAAGTAGCACCAT
CGATACAACCAAGAGCATTAAGTATCACACAAGGAAGAGCAGTAGGACTA
GCTCACTATTTATTAGGTGGAATAGGAACAACTTGGGCGTTTTTCCTAGC
TAGAATAATATCAGTAGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:41225..42646-

>Gvermi13667.t1 ID=Gvermi13667.t1|Name=Gvermi13667.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1422bp|location=Sequence derived from alignment at ScGOVlb_59:41225..42646- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTAAAGTAGTAGGAATTGATTTAGGTACAACTAATTCTGTTATTGC
TGTTATGGAAGGTGGTAAGCCAGTTGTAATATCAAATAAAGAAGGATTAC
GTACAACACCCTCTGTTGTTGCTTATACTAAAAAGCAAGATAAGTTGGTT
GGAAATATTGCCAAAAGACAAGCAGTTATGAATCCTGAGAATACTTTTTA
TTCAGTGAAAAGATTCATTGGTCGTAAATATGATGAAGTTAAAGGCGACG
TTAATCAGCTATCTTATGAGGTAAAAAGTGATAACGATGTTAATATTAAA
TTAGATTGCCCTGCTTTGGATAAAAATTTTGCACCTGAAGAAATATCTGC
TCAGGTTTTAAGAAAGCTTGTAGAAGATGCTAGTACTTATCTAGGTCAGT
CAGTAACCAAAGCAGTAATAACTGTCCCTGCGTATTTTAATGATTCACAA
AGGCAAGCGACTAAAGATGCTGGGCAAATAGCTGGTTTAGATGTTCTAAG
GATTATTAACGAGCCTACAGCAGCATCACTTTCTTATGGCTTAGAGAAGA
AAGACAATGAAACAATACTAGTGTTTGATCTAGGAGGAGGTACTTTTGAT
GTTTCTGTTTTAGAAGTAGGTGATGGTGTATTTGAAGTACTTTCTACATC
TGGAGATACTAATCTAGGTGGAGATGATTTTGATTATAAAATTGTTGATT
GGTTGGTTTCAGAATTTAAGAATGATGAAGGAATAGACTTAAGTAAAGAT
AGGCAGTCTTTACAAAGATTAACAGAAGCAGCAGAAAAAGCTAAAATGGA
ATTATCAGGTCTTTTACAGACAGATATTAATTTGCCTTTTATTACTTCAA
CTGATACTGGACCTAAGCATTTAGAAAAAAATATTACTCGTGCAAAGTTT
GAAGAACTATGTTCAGATTTAATATCACGCTGCAAAATACCTGTAGATAA
TGCTTTAAAAGATGCCCAATTAAGTTCTGTAGATATAGATGAAGTTGTGT
TAGTTGGTGGTTCTACCAGAATACCAGCTATACAGAACTTAGTTAAAGAT
TATATAGGTAAAGAACCTAATCAGAGTGTAAATCCAGATGAAGTCGTAGC
TATTGGTGCAGCTGTTCAGGCAGGAGTTTTAGCTGGTGAAGTAAAAGATA
TCTTATTGCTTGATGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTGTGGGCTCACAATAAAGTTAAAGTAGCACCAT
CGATACAACCAAGAGCATTAAGTATCACACAAGGAAGAGCAGTAGGACTA
GCTCACTATTTATTAGGTGGAATAGGAACAACTTGGGCGTTTTTCCTAGC
TAGAATAATATCAGTAGGATAA
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