Gvermi13665.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13665.t1
Unique NameGvermi13665.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:33725..34327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321327.CYA_1639
Preferred nametsf
PFAMsEF_TS
Max annot lvl1117|Cyanobacteria
KEGG koko:K02357
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue1.43e-51
EggNOG OGsCOG0264@1|root,COG0264@2|Bacteria,1G00T@1117|Cyanobacteria,1GYCT@1129|Synechococcus
DescriptionAssociates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13665Gvermi13665Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 33725..34327 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13665.t1Gvermi13665.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 33725..34327 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13665.t1.start1Gvermi13665.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 33725..33727 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13665.t1.CDS1Gvermi13665.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 33725..33831 +
Gvermi13665.t1.CDS2Gvermi13665.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 33928..34327 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13665.t1.exon1Gvermi13665.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 33725..33831 +
Gvermi13665.t1.exon2Gvermi13665.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 33928..34327 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13665.t1.intron1Gvermi13665.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 33832..33927 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13665.t1.stop1Gvermi13665.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 34325..34327 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13665.t1 ID=Gvermi13665.t1|Name=Gvermi13665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=169bp
MTDCKKALEASSGDIEIAIENLRKKGLATADKKSGRQPQFQQLAKDITMQ
IAACQSVQYVSKQDIPDSFIEYEKQIELQKDDLISKPAEIKSKIAQGRVE
KRLKELSLMDQVFIKEQSITIEELVKQHISLLGENIKIRRFERFLLGEGI
DSKNKDFTTEVSDMINSK*
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spliced messenger RNA

>Gvermi13665.t1 ID=Gvermi13665.t1|Name=Gvermi13665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp|location=Sequence derived from alignment at ScGOVlb_59:33725..34327+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGATTGCAAAAAAGCACTAGAAGCTTCTAGTGGAGATATAGAAAT
TGCTATTGAAAATTTAAGGAAAAAAGGTTTAGCTACAGCAGATAAAAAAT
CTGGCAGGCAGCCTCAGTTTCAGCAACTTGCAAAGGATATTACAATGCAG
ATTGCTGCATGCCAGTCTGTTCAATATGTTTCTAAGCAAGATATACCTGA
TAGTTTTATTGAATATGAAAAACAAATAGAATTACAAAAAGATGATTTAA
TAAGTAAACCAGCCGAAATTAAAAGTAAAATAGCTCAAGGTAGAGTTGAA
AAGAGATTAAAAGAGCTATCTTTAATGGATCAAGTTTTTATTAAGGAACA
GAGTATTACTATTGAAGAACTTGTTAAACAGCATATTTCTCTTTTAGGTG
AAAATATCAAGATTAGACGTTTTGAGCGATTCTTACTAGGAGAAGGAATT
GACTCAAAAAACAAAGATTTTACTACTGAAGTTTCTGATATGATTAATTC
AAAGTAG
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protein sequence of Gvermi13665.t1

>Gvermi13665.t1 ID=Gvermi13665.t1|Name=Gvermi13665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=169bp
MTDCKKALEASSGDIEIAIENLRKKGLATADKKSGRQPQFQQLAKDITMQ
IAACQSVQYVSKQDIPDSFIEYEKQIELQKDDLISKPAEIKSKIAQGRVE
KRLKELSLMDQVFIKEQSITIEELVKQHISLLGENIKIRRFERFLLGEGI
DSKNKDFTTEVSDMINSK*
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mRNA from alignment at ScGOVlb_59:33725..34327+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13665.t1 ID=Gvermi13665.t1|Name=Gvermi13665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=603bp|location=Sequence derived from alignment at ScGOVlb_59:33725..34327+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGATTGCAAAAAAGCACTAGAAGCTTCTAGTGGAGATATAGAAAT
TGCTATTGAAAATTTAAGGAAAAAAGGTTTAGCTACAGCAGATAAAAAAT
CTGGCAGGTTAGCAGCAGAAGGTCTAATAGAAAGTTATATACATGCAGGC
TCACGTATCGGTGTTCTTCTAGAAATTAATTGCGAAACTGACTTTGTTGC
TAGGCAGCCTCAGTTTCAGCAACTTGCAAAGGATATTACAATGCAGATTG
CTGCATGCCAGTCTGTTCAATATGTTTCTAAGCAAGATATACCTGATAGT
TTTATTGAATATGAAAAACAAATAGAATTACAAAAAGATGATTTAATAAG
TAAACCAGCCGAAATTAAAAGTAAAATAGCTCAAGGTAGAGTTGAAAAGA
GATTAAAAGAGCTATCTTTAATGGATCAAGTTTTTATTAAGGAACAGAGT
ATTACTATTGAAGAACTTGTTAAACAGCATATTTCTCTTTTAGGTGAAAA
TATCAAGATTAGACGTTTTGAGCGATTCTTACTAGGAGAAGGAATTGACT
CAAAAAACAAAGATTTTACTACTGAAGTTTCTGATATGATTAATTCAAAG
TAG
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Coding sequence (CDS) from alignment at ScGOVlb_59:33725..34327+

>Gvermi13665.t1 ID=Gvermi13665.t1|Name=Gvermi13665.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=507bp|location=Sequence derived from alignment at ScGOVlb_59:33725..34327+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGATTGCAAAAAAGCACTAGAAGCTTCTAGTGGAGATATAGAAAT
TGCTATTGAAAATTTAAGGAAAAAAGGTTTAGCTACAGCAGATAAAAAAT
CTGGCAGGCAGCCTCAGTTTCAGCAACTTGCAAAGGATATTACAATGCAG
ATTGCTGCATGCCAGTCTGTTCAATATGTTTCTAAGCAAGATATACCTGA
TAGTTTTATTGAATATGAAAAACAAATAGAATTACAAAAAGATGATTTAA
TAAGTAAACCAGCCGAAATTAAAAGTAAAATAGCTCAAGGTAGAGTTGAA
AAGAGATTAAAAGAGCTATCTTTAATGGATCAAGTTTTTATTAAGGAACA
GAGTATTACTATTGAAGAACTTGTTAAACAGCATATTTCTCTTTTAGGTG
AAAATATCAAGATTAGACGTTTTGAGCGATTCTTACTAGGAGAAGGAATT
GACTCAAAAAACAAAGATTTTACTACTGAAGTTTCTGATATGATTAATTC
AAAGTAG
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