Gvermi13663.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13663.t1
Unique NameGvermi13663.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:19129..20626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.E7BWD8
Preferred nameatpB
PFAMsATP-synt_ab,ATP-synt_ab_N
Max annot lvl2836|Bacillariophyta
KEGG koko:K02112
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
Evalue7.83e-266
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota,2XE2T@2836|Bacillariophyta
EC3.6.3.14
DescriptionProduces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13663Gvermi13663Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 19129..20626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13663.t1Gvermi13663.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 19129..20626 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13663.t1.stop1Gvermi13663.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 19129..19131 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13663.t1.CDS1Gvermi13663.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 19129..19764 -
Gvermi13663.t1.CDS2Gvermi13663.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 19880..20626 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13663.t1.exon1Gvermi13663.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 19129..19764 -
Gvermi13663.t1.exon2Gvermi13663.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 19880..20626 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13663.t1.intron1Gvermi13663.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 19765..19879 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13663.t1.start1Gvermi13663.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 20624..20626 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13663.t1 ID=Gvermi13663.t1|Name=Gvermi13663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=461bp
MVQSLTQGSITQIIGPVLDIEFPNGKLPKVFNALKIQGPNDTITCEVQQL
LGDNKVRAVAMSSTEGLKRGSEVIDTEQPITVPVGIPTLGRIFNVLGEPV
DELGAVESEDSLPIHRSAPAFTQLETKPSIFETGIKVVDLLAPYRRGGKI
GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKE
SKVINAEKLTESKVALVYGQMNEPPGARMRVGLTALTMAGYLRDINKQDA
GSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKDGSITSIQAVYVPA
DDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLGSTSTMLQPDIVG
LEHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDRLTVARARKIERFL
SQPFFVAEVFTGSPGKYVSLEESIKGFQMILKGELDDLPEQAFYLVGNIE
EAISKAETLK*
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spliced messenger RNA

>Gvermi13663.t1 ID=Gvermi13663.t1|Name=Gvermi13663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at ScGOVlb_59:19129..20626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCAGTCATTAACTCAAGGATCAATAACTCAAATTATTGGCCCAGT
TTTAGATATTGAATTTCCAAATGGCAAACTTCCTAAAGTTTTTAATGCAT
TAAAAATACAAGGACCTAATGATACAATAACATGCGAAGTACAACAACTT
CTAGGGGACAATAAAGTAAGAGCTGTAGCTATGAGTTCAACTGAAGGACT
GAAGCGAGGTTCAGAGGTAATCGACACAGAACAACCAATAACTGTACCAG
TAGGTATACCTACACTAGGAAGAATTTTTAATGTATTAGGTGAACCAGTA
GATGAATTAGGAGCTGTAGAATCAGAAGATTCTCTGCCAATACATAGATC
AGCACCAGCATTTACGCAACTTGAAACTAAACCTTCTATCTTCGAGACAG
GTATTAAAGTTGTAGACTTACTAGCACCCTATAGAAGAGGTGGTAAAATA
GGACTATTCGGAGGGGCCGGTGTAGGAAAAACGGTATTAATTATGGAACT
GATTAATAATATAGCTAAAGCACATGGCGGAGTATCTGTGTTTGGTGGAG
TAGGGGAAAGAACAAGAGAAGGTAATGATCTTTACGAAGAAATGAAAGAA
TCTAAGGTAATTAATGCAGAAAAACTAACAGAATCTAAAGTTGCACTAGT
TTACGGACAAATGAATGAACCACCGGGAGCAAGAATGAGAGTAGGATTAA
CTGCTCTTACAATGGCAGGATACTTAAGAGATATAAATAAGCAGGATGCT
GGATCTGAAGTATCAGCTTTATTAGGACGTATGCCTTCAGCTGTTGGTTA
CCAACCAACACTAGCAACTGAAATGGGAGCATTACAGGAAAGAATTACTT
CAACAAAAGATGGATCTATTACTTCAATACAAGCTGTATATGTGCCAGCA
GATGATTTAACCGATCCAGCACCGGCAACAACCTTCGCACATTTAGACGC
AACTACTGTGCTATCAAGAGGACTAGCAGCTAAAGGAATTTACCCAGCTG
TAGATCCACTAGGATCTACATCAACTATGCTACAGCCAGATATTGTAGGA
CTAGAACATTACTCAACAGCACAACAAATTAAATCAACACTACAAAGATA
TAAAGAATTACAAGATATTATTGCTATATTAGGTTTAGATGAATTATCTG
AAGATGATCGTCTCACAGTAGCTAGAGCAAGGAAAATAGAGAGATTTTTA
TCTCAACCATTTTTTGTGGCAGAAGTATTTACAGGATCTCCAGGAAAATA
CGTATCACTGGAAGAATCAATAAAAGGCTTTCAAATGATTTTAAAAGGAG
AATTAGACGATTTACCTGAACAAGCTTTTTACCTAGTTGGTAACATAGAG
GAAGCTATATCAAAAGCAGAAACTTTAAAATAA
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protein sequence of Gvermi13663.t1

>Gvermi13663.t1 ID=Gvermi13663.t1|Name=Gvermi13663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=461bp
MVQSLTQGSITQIIGPVLDIEFPNGKLPKVFNALKIQGPNDTITCEVQQL
LGDNKVRAVAMSSTEGLKRGSEVIDTEQPITVPVGIPTLGRIFNVLGEPV
DELGAVESEDSLPIHRSAPAFTQLETKPSIFETGIKVVDLLAPYRRGGKI
GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYEEMKE
SKVINAEKLTESKVALVYGQMNEPPGARMRVGLTALTMAGYLRDINKQDA
GSEVSALLGRMPSAVGYQPTLATEMGALQERITSTKDGSITSIQAVYVPA
DDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLGSTSTMLQPDIVG
LEHYSTAQQIKSTLQRYKELQDIIAILGLDELSEDDRLTVARARKIERFL
SQPFFVAEVFTGSPGKYVSLEESIKGFQMILKGELDDLPEQAFYLVGNIE
EAISKAETLK*
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mRNA from alignment at ScGOVlb_59:19129..20626-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13663.t1 ID=Gvermi13663.t1|Name=Gvermi13663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1498bp|location=Sequence derived from alignment at ScGOVlb_59:19129..20626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCCAGTCATTAACTCAAGGATCAATAACTCAAATTATTGGCCCAGT
TTTAGATATTGAATTTCCAAATGGCAAACTTCCTAAAGTTTTTAATGCAT
TAAAAATACAAGGACCTAATGATACAATAACATGCGAAGTACAACAACTT
CTAGGGGACAATAAAGTAAGAGCTGTAGCTATGAGTTCAACTGAAGGACT
GAAGCGAGGTTCAGAGGTAATCGACACAGAACAACCAATAACTGTACCAG
TAGGTATACCTACACTAGGAAGAATTTTTAATGTATTAGGTGAACCAGTA
GATGAATTAGGAGCTGTAGAATCAGAAGATTCTCTGCCAATACATAGATC
AGCACCAGCATTTACGCAACTTGAAACTAAACCTTCTATCTTCGAGACAG
GTATTAAAGTTGTAGACTTACTAGCACCCTATAGAAGAGGTGGTAAAATA
GGACTATTCGGAGGGGCCGGTGTAGGAAAAACGGTATTAATTATGGAACT
GATTAATAATATAGCTAAAGCACATGGCGGAGTATCTGTGTTTGGTGGAG
TAGGGGAAAGAACAAGAGAAGGTAATGATCTTTACGAAGAAATGAAAGAA
TCTAAGGTAATTAATGCAGAAAAACTAACAGAATCTAAAGTTGCACTAGT
TTACGGACAAATGAATGAACCACCGGGAGCAAGAATGAGAGTAGGATTAA
CTGCTCTTACAATGGCAGGATACTTAAGAGATATAAATAAGCAGGATGTA
CTTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGTACAGGCTGGATCTGAAGTATCAGCTTTATTAGGACGTATGCC
TTCAGCTGTTGGTTACCAACCAACACTAGCAACTGAAATGGGAGCATTAC
AGGAAAGAATTACTTCAACAAAAGATGGATCTATTACTTCAATACAAGCT
GTATATGTGCCAGCAGATGATTTAACCGATCCAGCACCGGCAACAACCTT
CGCACATTTAGACGCAACTACTGTGCTATCAAGAGGACTAGCAGCTAAAG
GAATTTACCCAGCTGTAGATCCACTAGGATCTACATCAACTATGCTACAG
CCAGATATTGTAGGACTAGAACATTACTCAACAGCACAACAAATTAAATC
AACACTACAAAGATATAAAGAATTACAAGATATTATTGCTATATTAGGTT
TAGATGAATTATCTGAAGATGATCGTCTCACAGTAGCTAGAGCAAGGAAA
ATAGAGAGATTTTTATCTCAACCATTTTTTGTGGCAGAAGTATTTACAGG
ATCTCCAGGAAAATACGTATCACTGGAAGAATCAATAAAAGGCTTTCAAA
TGATTTTAAAAGGAGAATTAGACGATTTACCTGAACAAGCTTTTTACCTA
GTTGGTAACATAGAGGAAGCTATATCAAAAGCAGAAACTTTAAAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:19129..20626-

>Gvermi13663.t1 ID=Gvermi13663.t1|Name=Gvermi13663.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1383bp|location=Sequence derived from alignment at ScGOVlb_59:19129..20626- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCCAGTCATTAACTCAAGGATCAATAACTCAAATTATTGGCCCAGT
TTTAGATATTGAATTTCCAAATGGCAAACTTCCTAAAGTTTTTAATGCAT
TAAAAATACAAGGACCTAATGATACAATAACATGCGAAGTACAACAACTT
CTAGGGGACAATAAAGTAAGAGCTGTAGCTATGAGTTCAACTGAAGGACT
GAAGCGAGGTTCAGAGGTAATCGACACAGAACAACCAATAACTGTACCAG
TAGGTATACCTACACTAGGAAGAATTTTTAATGTATTAGGTGAACCAGTA
GATGAATTAGGAGCTGTAGAATCAGAAGATTCTCTGCCAATACATAGATC
AGCACCAGCATTTACGCAACTTGAAACTAAACCTTCTATCTTCGAGACAG
GTATTAAAGTTGTAGACTTACTAGCACCCTATAGAAGAGGTGGTAAAATA
GGACTATTCGGAGGGGCCGGTGTAGGAAAAACGGTATTAATTATGGAACT
GATTAATAATATAGCTAAAGCACATGGCGGAGTATCTGTGTTTGGTGGAG
TAGGGGAAAGAACAAGAGAAGGTAATGATCTTTACGAAGAAATGAAAGAA
TCTAAGGTAATTAATGCAGAAAAACTAACAGAATCTAAAGTTGCACTAGT
TTACGGACAAATGAATGAACCACCGGGAGCAAGAATGAGAGTAGGATTAA
CTGCTCTTACAATGGCAGGATACTTAAGAGATATAAATAAGCAGGATGCT
GGATCTGAAGTATCAGCTTTATTAGGACGTATGCCTTCAGCTGTTGGTTA
CCAACCAACACTAGCAACTGAAATGGGAGCATTACAGGAAAGAATTACTT
CAACAAAAGATGGATCTATTACTTCAATACAAGCTGTATATGTGCCAGCA
GATGATTTAACCGATCCAGCACCGGCAACAACCTTCGCACATTTAGACGC
AACTACTGTGCTATCAAGAGGACTAGCAGCTAAAGGAATTTACCCAGCTG
TAGATCCACTAGGATCTACATCAACTATGCTACAGCCAGATATTGTAGGA
CTAGAACATTACTCAACAGCACAACAAATTAAATCAACACTACAAAGATA
TAAAGAATTACAAGATATTATTGCTATATTAGGTTTAGATGAATTATCTG
AAGATGATCGTCTCACAGTAGCTAGAGCAAGGAAAATAGAGAGATTTTTA
TCTCAACCATTTTTTGTGGCAGAAGTATTTACAGGATCTCCAGGAAAATA
CGTATCACTGGAAGAATCAATAAAAGGCTTTCAAATGATTTTAAAAGGAG
AATTAGACGATTTACCTGAACAAGCTTTTTACCTAGTTGGTAACATAGAG
GAAGCTATATCAAAAGCAGAAACTTTAAAATAA
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