Gvermi13662.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13662.t1
Unique Name	Gvermi13662.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:14811..18104 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	388467.A19Y_2142
Preferred name	apcE
PFAMs	PBS_linker_poly,Phycobilisome
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K02096
KEGG Pathway	ko00196,ko01100,map00196,map01100
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0009579,GO:0016020,GO:0034357,GO:0042651,GO:0044424,GO:0044436,GO:0044464
Evalue	1.12e-159
EggNOG OGs	COG0237@1\|root,COG0448@1\|root,COG0237@2\|Bacteria,COG0448@2\|Bacteria,1G0CU@1117\|Cyanobacteria,1H8A2@1150\|Oscillatoriales
Description	Belongs to the phycobilisome linker protein family
COG category	GH
BRITE	ko00000,ko00001,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13662	Gvermi13662	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 14811..18104 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13662.t1	Gvermi13662.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 14811..18104 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13662.t1.start1	Gvermi13662.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 14811..14813 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13662.t1.CDS1	Gvermi13662.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 14811..16152 +
Gvermi13662.t1.CDS2	Gvermi13662.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 17608..18104 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13662.t1.exon1	Gvermi13662.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 14811..16152 +
Gvermi13662.t1.exon2	Gvermi13662.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 17608..18104 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13662.t1.intron1	Gvermi13662.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_59 16153..17607 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13662.t1.stop1	Gvermi13662.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 18102..18104 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:14811..18104+
coding sequence from alignment at ScGOVlb_59:14811..18104+

mRNA sequence

>Gvermi13662.t1 ID=Gvermi13662.t1|Name=Gvermi13662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=613bp
MYTTASLTSILQAEQQDRFLQLGELNQLVTFFSSGDQRIKIAELISANAD
FLVAQAANKIFVGGSPLSYLERPQVSFLDNNLSMSSSMLQQAVGNSSTNF
FDNISSSLFDTAESLPPGFKPISVVLYGNDRMKKSLRDLDWFLRYLTYSI
VAGDTNILSTNIRGLRELIDNACSSAAALVALREMRKACLSLFSENFQEQ
ELVAQYFNVLINEFESSKLSDKIRKRSSSDLQGLRLPQVYSKAGISNQRF
TMKTSLSSNEKQLVIQACYRQIFQRDIRKAYGINFQDLESQVSTGQLSVK
EFIRSLGKTVIYKKEFHQNYVDTRVIELSFRHFLGRGLSSLEEFQRYFGI
LSKVGINGLIDSLINSQEYSDYFGEETVPYLRSLGEEPQESRNWGPQLRL
FNYSSPFKKDPDFLTLFADYKSKIPNLHPYGLNNDPLPLQFGAIFPNRLE
RVSIVTKSIVNADAEARYLSPGELDRIKSFVLSGQRRLRIAQILTDNREL
IVKQGGQQLFQKRTDVVSPGGNAYGEEMTATCLRDLDYYLRLVTYGIVAG
DVTPIEEIGLVGVKEMYNSLGTPISGVAEGVRCMKNVACSLLSGEDSAEA
GFYFDYTLGAMQ*

spliced messenger RNA

>Gvermi13662.t1 ID=Gvermi13662.t1|Name=Gvermi13662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at ScGOVlb_59:14811..18104+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATACGACGGCTTCCTTGACCAGTATTTTGCAGGCAGAACAGCAAGA
TAGATTTTTGCAATTAGGTGAATTAAACCAACTTGTAACTTTTTTTAGTT
CTGGTGATCAGCGTATTAAAATTGCTGAGCTAATATCTGCTAATGCAGAT
TTTTTAGTTGCTCAAGCTGCTAACAAAATTTTTGTGGGTGGTTCTCCTCT
TTCTTATTTAGAAAGACCACAGGTTTCTTTCTTGGATAACAACTTAAGTA
TGAGTAGTTCAATGTTGCAACAAGCTGTTGGGAATTCATCAACTAACTTT
TTTGACAATATTTCATCGTCATTATTTGATACTGCCGAATCTTTACCTCC
TGGTTTCAAACCAATTAGCGTGGTTCTTTATGGTAATGATCGTATGAAAA
AATCGTTACGTGATCTTGATTGGTTCTTGAGGTATTTAACATATTCCATT
GTAGCTGGAGATACCAATATATTATCTACAAACATTCGAGGTTTAAGAGA
GCTCATTGATAATGCCTGTTCTAGTGCTGCAGCTTTAGTTGCATTACGTG
AGATGCGTAAAGCTTGTTTAAGTTTATTCAGTGAAAATTTTCAGGAGCAA
GAGTTAGTTGCGCAATATTTTAATGTTTTGATTAATGAATTTGAGTCTTC
TAAATTAAGTGATAAGATTCGCAAAAGATCATCTTCAGATTTACAAGGTT
TAAGATTACCACAAGTTTATAGTAAAGCTGGTATCTCGAATCAGCGTTTT
ACTATGAAAACTAGTCTTTCTAGTAATGAAAAACAACTTGTTATTCAAGC
TTGTTATAGACAAATTTTTCAGAGAGATATTCGAAAAGCATACGGGATTA
ATTTTCAAGATCTTGAATCTCAAGTTTCTACTGGTCAACTATCAGTTAAA
GAATTTATTCGTTCTTTAGGTAAAACAGTTATATATAAAAAAGAATTTCA
TCAAAATTATGTAGATACTCGTGTTATAGAGTTATCTTTTAGACATTTTT
TAGGAAGAGGTTTAAGTTCTTTAGAAGAATTTCAGAGATATTTTGGTATA
CTTTCTAAAGTCGGTATTAATGGTTTAATAGACAGTCTAATTAACTCTCA
GGAGTATTCAGATTATTTTGGTGAAGAAACTGTGCCTTATTTAAGATCTT
TAGGTGAAGAACCTCAAGAATCAAGAAATTGGGGACCTCAGTTGAGGTTG
TTTAATTATAGTAGTCCTTTTAAAAAAGATCCTGACTTTTTAACATTATT
TGCAGATTATAAATCTAAAATTCCTAATTTACATCCTTATGGTTTAAATA
ATGATCCATTACCACTTCAGTTTGGTGCTATTTTCCCTAATAGATTGGAA
AGAGTGAGTATAGTTACTAAATCTATTGTAAACGCAGATGCGGAAGCTAG
ATATCTTAGTCCTGGAGAATTAGATAGAATAAAAAGCTTTGTTTTATCAG
GTCAGAGACGTTTAAGAATTGCTCAAATATTAACAGATAATCGTGAACTT
ATTGTCAAGCAGGGCGGTCAACAATTATTTCAAAAAAGAACAGATGTAGT
ATCTCCTGGCGGAAATGCATACGGTGAAGAAATGACAGCGACTTGTTTAA
GAGATTTAGACTACTACTTAAGATTAGTAACATACGGTATTGTTGCTGGA
GATGTTACTCCAATTGAAGAAATTGGTTTGGTTGGTGTAAAAGAAATGTA
TAATTCACTGGGAACACCTATTTCTGGTGTAGCTGAAGGTGTTCGTTGTA
TGAAAAATGTAGCATGTTCTTTACTATCTGGTGAAGATTCAGCGGAAGCA
GGTTTTTATTTCGATTATACTCTAGGTGCTATGCAATAG

protein sequence of Gvermi13662.t1

>Gvermi13662.t1 ID=Gvermi13662.t1|Name=Gvermi13662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=613bp
MYTTASLTSILQAEQQDRFLQLGELNQLVTFFSSGDQRIKIAELISANAD
FLVAQAANKIFVGGSPLSYLERPQVSFLDNNLSMSSSMLQQAVGNSSTNF
FDNISSSLFDTAESLPPGFKPISVVLYGNDRMKKSLRDLDWFLRYLTYSI
VAGDTNILSTNIRGLRELIDNACSSAAALVALREMRKACLSLFSENFQEQ
ELVAQYFNVLINEFESSKLSDKIRKRSSSDLQGLRLPQVYSKAGISNQRF
TMKTSLSSNEKQLVIQACYRQIFQRDIRKAYGINFQDLESQVSTGQLSVK
EFIRSLGKTVIYKKEFHQNYVDTRVIELSFRHFLGRGLSSLEEFQRYFGI
LSKVGINGLIDSLINSQEYSDYFGEETVPYLRSLGEEPQESRNWGPQLRL
FNYSSPFKKDPDFLTLFADYKSKIPNLHPYGLNNDPLPLQFGAIFPNRLE
RVSIVTKSIVNADAEARYLSPGELDRIKSFVLSGQRRLRIAQILTDNREL
IVKQGGQQLFQKRTDVVSPGGNAYGEEMTATCLRDLDYYLRLVTYGIVAG
DVTPIEEIGLVGVKEMYNSLGTPISGVAEGVRCMKNVACSLLSGEDSAEA
GFYFDYTLGAMQ*

mRNA from alignment at ScGOVlb_59:14811..18104+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13662.t1 ID=Gvermi13662.t1|Name=Gvermi13662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3294bp|location=Sequence derived from alignment at ScGOVlb_59:14811..18104+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATACGACGGCTTCCTTGACCAGTATTTTGCAGGCAGAACAGCAAGA
TAGATTTTTGCAATTAGGTGAATTAAACCAACTTGTAACTTTTTTTAGTT
CTGGTGATCAGCGTATTAAAATTGCTGAGCTAATATCTGCTAATGCAGAT
TTTTTAGTTGCTCAAGCTGCTAACAAAATTTTTGTGGGTGGTTCTCCTCT
TTCTTATTTAGAAAGACCACAGGTTTCTTTCTTGGATAACAACTTAAGTA
TGAGTAGTTCAATGTTGCAACAAGCTGTTGGGAATTCATCAACTAACTTT
TTTGACAATATTTCATCGTCATTATTTGATACTGCCGAATCTTTACCTCC
TGGTTTCAAACCAATTAGCGTGGTTCTTTATGGTAATGATCGTATGAAAA
AATCGTTACGTGATCTTGATTGGTTCTTGAGGTATTTAACATATTCCATT
GTAGCTGGAGATACCAATATATTATCTACAAACATTCGAGGTTTAAGAGA
GCTCATTGATAATGCCTGTTCTAGTGCTGCAGCTTTAGTTGCATTACGTG
AGATGCGTAAAGCTTGTTTAAGTTTATTCAGTGAAAATTTTCAGGAGCAA
GAGTTAGTTGCGCAATATTTTAATGTTTTGATTAATGAATTTGAGTCTTC
TAAATTAAGTGATAAGATTCGCAAAAGATCATCTTCAGATTTACAAGGTT
TAAGATTACCACAAGTTTATAGTAAAGCTGGTATCTCGAATCAGCGTTTT
ACTATGAAAACTAGTCTTTCTAGTAATGAAAAACAACTTGTTATTCAAGC
TTGTTATAGACAAATTTTTCAGAGAGATATTCGAAAAGCATACGGGATTA
ATTTTCAAGATCTTGAATCTCAAGTTTCTACTGGTCAACTATCAGTTAAA
GAATTTATTCGTTCTTTAGGTAAAACAGTTATATATAAAAAAGAATTTCA
TCAAAATTATGTAGATACTCGTGTTATAGAGTTATCTTTTAGACATTTTT
TAGGAAGAGGTTTAAGTTCTTTAGAAGAATTTCAGAGATATTTTGGTATA
CTTTCTAAAGTCGGTATTAATGGTTTAATAGACAGTCTAATTAACTCTCA
GGAGTATTCAGATTATTTTGGTGAAGAAACTGTGCCTTATTTAAGATCTT
TAGGTGAAGAACCTCAAGAATCAAGAAATTGGGGACCTCAGTTGAGGTTG
TTTAATTATAGTAGTCCTTTTAAAAAAGATCCTGACTTTTTAACATTATT
TGCAGATTATAAATCTAAAATTCCTAATTTACATCCTTATGGTTTAAATA
ATGATCCATTACCACTTCAGTTTGGTGCTATTTTCCCTAATAGTAAGGTT
GGTTTAAAATCAAAATCTTCTTTAATAACACGTGATACAAGACGTATATT
AGTAAGATATGGACCGGGTATATACAATCAGATGAGTAGTCCTAATAAAA
GAAGTGTGGTTCCTGAAGTTATTGCACCTCGTGTTTTTAGCTTAAAGGAC
AAAAGTTTAAATTTTCAACAGGTAATATCTGCTATATATATAAGAGTGTT
TGGTAGATTTGTTTATCATGAAGAAAAATTATCATTAGTTAAATATGAGA
AACAGTTTGCAGCACGAATGATTTCTGTAAAAGATTTTATTAGATTACTT
GTTAAGTCATCTCTTTTTAGATCTTTATATTGGAATAATTTATATGTCTG
TAAAGCTATAGAGTACATACACATTAAATTGATAGGTCGTCCTACATATA
GTAGACAAGAAATTAATAAATATTTTGATATTATTTACCAAAAAGGTTAC
TATAATATGATTGATTCTATGCTAGATAGCCCGGAATATGTAGAATCATT
CAGTGATTTTATAGTTCCTTACGAACGTTATAATGCTCCATCTTCTGTAA
TGTCTAGAAATATTAATATTAATGTAAAAAATCTTCAACTTAATCGTCTA
GAACGTATCAAGAATTCTCTTTTTGGTTTTTCTGACTCAGCAATATCAGT
AGAAACTATAGATTTTAATGTTAAATTAAATCAAGGTGTAACTAAAAAAA
GAGACCAGTATAAACAATTTATACTTACAAGTTCTTCGAGTGATTCTGAT
AAAATTCAGATTTTAAGGGCCGCTTATAGACAAGTCTTTGAAAGAGATAT
TAATGTTTGTATAATGGGTTATGAGTTTATTAATTTAGAAAATTCTTTTT
TAACTTCTAATATGAATGTGAAAACTGTAATAAAACAGCTTGGCTGCTCT
GATGTATATCGTAAGGAATTTTACGACCCATATCCTAATATTAAGGTTAT
AGAGCTTGGTACAAAACATTTCTTAGGTAGGGCACCAAATAATCAAGCTG
AAATTAGATACTACAACCAAATTTTAGCTTCTAGGGGTCTGAAAGTATTT
ATTTCAATGTTAATAGATAGTGCAGAATATAGCAATATCTTTAATATTAA
TATAGTTCCGTACCGTCGTTTTCCTACATTACCAGCAGCTAATTTTCCTA
ATACAGAAAAGTTATATCAAACTTTAACAAAGCAAAATACTAAAGTTATA
GTGCCTAGTTTTAATATTTAATTTTTTGGTAACACTTTTCTTAGTATTAT
GAAACTTTCTTCTTTTAGTACTTTATCTTAAAATATATTGAGTATACACT
TAATTTTCTCATGTGCTAGAGATTTTTTATTATTCTACATATGTACATGT
TAGTCTGATATGTATATACCTTTTAGATTATAAAATAAGGTTTCTAAAAG
AATTTTGTTGAGGTATATTTACATTTAATTTATTTTCTTATAATAAGGAT
TGGAAAGAGTGAGTATAGTTACTAAATCTATTGTAAACGCAGATGCGGAA
GCTAGATATCTTAGTCCTGGAGAATTAGATAGAATAAAAAGCTTTGTTTT
ATCAGGTCAGAGACGTTTAAGAATTGCTCAAATATTAACAGATAATCGTG
AACTTATTGTCAAGCAGGGCGGTCAACAATTATTTCAAAAAAGAACAGAT
GTAGTATCTCCTGGCGGAAATGCATACGGTGAAGAAATGACAGCGACTTG
TTTAAGAGATTTAGACTACTACTTAAGATTAGTAACATACGGTATTGTTG
CTGGAGATGTTACTCCAATTGAAGAAATTGGTTTGGTTGGTGTAAAAGAA
ATGTATAATTCACTGGGAACACCTATTTCTGGTGTAGCTGAAGGTGTTCG
TTGTATGAAAAATGTAGCATGTTCTTTACTATCTGGTGAAGATTCAGCGG
AAGCAGGTTTTTATTTCGATTATACTCTAGGTGCTATGCAATAG

Coding sequence (CDS) from alignment at ScGOVlb_59:14811..18104+

>Gvermi13662.t1 ID=Gvermi13662.t1|Name=Gvermi13662.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1839bp|location=Sequence derived from alignment at ScGOVlb_59:14811..18104+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTATACGACGGCTTCCTTGACCAGTATTTTGCAGGCAGAACAGCAAGA
TAGATTTTTGCAATTAGGTGAATTAAACCAACTTGTAACTTTTTTTAGTT
CTGGTGATCAGCGTATTAAAATTGCTGAGCTAATATCTGCTAATGCAGAT
TTTTTAGTTGCTCAAGCTGCTAACAAAATTTTTGTGGGTGGTTCTCCTCT
TTCTTATTTAGAAAGACCACAGGTTTCTTTCTTGGATAACAACTTAAGTA
TGAGTAGTTCAATGTTGCAACAAGCTGTTGGGAATTCATCAACTAACTTT
TTTGACAATATTTCATCGTCATTATTTGATACTGCCGAATCTTTACCTCC
TGGTTTCAAACCAATTAGCGTGGTTCTTTATGGTAATGATCGTATGAAAA
AATCGTTACGTGATCTTGATTGGTTCTTGAGGTATTTAACATATTCCATT
GTAGCTGGAGATACCAATATATTATCTACAAACATTCGAGGTTTAAGAGA
GCTCATTGATAATGCCTGTTCTAGTGCTGCAGCTTTAGTTGCATTACGTG
AGATGCGTAAAGCTTGTTTAAGTTTATTCAGTGAAAATTTTCAGGAGCAA
GAGTTAGTTGCGCAATATTTTAATGTTTTGATTAATGAATTTGAGTCTTC
TAAATTAAGTGATAAGATTCGCAAAAGATCATCTTCAGATTTACAAGGTT
TAAGATTACCACAAGTTTATAGTAAAGCTGGTATCTCGAATCAGCGTTTT
ACTATGAAAACTAGTCTTTCTAGTAATGAAAAACAACTTGTTATTCAAGC
TTGTTATAGACAAATTTTTCAGAGAGATATTCGAAAAGCATACGGGATTA
ATTTTCAAGATCTTGAATCTCAAGTTTCTACTGGTCAACTATCAGTTAAA
GAATTTATTCGTTCTTTAGGTAAAACAGTTATATATAAAAAAGAATTTCA
TCAAAATTATGTAGATACTCGTGTTATAGAGTTATCTTTTAGACATTTTT
TAGGAAGAGGTTTAAGTTCTTTAGAAGAATTTCAGAGATATTTTGGTATA
CTTTCTAAAGTCGGTATTAATGGTTTAATAGACAGTCTAATTAACTCTCA
GGAGTATTCAGATTATTTTGGTGAAGAAACTGTGCCTTATTTAAGATCTT
TAGGTGAAGAACCTCAAGAATCAAGAAATTGGGGACCTCAGTTGAGGTTG
TTTAATTATAGTAGTCCTTTTAAAAAAGATCCTGACTTTTTAACATTATT
TGCAGATTATAAATCTAAAATTCCTAATTTACATCCTTATGGTTTAAATA
ATGATCCATTACCACTTCAGTTTGGTGCTATTTTCCCTAATAGATTGGAA
AGAGTGAGTATAGTTACTAAATCTATTGTAAACGCAGATGCGGAAGCTAG
ATATCTTAGTCCTGGAGAATTAGATAGAATAAAAAGCTTTGTTTTATCAG
GTCAGAGACGTTTAAGAATTGCTCAAATATTAACAGATAATCGTGAACTT
ATTGTCAAGCAGGGCGGTCAACAATTATTTCAAAAAAGAACAGATGTAGT
ATCTCCTGGCGGAAATGCATACGGTGAAGAAATGACAGCGACTTGTTTAA
GAGATTTAGACTACTACTTAAGATTAGTAACATACGGTATTGTTGCTGGA
GATGTTACTCCAATTGAAGAAATTGGTTTGGTTGGTGTAAAAGAAATGTA
TAATTCACTGGGAACACCTATTTCTGGTGTAGCTGAAGGTGTTCGTTGTA
TGAAAAATGTAGCATGTTCTTTACTATCTGGTGAAGATTCAGCGGAAGCA
GGTTTTTATTTCGATTATACTCTAGGTGCTATGCAATAG