Gvermi13661.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13661.t1
Unique Name	Gvermi13661.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	325

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_59	contig	ScGOVlb_59:11826..12800 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1337936.IJ00_22785
Preferred name	pdhB
PFAMs	Transket_pyr,Transketolase_C
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG ko	ko:K00162
KEGG Reaction	R00014,R00209,R01699,R03270
KEGG Pathway	ko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG Module	M00307
Evalue	8.11e-190
EggNOG OGs	COG0022@1\|root,COG0022@2\|Bacteria,1G246@1117\|Cyanobacteria,1HKJ1@1161\|Nostocales
EC	1.2.4.1
Description	Pyruvate 2-oxoglutarate dehydrogenase complex, dehydrogenase
COG category	C
BRITE	br01601,ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13661	Gvermi13661	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_59 11826..12800 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13661.t1.start1	Gvermi13661.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_59 11826..11828 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13661.t1.CDS1	Gvermi13661.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_59 11826..12800 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13661.t1.exon1	Gvermi13661.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_59 11826..12800 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13661.t1.stop1	Gvermi13661.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_59 12798..12800 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13661.t1	Gvermi13661.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_59 11826..12800 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_59:11826..12800+
coding sequence from alignment at ScGOVlb_59:11826..12800+

mRNA sequence

>Gvermi13661.t1 ID=Gvermi13661.t1|Name=Gvermi13661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=325bp
MNKVFLFDALREATDEEMQRDRSVFVLGEDVGHYGGSYKVTKDLHVKYGD
LRVLDTPIAENSFMGMAVGAAITGLRPIVEGMNMSFLLLAFNQISNNAGM
LRYTSGGNFQIPLVIRGPGGVGKQLGAEHSQRLEAYFQAIPGLKIVACST
PYNAKGLLKSAIRDNNPVIFFEHVLLYNLQDVIPSEEYFVPLDKAELVRE
GNDLTIVTYSRMRHHVMQAVETLIKDGYDPEVIDLISLKPIDIDSISRSI
GKTHKLLIVEECMRTGGIAAEIIAQVNDKYFDLLDGPVIRLSSQDIPTPY
NGMLEKATVIQPQQIVEAVKQAVG*

spliced messenger RNA

>Gvermi13661.t1 ID=Gvermi13661.t1|Name=Gvermi13661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_59:11826..12800+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAAAGTTTTTTTGTTTGATGCTTTACGTGAAGCTACTGATGAAGA
GATGCAGAGAGATAGATCTGTGTTTGTGCTTGGAGAAGATGTTGGTCATT
ATGGTGGTTCTTATAAAGTTACTAAAGATTTACATGTAAAGTATGGTGAC
TTACGTGTTTTAGACACACCAATTGCTGAAAACAGTTTTATGGGTATGGC
AGTTGGCGCTGCAATTACTGGTTTACGTCCCATTGTGGAAGGTATGAATA
TGAGTTTCTTGTTATTGGCTTTTAATCAAATTTCTAATAATGCTGGAATG
TTGCGTTATACTTCTGGTGGTAATTTTCAAATTCCATTAGTTATTCGTGG
TCCGGGAGGTGTTGGTAAGCAATTAGGTGCGGAACACTCTCAAAGGCTTG
AGGCATATTTTCAAGCAATACCTGGACTAAAAATTGTTGCTTGTTCAACT
CCTTATAATGCAAAAGGCTTGCTCAAGTCTGCTATACGTGATAATAATCC
TGTGATATTTTTTGAGCATGTTTTACTGTATAATCTACAAGATGTTATAC
CATCTGAAGAATATTTTGTTCCACTAGATAAGGCTGAGTTAGTAAGAGAA
GGTAATGATCTAACAATAGTAACTTATTCGAGAATGCGTCACCATGTTAT
GCAAGCAGTTGAAACCCTTATTAAAGATGGTTATGATCCTGAAGTTATTG
ATCTTATTTCTTTGAAACCTATTGATATTGATAGCATTTCGAGATCAATA
GGTAAAACCCATAAACTACTTATTGTCGAAGAATGTATGAGGACAGGAGG
AATTGCTGCTGAGATTATTGCACAAGTTAATGATAAATATTTTGATCTCT
TAGATGGTCCTGTGATTCGTTTATCTTCACAAGATATACCAACGCCTTAC
AATGGTATGCTTGAAAAAGCAACTGTAATCCAGCCTCAACAAATCGTTGA
GGCTGTTAAACAAGCAGTGGGTTAA

protein sequence of Gvermi13661.t1

>Gvermi13661.t1 ID=Gvermi13661.t1|Name=Gvermi13661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=325bp
MNKVFLFDALREATDEEMQRDRSVFVLGEDVGHYGGSYKVTKDLHVKYGD
LRVLDTPIAENSFMGMAVGAAITGLRPIVEGMNMSFLLLAFNQISNNAGM
LRYTSGGNFQIPLVIRGPGGVGKQLGAEHSQRLEAYFQAIPGLKIVACST
PYNAKGLLKSAIRDNNPVIFFEHVLLYNLQDVIPSEEYFVPLDKAELVRE
GNDLTIVTYSRMRHHVMQAVETLIKDGYDPEVIDLISLKPIDIDSISRSI
GKTHKLLIVEECMRTGGIAAEIIAQVNDKYFDLLDGPVIRLSSQDIPTPY
NGMLEKATVIQPQQIVEAVKQAVG*

mRNA from alignment at ScGOVlb_59:11826..12800+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13661.t1 ID=Gvermi13661.t1|Name=Gvermi13661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_59:11826..12800+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATAAAGTTTTTTTGTTTGATGCTTTACGTGAAGCTACTGATGAAGA
GATGCAGAGAGATAGATCTGTGTTTGTGCTTGGAGAAGATGTTGGTCATT
ATGGTGGTTCTTATAAAGTTACTAAAGATTTACATGTAAAGTATGGTGAC
TTACGTGTTTTAGACACACCAATTGCTGAAAACAGTTTTATGGGTATGGC
AGTTGGCGCTGCAATTACTGGTTTACGTCCCATTGTGGAAGGTATGAATA
TGAGTTTCTTGTTATTGGCTTTTAATCAAATTTCTAATAATGCTGGAATG
TTGCGTTATACTTCTGGTGGTAATTTTCAAATTCCATTAGTTATTCGTGG
TCCGGGAGGTGTTGGTAAGCAATTAGGTGCGGAACACTCTCAAAGGCTTG
AGGCATATTTTCAAGCAATACCTGGACTAAAAATTGTTGCTTGTTCAACT
CCTTATAATGCAAAAGGCTTGCTCAAGTCTGCTATACGTGATAATAATCC
TGTGATATTTTTTGAGCATGTTTTACTGTATAATCTACAAGATGTTATAC
CATCTGAAGAATATTTTGTTCCACTAGATAAGGCTGAGTTAGTAAGAGAA
GGTAATGATCTAACAATAGTAACTTATTCGAGAATGCGTCACCATGTTAT
GCAAGCAGTTGAAACCCTTATTAAAGATGGTTATGATCCTGAAGTTATTG
ATCTTATTTCTTTGAAACCTATTGATATTGATAGCATTTCGAGATCAATA
GGTAAAACCCATAAACTACTTATTGTCGAAGAATGTATGAGGACAGGAGG
AATTGCTGCTGAGATTATTGCACAAGTTAATGATAAATATTTTGATCTCT
TAGATGGTCCTGTGATTCGTTTATCTTCACAAGATATACCAACGCCTTAC
AATGGTATGCTTGAAAAAGCAACTGTAATCCAGCCTCAACAAATCGTTGA
GGCTGTTAAACAAGCAGTGGGTTAA

Coding sequence (CDS) from alignment at ScGOVlb_59:11826..12800+

>Gvermi13661.t1 ID=Gvermi13661.t1|Name=Gvermi13661.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=975bp|location=Sequence derived from alignment at ScGOVlb_59:11826..12800+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATAAAGTTTTTTTGTTTGATGCTTTACGTGAAGCTACTGATGAAGA
GATGCAGAGAGATAGATCTGTGTTTGTGCTTGGAGAAGATGTTGGTCATT
ATGGTGGTTCTTATAAAGTTACTAAAGATTTACATGTAAAGTATGGTGAC
TTACGTGTTTTAGACACACCAATTGCTGAAAACAGTTTTATGGGTATGGC
AGTTGGCGCTGCAATTACTGGTTTACGTCCCATTGTGGAAGGTATGAATA
TGAGTTTCTTGTTATTGGCTTTTAATCAAATTTCTAATAATGCTGGAATG
TTGCGTTATACTTCTGGTGGTAATTTTCAAATTCCATTAGTTATTCGTGG
TCCGGGAGGTGTTGGTAAGCAATTAGGTGCGGAACACTCTCAAAGGCTTG
AGGCATATTTTCAAGCAATACCTGGACTAAAAATTGTTGCTTGTTCAACT
CCTTATAATGCAAAAGGCTTGCTCAAGTCTGCTATACGTGATAATAATCC
TGTGATATTTTTTGAGCATGTTTTACTGTATAATCTACAAGATGTTATAC
CATCTGAAGAATATTTTGTTCCACTAGATAAGGCTGAGTTAGTAAGAGAA
GGTAATGATCTAACAATAGTAACTTATTCGAGAATGCGTCACCATGTTAT
GCAAGCAGTTGAAACCCTTATTAAAGATGGTTATGATCCTGAAGTTATTG
ATCTTATTTCTTTGAAACCTATTGATATTGATAGCATTTCGAGATCAATA
GGTAAAACCCATAAACTACTTATTGTCGAAGAATGTATGAGGACAGGAGG
AATTGCTGCTGAGATTATTGCACAAGTTAATGATAAATATTTTGATCTCT
TAGATGGTCCTGTGATTCGTTTATCTTCACAAGATATACCAACGCCTTAC
AATGGTATGCTTGAAAAAGCAACTGTAATCCAGCCTCAACAAATCGTTGA
GGCTGTTAAACAAGCAGTGGGTTAA