Gvermi13660.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13660.t1
Unique NameGvermi13660.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:11279..11770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_0441
Preferred namepdhA
PFAMsE1_dh
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Evalue5.68e-74
EggNOG OGsCOG1071@1|root,COG1071@2|Bacteria,1G00Z@1117|Cyanobacteria,1HJ2F@1161|Nostocales
EC1.2.4.1
DescriptionThe pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
COG categoryC
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13660Gvermi13660Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 11279..11770 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13660.t1.start1Gvermi13660.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 11279..11281 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13660.t1.CDS1Gvermi13660.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 11279..11770 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13660.t1.exon1Gvermi13660.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 11279..11770 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13660.t1.stop1Gvermi13660.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 11768..11770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13660.t1Gvermi13660.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 11279..11770 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13660.t1 ID=Gvermi13660.t1|Name=Gvermi13660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=164bp
MAVLWKLPIIFVVENNQWAIGMAHHRSTSSPEIYKKAQVFGLPGFEVDGM
DVLAVREVAQKAILRARSGDGPTLIEALTYRFRGHSLADPDELRSRKEKE
AWLVRDPIKNIKDYMLNSKLVDKNVLQSIETKVKNNIEEAVNFALSSPEP
NVKDLKKYLFVED*
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spliced messenger RNA

>Gvermi13660.t1 ID=Gvermi13660.t1|Name=Gvermi13660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_59:11279..11770+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTTTTATGGAAGTTACCTATAATATTTGTTGTTGAAAACAATCA
ATGGGCTATTGGTATGGCACATCATAGATCTACCTCTTCTCCTGAGATAT
ATAAAAAAGCACAAGTTTTTGGTTTACCTGGTTTTGAAGTTGATGGAATG
GATGTTTTAGCTGTACGTGAAGTTGCACAAAAAGCTATCTTAAGGGCAAG
ATCTGGTGATGGTCCTACTTTAATAGAAGCATTGACATATCGCTTTAGGG
GACATTCTTTAGCTGATCCTGATGAATTGAGATCTCGTAAGGAAAAAGAA
GCTTGGCTGGTACGTGATCCTATAAAAAATATTAAAGATTATATGCTTAA
CTCTAAATTAGTAGATAAAAATGTTCTACAAAGTATTGAGACAAAGGTTA
AAAATAATATTGAAGAAGCTGTCAATTTTGCCTTATCTAGTCCTGAACCA
AATGTTAAAGATTTGAAAAAGTATTTATTTGTAGAAGATTAA
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protein sequence of Gvermi13660.t1

>Gvermi13660.t1 ID=Gvermi13660.t1|Name=Gvermi13660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=164bp
MAVLWKLPIIFVVENNQWAIGMAHHRSTSSPEIYKKAQVFGLPGFEVDGM
DVLAVREVAQKAILRARSGDGPTLIEALTYRFRGHSLADPDELRSRKEKE
AWLVRDPIKNIKDYMLNSKLVDKNVLQSIETKVKNNIEEAVNFALSSPEP
NVKDLKKYLFVED*
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mRNA from alignment at ScGOVlb_59:11279..11770+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13660.t1 ID=Gvermi13660.t1|Name=Gvermi13660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=492bp|location=Sequence derived from alignment at ScGOVlb_59:11279..11770+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTTTTATGGAAGTTACCTATAATATTTGTTGTTGAAAACAATCA
ATGGGCTATTGGTATGGCACATCATAGATCTACCTCTTCTCCTGAGATAT
ATAAAAAAGCACAAGTTTTTGGTTTACCTGGTTTTGAAGTTGATGGAATG
GATGTTTTAGCTGTACGTGAAGTTGCACAAAAAGCTATCTTAAGGGCAAG
ATCTGGTGATGGTCCTACTTTAATAGAAGCATTGACATATCGCTTTAGGG
GACATTCTTTAGCTGATCCTGATGAATTGAGATCTCGTAAGGAAAAAGAA
GCTTGGCTGGTACGTGATCCTATAAAAAATATTAAAGATTATATGCTTAA
CTCTAAATTAGTAGATAAAAATGTTCTACAAAGTATTGAGACAAAGGTTA
AAAATAATATTGAAGAAGCTGTCAATTTTGCCTTATCTAGTCCTGAACCA
AATGTTAAAGATTTGAAAAAGTATTTATTTGTAGAAGATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_59:11279..11770+

>Gvermi13660.t1 ID=Gvermi13660.t1|Name=Gvermi13660.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=492bp|location=Sequence derived from alignment at ScGOVlb_59:11279..11770+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGTTTTATGGAAGTTACCTATAATATTTGTTGTTGAAAACAATCA
ATGGGCTATTGGTATGGCACATCATAGATCTACCTCTTCTCCTGAGATAT
ATAAAAAAGCACAAGTTTTTGGTTTACCTGGTTTTGAAGTTGATGGAATG
GATGTTTTAGCTGTACGTGAAGTTGCACAAAAAGCTATCTTAAGGGCAAG
ATCTGGTGATGGTCCTACTTTAATAGAAGCATTGACATATCGCTTTAGGG
GACATTCTTTAGCTGATCCTGATGAATTGAGATCTCGTAAGGAAAAAGAA
GCTTGGCTGGTACGTGATCCTATAAAAAATATTAAAGATTATATGCTTAA
CTCTAAATTAGTAGATAAAAATGTTCTACAAAGTATTGAGACAAAGGTTA
AAAATAATATTGAAGAAGCTGTCAATTTTGCCTTATCTAGTCCTGAACCA
AATGTTAAAGATTTGAAAAAGTATTTATTTGTAGAAGATTAA
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