Gvermi13659.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13659.t1
Unique NameGvermi13659.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:2256..4257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog395961.Cyan7425_0600
Preferred nameycf45
PFAMsAAA,AAA_30,R3H
Max annot lvl1117|Cyanobacteria
Evalue1.05e-156
EggNOG OGsCOG3854@1|root,COG3854@2|Bacteria,1G0U1@1117|Cyanobacteria,3KFUM@43988|Cyanothece
DescriptionPFAM single-stranded nucleic acid binding R3H domain protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13659Gvermi13659Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_59 2256..4257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13659.t1Gvermi13659.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_59 2256..4257 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13659.t1.start1Gvermi13659.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_59 2256..2258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13659.t1.CDS1Gvermi13659.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 2256..3255 +
Gvermi13659.t1.CDS2Gvermi13659.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_59 3989..4257 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13659.t1.exon1Gvermi13659.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 2256..3255 +
Gvermi13659.t1.exon2Gvermi13659.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_59 3989..4257 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13659.t1.intron1Gvermi13659.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_59 3256..3988 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13659.t1.stop1Gvermi13659.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_59 4255..4257 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13659.t1 ID=Gvermi13659.t1|Name=Gvermi13659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=423bp
MLIADDLEKLLAILPDFIQKPLMLHPYKKFLIEVVMDLGRRPEARFPNGP
YYLSVNNISWYDLDYCIKKIPHFSEDNRSGIECTLHRISSIKNRKGNIVG
LTFRVGRAIFGTISVMKDLLYMQKSILILGKPGVGKTTAIREMTRILADE
MQKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSRPELQHQVMIEAVENH
MPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNSLDNLIKNPVLSDL
IGGIQYVTLGDDEAKRRGSQKSILERKALPAFDVAIEIHERNSWIIHSKV
HDIVDKILHGSLASVQCRKLDSNGSISIYPQDFRIYMSVKEKDSKIFETV
RNIVAQQLGVDEKLVTLEANFANDLGADSLDTVELVMAIEEEFDIEIPDE
DAEKIATLNQAVKFIEQAVCSN*
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spliced messenger RNA

>Gvermi13659.t1 ID=Gvermi13659.t1|Name=Gvermi13659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_59:2256..4257+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAATAGCAGATGATCTGGAGAAACTTTTAGCTATTTTACCTGATTT
TATTCAAAAACCTTTAATGTTGCATCCTTATAAAAAATTTTTAATAGAAG
TTGTTATGGACTTAGGTAGAAGACCAGAAGCTCGCTTTCCAAATGGACCT
TATTACTTGTCTGTAAATAATATATCTTGGTATGATTTAGATTATTGTAT
AAAAAAGATACCCCATTTTAGTGAAGATAATAGATCTGGTATAGAATGTA
CGTTACATAGAATAAGTTCTATTAAAAATCGAAAAGGAAATATTGTAGGT
TTAACTTTTCGTGTTGGTCGTGCTATATTCGGTACTATTAGTGTTATGAA
AGATTTGCTATATATGCAGAAATCTATTCTTATATTAGGTAAGCCTGGAG
TAGGTAAAACGACTGCTATACGTGAGATGACACGAATCTTGGCAGATGAA
ATGCAAAAAAGAGTTGTTATTATTGACACATCAAATGAGATAGCTGGTGA
TGGTGATATACCACATCCTGCAATAGGACGTGCAAGACGTATGCAAGTAT
CTAGACCAGAATTACAGCATCAAGTGATGATAGAAGCTGTAGAAAATCAC
ATGCCTGAGGTTATTATTATAGATGAAATAGGTACAGAGTTAGAAGCTTT
AGCAGCACGTACAATTGCTGAAAGAGGTGTTCAACTAGTAGGTACAGCTC
ATGGTAATTCTTTAGATAATTTAATTAAAAATCCTGTTCTTTCAGATTTG
ATTGGAGGTATACAATATGTTACTTTAGGTGATGATGAGGCAAAAAGACG
TGGTTCCCAGAAAAGCATTTTAGAAAGAAAAGCTTTACCAGCGTTTGACG
TTGCTATTGAAATTCATGAGCGTAACAGTTGGATTATTCATAGTAAAGTT
CATGATATTGTTGATAAAATTCTTCATGGTTCTTTAGCATCTGTACAATG
TCGAAAATTAGATAGTAATGGTTCTATTTCAATATATCCACAGGATTTTA
GAATATATATGTCAGTGAAAGAAAAAGATTCAAAAATTTTTGAAACAGTA
CGAAATATTGTAGCGCAGCAGCTAGGTGTTGATGAGAAGTTGGTAACTTT
AGAAGCAAATTTTGCTAATGATTTAGGAGCTGATTCTTTGGATACAGTTG
AGTTAGTTATGGCTATAGAAGAAGAGTTTGACATAGAAATACCAGATGAA
GATGCTGAAAAGATTGCTACTCTTAATCAAGCTGTTAAATTTATTGAGCA
GGCTGTTTGTTCAAACTAG
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protein sequence of Gvermi13659.t1

>Gvermi13659.t1 ID=Gvermi13659.t1|Name=Gvermi13659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=423bp
MLIADDLEKLLAILPDFIQKPLMLHPYKKFLIEVVMDLGRRPEARFPNGP
YYLSVNNISWYDLDYCIKKIPHFSEDNRSGIECTLHRISSIKNRKGNIVG
LTFRVGRAIFGTISVMKDLLYMQKSILILGKPGVGKTTAIREMTRILADE
MQKRVVIIDTSNEIAGDGDIPHPAIGRARRMQVSRPELQHQVMIEAVENH
MPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNSLDNLIKNPVLSDL
IGGIQYVTLGDDEAKRRGSQKSILERKALPAFDVAIEIHERNSWIIHSKV
HDIVDKILHGSLASVQCRKLDSNGSISIYPQDFRIYMSVKEKDSKIFETV
RNIVAQQLGVDEKLVTLEANFANDLGADSLDTVELVMAIEEEFDIEIPDE
DAEKIATLNQAVKFIEQAVCSN*
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mRNA from alignment at ScGOVlb_59:2256..4257+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13659.t1 ID=Gvermi13659.t1|Name=Gvermi13659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2002bp|location=Sequence derived from alignment at ScGOVlb_59:2256..4257+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAATAGCAGATGATCTGGAGAAACTTTTAGCTATTTTACCTGATTT
TATTCAAAAACCTTTAATGTTGCATCCTTATAAAAAATTTTTAATAGAAG
TTGTTATGGACTTAGGTAGAAGACCAGAAGCTCGCTTTCCAAATGGACCT
TATTACTTGTCTGTAAATAATATATCTTGGTATGATTTAGATTATTGTAT
AAAAAAGATACCCCATTTTAGTGAAGATAATAGATCTGGTATAGAATGTA
CGTTACATAGAATAAGTTCTATTAAAAATCGAAAAGGAAATATTGTAGGT
TTAACTTTTCGTGTTGGTCGTGCTATATTCGGTACTATTAGTGTTATGAA
AGATTTGCTATATATGCAGAAATCTATTCTTATATTAGGTAAGCCTGGAG
TAGGTAAAACGACTGCTATACGTGAGATGACACGAATCTTGGCAGATGAA
ATGCAAAAAAGAGTTGTTATTATTGACACATCAAATGAGATAGCTGGTGA
TGGTGATATACCACATCCTGCAATAGGACGTGCAAGACGTATGCAAGTAT
CTAGACCAGAATTACAGCATCAAGTGATGATAGAAGCTGTAGAAAATCAC
ATGCCTGAGGTTATTATTATAGATGAAATAGGTACAGAGTTAGAAGCTTT
AGCAGCACGTACAATTGCTGAAAGAGGTGTTCAACTAGTAGGTACAGCTC
ATGGTAATTCTTTAGATAATTTAATTAAAAATCCTGTTCTTTCAGATTTG
ATTGGAGGTATACAATATGTTACTTTAGGTGATGATGAGGCAAAAAGACG
TGGTTCCCAGAAAAGCATTTTAGAAAGAAAAGCTTTACCAGCGTTTGACG
TTGCTATTGAAATTCATGAGCGTAACAGTTGGATTATTCATAGTAAAGTT
CATGATATTGTTGATAAAATTCTTCATGGTTCTTTAGCATCTGTACAATG
TCGAAAATTAGATAGTAATGGTTCTATTTCAATATATCCACAGGATTTTA
GTTCTTCTCATTTCATATTGTATAATCCTTCTTTTTCATATAGTGTTCCT
AAGACAGAGGAATATGATAAATTCCTAAGTCTTAACGAAAATAACAATCA
ATTAGACGTTAATTCTTACTTTAAGCCTAATGTTAAGTATTTAGAGCCTT
CTTTAAAATCTTTTGTAAAAAAATTATATATATATGGTATTAATATTCAG
TATGTTGAGTCATCAATTAAATACCTTAAATTATGCTTAGTATTAACAAG
GGATATTTTTAAGGCAGACTATATACTTGGATTGAAGTCAACTATTAAGT
ATAGTTCTAAAATTCGACAAGTTGCTAAACTGaagaaaattattatttat
actattaataataataatactagtagtatcaataaAGCTTTAAAAAAAAT
TTCTAGAAATGACAATAAATTTTTATCTAGCTGGTTTAACTTGTGTACCC
AAAAGAAATATAATGAACTTGATGCTTTAATCGAAGTAAGATATGCTGTA
GAAAAAATTATTTTTATTTATCAGCAGTCTGTTTCTTTACTACCAAGAAG
TGTAAATATATTAAATTTACAACTCAAGTTGATTAATCTGTATCAATTAA
ATTATTCTGTTGTTAGTATTAAAGGGTTACAGAAAttaattatttatcct
agctagttgtttatttattcattggtgtttaactatagatacaggttttt
aactaagttcttgaattatttgtttatttTAAGGAATATATATGTCAGTG
AAAGAAAAAGATTCAAAAATTTTTGAAACAGTACGAAATATTGTAGCGCA
GCAGCTAGGTGTTGATGAGAAGTTGGTAACTTTAGAAGCAAATTTTGCTA
ATGATTTAGGAGCTGATTCTTTGGATACAGTTGAGTTAGTTATGGCTATA
GAAGAAGAGTTTGACATAGAAATACCAGATGAAGATGCTGAAAAGATTGC
TACTCTTAATCAAGCTGTTAAATTTATTGAGCAGGCTGTTTGTTCAAACT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_59:2256..4257+

>Gvermi13659.t1 ID=Gvermi13659.t1|Name=Gvermi13659.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1269bp|location=Sequence derived from alignment at ScGOVlb_59:2256..4257+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAATAGCAGATGATCTGGAGAAACTTTTAGCTATTTTACCTGATTT
TATTCAAAAACCTTTAATGTTGCATCCTTATAAAAAATTTTTAATAGAAG
TTGTTATGGACTTAGGTAGAAGACCAGAAGCTCGCTTTCCAAATGGACCT
TATTACTTGTCTGTAAATAATATATCTTGGTATGATTTAGATTATTGTAT
AAAAAAGATACCCCATTTTAGTGAAGATAATAGATCTGGTATAGAATGTA
CGTTACATAGAATAAGTTCTATTAAAAATCGAAAAGGAAATATTGTAGGT
TTAACTTTTCGTGTTGGTCGTGCTATATTCGGTACTATTAGTGTTATGAA
AGATTTGCTATATATGCAGAAATCTATTCTTATATTAGGTAAGCCTGGAG
TAGGTAAAACGACTGCTATACGTGAGATGACACGAATCTTGGCAGATGAA
ATGCAAAAAAGAGTTGTTATTATTGACACATCAAATGAGATAGCTGGTGA
TGGTGATATACCACATCCTGCAATAGGACGTGCAAGACGTATGCAAGTAT
CTAGACCAGAATTACAGCATCAAGTGATGATAGAAGCTGTAGAAAATCAC
ATGCCTGAGGTTATTATTATAGATGAAATAGGTACAGAGTTAGAAGCTTT
AGCAGCACGTACAATTGCTGAAAGAGGTGTTCAACTAGTAGGTACAGCTC
ATGGTAATTCTTTAGATAATTTAATTAAAAATCCTGTTCTTTCAGATTTG
ATTGGAGGTATACAATATGTTACTTTAGGTGATGATGAGGCAAAAAGACG
TGGTTCCCAGAAAAGCATTTTAGAAAGAAAAGCTTTACCAGCGTTTGACG
TTGCTATTGAAATTCATGAGCGTAACAGTTGGATTATTCATAGTAAAGTT
CATGATATTGTTGATAAAATTCTTCATGGTTCTTTAGCATCTGTACAATG
TCGAAAATTAGATAGTAATGGTTCTATTTCAATATATCCACAGGATTTTA
GAATATATATGTCAGTGAAAGAAAAAGATTCAAAAATTTTTGAAACAGTA
CGAAATATTGTAGCGCAGCAGCTAGGTGTTGATGAGAAGTTGGTAACTTT
AGAAGCAAATTTTGCTAATGATTTAGGAGCTGATTCTTTGGATACAGTTG
AGTTAGTTATGGCTATAGAAGAAGAGTTTGACATAGAAATACCAGATGAA
GATGCTGAAAAGATTGCTACTCTTAATCAAGCTGTTAAATTTATTGAGCA
GGCTGTTTGTTCAAACTAG
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