Gvermi13599.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13599.t1
Unique NameGvermi13599.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_8154contigScGOVlb_8154:1..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr31544
PFAMsDAO
Max annot lvl2836|Bacillariophyta
Evalue1.53e-24
EggNOG OGsCOG0665@1|root,2RRAQ@2759|Eukaryota,2XAA0@2836|Bacillariophyta
DescriptionFAD dependent oxidoreductase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13599Gvermi13599Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_8154 1..453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13599.t1.CDS1Gvermi13599.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_8154 1..453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13599.t1.exon1Gvermi13599.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_8154 1..453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13599.t1.start1Gvermi13599.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_8154 451..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13599.t1Gvermi13599.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_8154 1..453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13599.t1 ID=Gvermi13599.t1|Name=Gvermi13599.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=151bp
MGVSAAVETELGSYSSSQASLDERKKDRDSLWNDNGGSDDDAFEKAAAMG
VQDSFAFDFGDKKHQHTASEPAAYIEGAEDALTVGVASSKNDTSSTSALT
AAYEAIKANKAEKSVELPVPGDDAKRPDPGFRINYVDSETCKEIEVPPYT
S
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spliced messenger RNA

>Gvermi13599.t1 ID=Gvermi13599.t1|Name=Gvermi13599.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp|location=Sequence derived from alignment at ScGOVlb_8154:1..453- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTATCGGCAGCCGTGGAGACGGAGCTAGGATCATACTCGTCGTC
TCAGGCTTCTCTAGACGAACGGAAAAAAGATCGAGATTCCTTGTGGAACG
ATAATGGTGGCAGCGACGACGATGCCTTTGAAAAGGCTGCGGCCATGGGC
GTACAAGATTCGTTTGCGTTTGATTTTGGTGACAAGAAACACCAGCACAC
TGCCAGCGAGCCTGCCGCCTACATTGAAGGTGCCGAAGACGCGTTGACTG
TCGGAGTTGCTTCCTCGAAAAACGATACTAGTAGCACCAGTGCCTTGACC
GCTGCGTATGAAGCCATTAAGGCGAACAAGGCAGAGAAATCAGTGGAGCT
ACCTGTGCCCGGAGACGATGCGAAGCGCCCTGACCCTGGATTTCGCATAA
ACTACGTCGATTCAGAGACATGCAAAGAAATTGAGGTTCCACCTTACACT
TCA
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protein sequence of Gvermi13599.t1

>Gvermi13599.t1 ID=Gvermi13599.t1|Name=Gvermi13599.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=151bp
MGVSAAVETELGSYSSSQASLDERKKDRDSLWNDNGGSDDDAFEKAAAMG
VQDSFAFDFGDKKHQHTASEPAAYIEGAEDALTVGVASSKNDTSSTSALT
AAYEAIKANKAEKSVELPVPGDDAKRPDPGFRINYVDSETCKEIEVPPYT
S
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mRNA from alignment at ScGOVlb_8154:1..453-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13599.t1 ID=Gvermi13599.t1|Name=Gvermi13599.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=453bp|location=Sequence derived from alignment at ScGOVlb_8154:1..453- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGGTATCGGCAGCCGTGGAGACGGAGCTAGGATCATACTCGTCGTC
TCAGGCTTCTCTAGACGAACGGAAAAAAGATCGAGATTCCTTGTGGAACG
ATAATGGTGGCAGCGACGACGATGCCTTTGAAAAGGCTGCGGCCATGGGC
GTACAAGATTCGTTTGCGTTTGATTTTGGTGACAAGAAACACCAGCACAC
TGCCAGCGAGCCTGCCGCCTACATTGAAGGTGCCGAAGACGCGTTGACTG
TCGGAGTTGCTTCCTCGAAAAACGATACTAGTAGCACCAGTGCCTTGACC
GCTGCGTATGAAGCCATTAAGGCGAACAAGGCAGAGAAATCAGTGGAGCT
ACCTGTGCCCGGAGACGATGCGAAGCGCCCTGACCCTGGATTTCGCATAA
ACTACGTCGATTCAGAGACATGCAAAGAAATTGAGGTTCCACCTTACACT
TCA
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Coding sequence (CDS) from alignment at ScGOVlb_8154:1..453-

>Gvermi13599.t1 ID=Gvermi13599.t1|Name=Gvermi13599.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=453bp|location=Sequence derived from alignment at ScGOVlb_8154:1..453- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGGTATCGGCAGCCGTGGAGACGGAGCTAGGATCATACTCGTCGTC
TCAGGCTTCTCTAGACGAACGGAAAAAAGATCGAGATTCCTTGTGGAACG
ATAATGGTGGCAGCGACGACGATGCCTTTGAAAAGGCTGCGGCCATGGGC
GTACAAGATTCGTTTGCGTTTGATTTTGGTGACAAGAAACACCAGCACAC
TGCCAGCGAGCCTGCCGCCTACATTGAAGGTGCCGAAGACGCGTTGACTG
TCGGAGTTGCTTCCTCGAAAAACGATACTAGTAGCACCAGTGCCTTGACC
GCTGCGTATGAAGCCATTAAGGCGAACAAGGCAGAGAAATCAGTGGAGCT
ACCTGTGCCCGGAGACGATGCGAAGCGCCCTGACCCTGGATTTCGCATAA
ACTACGTCGATTCAGAGACATGCAAAGAAATTGAGGTTCCACCTTACACT
TCA
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