Gvermi13568.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13568.t1
Unique NameGvermi13568.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length266
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6196contigScGOVlb_6196:2..917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13568Gvermi13568Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6196 2..917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13568.t1.CDS1Gvermi13568.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6196 2..195 +
Gvermi13568.t1.CDS2Gvermi13568.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6196 316..917 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13568.t1.exon1Gvermi13568.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6196 2..195 +
Gvermi13568.t1.exon2Gvermi13568.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6196 316..917 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13568.t1.intron1Gvermi13568.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_6196 196..315 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13568.t1Gvermi13568.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6196 2..917 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13568.t1 ID=Gvermi13568.t1|Name=Gvermi13568.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=266bp
XEGEEGVFQTEEGEGEENELFDDVNPEEWPSTLQRADVGDEEEGFPSFMN
YAIIPPSYWPKGENMHKSDKVGKAMDIMMESSERRGKSGNNEDGDSERSG
GGRGRIMESTPLSDYLSLEYFAERRLELKEKGFCVLAGFGCERESVGGMN
RNEETGIGKLMEFFAEYFREQPDLRVPGNRKQWNMIINTASKTDDVEGKK
GEGRFITTREGIVDALERKERTHWVVKERAELDARLGQIAALLRLANNRE
EGTRKMYAPQTGGRVL
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spliced messenger RNA

>Gvermi13568.t1 ID=Gvermi13568.t1|Name=Gvermi13568.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=796bp|location=Sequence derived from alignment at ScGOVlb_6196:2..917+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGCGAGGAGGGTGTGTTTCAGACGGAAGAAGGAGAGGGGGAGGAG
AATGAGCTGTTTGACGACGTGAATCCGGAAGAGTGGCCGAGCACACTGCA
GCGTGCAGATGTGGGTGATGAAGAAGAAGGGTTTCCGTCGTTCATGAATT
ACGCTATCATACCGCCGTCGTACTGGCCGAAAGGAgagaacatgCACAAG
AGTGACAAAGTTGGGAAGGCAATGGACATCATGATGGAAAGCAGTGAAAG
GAGGGGAAAGTCGGGGAACAATGAGGATGGGGATAGTGAAAGGAGTGGGG
GAGGGAGAGGGAGAATAATGGAATCGACTCCGCTTTCGGACTATTTAAGT
TTGGAATACTTTGCGGAACGGCGGCTGGAGTTGAAGGAAAAGGGGTTTTG
TGTATTGGCGGGTTTTGGATGTGAGAGGGAGAGTGTGGGTGGAATGAATA
GGAATGAGGAGACGGGTATTGGGAAGCTTATGGAGTTCTTTGCTGAATAC
TTTAGAGAACAACCGGATTTACGGGTACCGGGAAATAGAAAGCAATGGAA
CATGATAATCAACACTGCGTCGAAAACGGATGATGTGGAAGGAAAGAAGG
GAGAAGGGCGATTCATTACAACACGGGAGGGAATCGTGGACGCTTTGGAA
AGGAAGGAAAGGACGCATTGGGTTGTGAAAGAGCGAGCAGAATTGGACGC
TCGACTGGGACAAATCGCTGCTCTGCTGCGTCTTGCAAACAATCGAGAAG
AAGGGACGAGGAAAATGTATGCGCCGCAGACAGGTGGACGTGTTCT
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protein sequence of Gvermi13568.t1

>Gvermi13568.t1 ID=Gvermi13568.t1|Name=Gvermi13568.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=266bp
XEGEEGVFQTEEGEGEENELFDDVNPEEWPSTLQRADVGDEEEGFPSFMN
YAIIPPSYWPKGENMHKSDKVGKAMDIMMESSERRGKSGNNEDGDSERSG
GGRGRIMESTPLSDYLSLEYFAERRLELKEKGFCVLAGFGCERESVGGMN
RNEETGIGKLMEFFAEYFREQPDLRVPGNRKQWNMIINTASKTDDVEGKK
GEGRFITTREGIVDALERKERTHWVVKERAELDARLGQIAALLRLANNRE
EGTRKMYAPQTGGRVL
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mRNA from alignment at ScGOVlb_6196:2..917+

Legend: CDSpolypeptideexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13568.t1 ID=Gvermi13568.t1|Name=Gvermi13568.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=916bp|location=Sequence derived from alignment at ScGOVlb_6196:2..917+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGGCGAGGAGGGTGTGTTTCAGACGGAAGAAGGAGAGGGGGAGGAG
AATGAGCTGTTTGACGACGTGAATCCGGAAGAGTGGCCGAGCACACTGCA
GCGTGCAGATGTGGGTGATGAAGAAGAAGGGTTTCCGTCGTTCATGAATT
ACGCTATCATACCGCCGTCGTACTGGCCGAAAGGAgagaacatggtgaag
tgtgtgcaaccatggatgaaagcgattcatcttgcgcccggacaccgagg
agaattgctgtctgtggaggattatcaacggattcatcatacgatgtTTA
GGTTAGCGTCGCAGCACAAGAGTGACAAAGTTGGGAAGGCAATGGACATC
ATGATGGAAAGCAGTGAAAGGAGGGGAAAGTCGGGGAACAATGAGGATGG
GGATAGTGAAAGGAGTGGGGGAGGGAGAGGGAGAATAATGGAATCGACTC
CGCTTTCGGACTATTTAAGTTTGGAATACTTTGCGGAACGGCGGCTGGAG
TTGAAGGAAAAGGGGTTTTGTGTATTGGCGGGTTTTGGATGTGAGAGGGA
GAGTGTGGGTGGAATGAATAGGAATGAGGAGACGGGTATTGGGAAGCTTA
TGGAGTTCTTTGCTGAATACTTTAGAGAACAACCGGATTTACGGGTACCG
GGAAATAGAAAGCAATGGAACATGATAATCAACACTGCGTCGAAAACGGA
TGATGTGGAAGGAAAGAAGGGAGAAGGGCGATTCATTACAACACGGGAGG
GAATCGTGGACGCTTTGGAAAGGAAGGAAAGGACGCATTGGGTTGTGAAA
GAGCGAGCAGAATTGGACGCTCGACTGGGACAAATCGCTGCTCTGCTGCG
TCTTGCAAACAATCGAGAAGAAGGGACGAGGAAAATGTATGCGCCGCAGA
CAGGTGGACGTGTTCT
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Coding sequence (CDS) from alignment at ScGOVlb_6196:2..917+

>Gvermi13568.t1 ID=Gvermi13568.t1|Name=Gvermi13568.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=796bp|location=Sequence derived from alignment at ScGOVlb_6196:2..917+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGGCGAGGAGGGTGTGTTTCAGACGGAAGAAGGAGAGGGGGAGGAG
AATGAGCTGTTTGACGACGTGAATCCGGAAGAGTGGCCGAGCACACTGCA
GCGTGCAGATGTGGGTGATGAAGAAGAAGGGTTTCCGTCGTTCATGAATT
ACGCTATCATACCGCCGTCGTACTGGCCGAAAGGAgagaacatgCACAAG
AGTGACAAAGTTGGGAAGGCAATGGACATCATGATGGAAAGCAGTGAAAG
GAGGGGAAAGTCGGGGAACAATGAGGATGGGGATAGTGAAAGGAGTGGGG
GAGGGAGAGGGAGAATAATGGAATCGACTCCGCTTTCGGACTATTTAAGT
TTGGAATACTTTGCGGAACGGCGGCTGGAGTTGAAGGAAAAGGGGTTTTG
TGTATTGGCGGGTTTTGGATGTGAGAGGGAGAGTGTGGGTGGAATGAATA
GGAATGAGGAGACGGGTATTGGGAAGCTTATGGAGTTCTTTGCTGAATAC
TTTAGAGAACAACCGGATTTACGGGTACCGGGAAATAGAAAGCAATGGAA
CATGATAATCAACACTGCGTCGAAAACGGATGATGTGGAAGGAAAGAAGG
GAGAAGGGCGATTCATTACAACACGGGAGGGAATCGTGGACGCTTTGGAA
AGGAAGGAAAGGACGCATTGGGTTGTGAAAGAGCGAGCAGAATTGGACGC
TCGACTGGGACAAATCGCTGCTCTGCTGCGTCTTGCAAACAATCGAGAAG
AAGGGACGAGGAAAATGTATGCGCCGCAGACAGGTGGACGTGTTCT
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