Gvermi13563.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13563.t1
Unique Name	Gvermi13563.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	404

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3907	contig	ScGOVlb_3907:2..1213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13563	Gvermi13563	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3907 2..1213 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13563.t1.CDS1	Gvermi13563.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3907 2..1213 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13563.t1.exon1	Gvermi13563.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3907 2..1213 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13563.t1	Gvermi13563.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3907 2..1213 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3907:2..1213+
coding sequence from alignment at ScGOVlb_3907:2..1213+

mRNA sequence

>Gvermi13563.t1 ID=Gvermi13563.t1|Name=Gvermi13563.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=404bp
KLTARQVGHKVFVNETGPNGEPIRWTRLFTTDHYAALVEVTNAVVEAMSP
LASRYYRCTIAQPNMPARKLRGYMGDGISADTRLSFQMGQFLTAAVWKAI
QCGAMLEPNMQLFYDLSNRIIDTLIKERSTDKDTGDRKMEIMLPYAMQCV
VRYAIHCCYDMPGGENYEKPFRAEEVRNVQPYLYCNEEIVWWVWSTLSSS
WIEENNSSVVEAACGVAQIDWPTGASPYAVYEMDTEGRIPWRLRDNPRFE
GRARTDANGDEKLVDLQYIELRGTMESICQNIADRTHNPRLSAVDVEGIL
NMLKAHQVTLPGGGYVPQPRATMERWHKYTVAPTLNGEGDWEGGVKNVDH
SGNTMPMEYRAHTQNAINFRTEADMPRYQRGTRLPAVDMSEYRSRNRIYI
MPHI

spliced messenger RNA

>Gvermi13563.t1 ID=Gvermi13563.t1|Name=Gvermi13563.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at ScGOVlb_3907:2..1213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
AAGCTGACGGCGCGCCAGGTGGGCCACAAGGTGTTTGTCAACGAGACGGG
CCCCAACGGCGAGCCCATCCGCTGGACGCGGCTCTTCACCACGGACCACT
ATGCGGCTCTCGTGGAGGTGACCAACGCCGTGGTGGAGGCCATGTCGCCG
CTCGCCTCGCGCTACTACCGCTGCACCATTGCGCAGCCCAACATGCCGGC
CCGCAAGCTGCGTGGCTACATGGGCGACGGCATCTCGGCCGACACCCGGC
TGAGCTTCCAGATGGGCCAGTTCCTGACGGCCGCCGTGTGGAAGGCCATC
CAGTGCGGCGCCATGCTGGAGCCCAACATGCAGCTCTTCTATGATCTCTC
GAACCGCATCATTGACACGCTCATCAAGGAGCGCTCCACGGACAAGGACA
CGGGCGACCGCAAGATGGAGATTATGCTCCCGTACGCCATGCAGTGCGTG
GTGCGCTACGCCATCCACTGCTGCTACGACATGCCCGGGGGCGAGAACTA
TGAGAAGCCCTTTCGCGCCGAGGAAGTGCGCAACGTGCAGCCCTACCTCT
ACTGCAACGAGGAGATTGTGTGGTGGGTGTGGAGCACGCTGTCGTCGTCG
TGGATCGAGGAGAACAACAGCAGCGTGGTGGAGGCCGCCTGCGGAGTGGC
GCAGATTGACTGGCCCACGGGCGCCTCTCCCTACGCGGTCTACGAGATGG
ACACTGAGGGGCGCATCCCCTGGAGGCTGCGCGACAACCCCCGCTTTGAG
GGGCGTGCCCGCACCGACGCCAATGGGGACGAAAAGCTCGTGGACCTGCA
GTACATTGAGCTACGCGGCACCATGGAGAGCATCTGCCAGAACATTGCGG
ACCGCACACACAACCCGCGCCTCTCGGCCGTGGACGTGGAGGGCATCCTC
AACATGCTCAAAGCGCACCAGGTCACGCTCCCCGGAGGCGGGTACGTCCC
GCAGCCCCGCGCCACAATGGAGCGCTGGCACAAGTACACTGTGGCGCCCA
CCCTCAACGGGGAGGGCGACTGGGAAGGCGGCGTAAAGAATGTGGATCAC
AGCGGCAACACGATGCCCATGGAATACCGCGCGCACACGCAAAACGCCAT
TAATTTCCGCACAGAGGCTGACATGCCGCGCTACCAGCGGGGGACGCGCC
TCCCGGCCGTGGACATGTCCGAGTACCGCTCGCGCAACCGCATCTATATC
ATGCCCCACATT

protein sequence of Gvermi13563.t1

>Gvermi13563.t1 ID=Gvermi13563.t1|Name=Gvermi13563.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=404bp
KLTARQVGHKVFVNETGPNGEPIRWTRLFTTDHYAALVEVTNAVVEAMSP
LASRYYRCTIAQPNMPARKLRGYMGDGISADTRLSFQMGQFLTAAVWKAI
QCGAMLEPNMQLFYDLSNRIIDTLIKERSTDKDTGDRKMEIMLPYAMQCV
VRYAIHCCYDMPGGENYEKPFRAEEVRNVQPYLYCNEEIVWWVWSTLSSS
WIEENNSSVVEAACGVAQIDWPTGASPYAVYEMDTEGRIPWRLRDNPRFE
GRARTDANGDEKLVDLQYIELRGTMESICQNIADRTHNPRLSAVDVEGIL
NMLKAHQVTLPGGGYVPQPRATMERWHKYTVAPTLNGEGDWEGGVKNVDH
SGNTMPMEYRAHTQNAINFRTEADMPRYQRGTRLPAVDMSEYRSRNRIYI
MPHI

mRNA from alignment at ScGOVlb_3907:2..1213+

Legend: CDSpolypeptideexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13563.t1 ID=Gvermi13563.t1|Name=Gvermi13563.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1212bp|location=Sequence derived from alignment at ScGOVlb_3907:2..1213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AAGCTGACGGCGCGCCAGGTGGGCCACAAGGTGTTTGTCAACGAGACGGG
CCCCAACGGCGAGCCCATCCGCTGGACGCGGCTCTTCACCACGGACCACT
ATGCGGCTCTCGTGGAGGTGACCAACGCCGTGGTGGAGGCCATGTCGCCG
CTCGCCTCGCGCTACTACCGCTGCACCATTGCGCAGCCCAACATGCCGGC
CCGCAAGCTGCGTGGCTACATGGGCGACGGCATCTCGGCCGACACCCGGC
TGAGCTTCCAGATGGGCCAGTTCCTGACGGCCGCCGTGTGGAAGGCCATC
CAGTGCGGCGCCATGCTGGAGCCCAACATGCAGCTCTTCTATGATCTCTC
GAACCGCATCATTGACACGCTCATCAAGGAGCGCTCCACGGACAAGGACA
CGGGCGACCGCAAGATGGAGATTATGCTCCCGTACGCCATGCAGTGCGTG
GTGCGCTACGCCATCCACTGCTGCTACGACATGCCCGGGGGCGAGAACTA
TGAGAAGCCCTTTCGCGCCGAGGAAGTGCGCAACGTGCAGCCCTACCTCT
ACTGCAACGAGGAGATTGTGTGGTGGGTGTGGAGCACGCTGTCGTCGTCG
TGGATCGAGGAGAACAACAGCAGCGTGGTGGAGGCCGCCTGCGGAGTGGC
GCAGATTGACTGGCCCACGGGCGCCTCTCCCTACGCGGTCTACGAGATGG
ACACTGAGGGGCGCATCCCCTGGAGGCTGCGCGACAACCCCCGCTTTGAG
GGGCGTGCCCGCACCGACGCCAATGGGGACGAAAAGCTCGTGGACCTGCA
GTACATTGAGCTACGCGGCACCATGGAGAGCATCTGCCAGAACATTGCGG
ACCGCACACACAACCCGCGCCTCTCGGCCGTGGACGTGGAGGGCATCCTC
AACATGCTCAAAGCGCACCAGGTCACGCTCCCCGGAGGCGGGTACGTCCC
GCAGCCCCGCGCCACAATGGAGCGCTGGCACAAGTACACTGTGGCGCCCA
CCCTCAACGGGGAGGGCGACTGGGAAGGCGGCGTAAAGAATGTGGATCAC
AGCGGCAACACGATGCCCATGGAATACCGCGCGCACACGCAAAACGCCAT
TAATTTCCGCACAGAGGCTGACATGCCGCGCTACCAGCGGGGGACGCGCC
TCCCGGCCGTGGACATGTCCGAGTACCGCTCGCGCAACCGCATCTATATC
ATGCCCCACATT

Coding sequence (CDS) from alignment at ScGOVlb_3907:2..1213+

>Gvermi13563.t1 ID=Gvermi13563.t1|Name=Gvermi13563.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1212bp|location=Sequence derived from alignment at ScGOVlb_3907:2..1213+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AAGCTGACGGCGCGCCAGGTGGGCCACAAGGTGTTTGTCAACGAGACGGG
CCCCAACGGCGAGCCCATCCGCTGGACGCGGCTCTTCACCACGGACCACT
ATGCGGCTCTCGTGGAGGTGACCAACGCCGTGGTGGAGGCCATGTCGCCG
CTCGCCTCGCGCTACTACCGCTGCACCATTGCGCAGCCCAACATGCCGGC
CCGCAAGCTGCGTGGCTACATGGGCGACGGCATCTCGGCCGACACCCGGC
TGAGCTTCCAGATGGGCCAGTTCCTGACGGCCGCCGTGTGGAAGGCCATC
CAGTGCGGCGCCATGCTGGAGCCCAACATGCAGCTCTTCTATGATCTCTC
GAACCGCATCATTGACACGCTCATCAAGGAGCGCTCCACGGACAAGGACA
CGGGCGACCGCAAGATGGAGATTATGCTCCCGTACGCCATGCAGTGCGTG
GTGCGCTACGCCATCCACTGCTGCTACGACATGCCCGGGGGCGAGAACTA
TGAGAAGCCCTTTCGCGCCGAGGAAGTGCGCAACGTGCAGCCCTACCTCT
ACTGCAACGAGGAGATTGTGTGGTGGGTGTGGAGCACGCTGTCGTCGTCG
TGGATCGAGGAGAACAACAGCAGCGTGGTGGAGGCCGCCTGCGGAGTGGC
GCAGATTGACTGGCCCACGGGCGCCTCTCCCTACGCGGTCTACGAGATGG
ACACTGAGGGGCGCATCCCCTGGAGGCTGCGCGACAACCCCCGCTTTGAG
GGGCGTGCCCGCACCGACGCCAATGGGGACGAAAAGCTCGTGGACCTGCA
GTACATTGAGCTACGCGGCACCATGGAGAGCATCTGCCAGAACATTGCGG
ACCGCACACACAACCCGCGCCTCTCGGCCGTGGACGTGGAGGGCATCCTC
AACATGCTCAAAGCGCACCAGGTCACGCTCCCCGGAGGCGGGTACGTCCC
GCAGCCCCGCGCCACAATGGAGCGCTGGCACAAGTACACTGTGGCGCCCA
CCCTCAACGGGGAGGGCGACTGGGAAGGCGGCGTAAAGAATGTGGATCAC
AGCGGCAACACGATGCCCATGGAATACCGCGCGCACACGCAAAACGCCAT
TAATTTCCGCACAGAGGCTGACATGCCGCGCTACCAGCGGGGGACGCGCC
TCCCGGCCGTGGACATGTCCGAGTACCGCTCGCGCAACCGCATCTATATC
ATGCCCCACATT