Gvermi13559.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13559.t1
Unique NameGvermi13559.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7360contigScGOVlb_7360:280..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog84531.JMTZ01000025_gene4073
Preferred namecatB
PFAMsCatalase,Catalase-rel
Max annot lvl135614|Xanthomonadales
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
Evalue1.05e-25
EggNOG OGsCOG0753@1|root,COG0753@2|Bacteria,1MUXZ@1224|Proteobacteria,1RNE7@1236|Gammaproteobacteria,1X490@135614|Xanthomonadales
EC1.11.1.6
DescriptionServes to protect cells from the toxic effects of hydrogen peroxide
COG categoryP
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13559Gvermi13559Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_7360 280..651 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13559.t1.stop1Gvermi13559.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_7360 280..282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13559.t1.CDS1Gvermi13559.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7360 280..651 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13559.t1.exon1Gvermi13559.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7360 280..651 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13559.t1.start1Gvermi13559.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_7360 649..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13559.t1Gvermi13559.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_7360 280..651 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13559.t1 ID=Gvermi13559.t1|Name=Gvermi13559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=124bp
MTYEHAWNGSVNYEPNNSPGSYREDPAYRYSSMPVCGRYEQASIKKTLNF
RQAGETYRRFSPQDRRNLVGNIAADLGQVMSRTIKNTMCAHFYKADANYG
TAVANKVECDLETVKTIASGLSE*
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spliced messenger RNA

>Gvermi13559.t1 ID=Gvermi13559.t1|Name=Gvermi13559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp|location=Sequence derived from alignment at ScGOVlb_7360:280..651- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTACGAGCATGCGTGGAATGGTTCTGTCAACTACGAACCGAACAA
CTCACCTGGGTCCTACCGTGAGGACCCTGCGTATAGATACTCGAGCATGC
CGGTGTGTGGGCGCTACGAGCAGGCCAGCATTAAAAAGACGCTCAACTTC
AGACAGGCCGGTGAGACCTATCGCCGCTTTTCCCCGCAAGATCGCCGGAA
TTTGGTCGGTAACATCGCTGCCGATCTAGGACAAGTCATGTCGAGAACGA
TTAAGAACACGATGTGCGCCCATTTTTACAAGGCGGACGCAAATTATGGC
ACTGCAGTGGCCAACAAAGTTGAGTGTGATCTGGAAACCGTGAAAACGAT
AGCCAGCGGTCTGAGCGAATAG
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protein sequence of Gvermi13559.t1

>Gvermi13559.t1 ID=Gvermi13559.t1|Name=Gvermi13559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=124bp
MTYEHAWNGSVNYEPNNSPGSYREDPAYRYSSMPVCGRYEQASIKKTLNF
RQAGETYRRFSPQDRRNLVGNIAADLGQVMSRTIKNTMCAHFYKADANYG
TAVANKVECDLETVKTIASGLSE*
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mRNA from alignment at ScGOVlb_7360:280..651-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13559.t1 ID=Gvermi13559.t1|Name=Gvermi13559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp|location=Sequence derived from alignment at ScGOVlb_7360:280..651- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTACGAGCATGCGTGGAATGGTTCTGTCAACTACGAACCGAACAA
CTCACCTGGGTCCTACCGTGAGGACCCTGCGTATAGATACTCGAGCATGC
CGGTGTGTGGGCGCTACGAGCAGGCCAGCATTAAAAAGACGCTCAACTTC
AGACAGGCCGGTGAGACCTATCGCCGCTTTTCCCCGCAAGATCGCCGGAA
TTTGGTCGGTAACATCGCTGCCGATCTAGGACAAGTCATGTCGAGAACGA
TTAAGAACACGATGTGCGCCCATTTTTACAAGGCGGACGCAAATTATGGC
ACTGCAGTGGCCAACAAAGTTGAGTGTGATCTGGAAACCGTGAAAACGAT
AGCCAGCGGTCTGAGCGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_7360:280..651-

>Gvermi13559.t1 ID=Gvermi13559.t1|Name=Gvermi13559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=372bp|location=Sequence derived from alignment at ScGOVlb_7360:280..651- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTACGAGCATGCGTGGAATGGTTCTGTCAACTACGAACCGAACAA
CTCACCTGGGTCCTACCGTGAGGACCCTGCGTATAGATACTCGAGCATGC
CGGTGTGTGGGCGCTACGAGCAGGCCAGCATTAAAAAGACGCTCAACTTC
AGACAGGCCGGTGAGACCTATCGCCGCTTTTCCCCGCAAGATCGCCGGAA
TTTGGTCGGTAACATCGCTGCCGATCTAGGACAAGTCATGTCGAGAACGA
TTAAGAACACGATGTGCGCCCATTTTTACAAGGCGGACGCAAATTATGGC
ACTGCAGTGGCCAACAAAGTTGAGTGTGATCTGGAAACCGTGAAAACGAT
AGCCAGCGGTCTGAGCGAATAG
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