Gvermi13557.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13557.t1
Unique NameGvermi13557.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_878contigScGOVlb_878:1197..2439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13557Gvermi13557Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_878 1197..2439 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13557.t1.start1Gvermi13557.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_878 1197..1199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13557.t1.CDS1Gvermi13557.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_878 1197..2439 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13557.t1.exon1Gvermi13557.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_878 1197..2439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13557.t1Gvermi13557.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_878 1197..2439 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13557.t1 ID=Gvermi13557.t1|Name=Gvermi13557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=415bp
MQPLEGLPDDDPLFPYDGDGAMALGVDASSLWVDWLDFGPLDNVEDDIVD
EVRITRLRCEHPDDLVSAIERCGSQKGREEFKAHRLALLSVATNPWVCSD
AERSLFDAFADQVSRVHASFAHETLYSARQQALEWLRANYPTGEDSIAHG
GWALLALLQVYNAHAEVVLPVPVGEPWLLCWAVGHGAVGTVRLALDGGVF
SSLVERNAAAENLMTRSSEYWQWMRVGQQCTLAPESVLKKSWLERGFSPF
STRLCVAWKDRGGDRSHNAQTLLKLVTVSPNLHADIELYYCAKPHKCAYP
RYGEWKFDSETRVFELLKKSERLPRLQGNAEEEDGGGPLAIPTSPRREVN
HRRSRQEEDNEVERRRVRSKVAVSVQELSDVLLRVRDSLIRSNQLTEAES
AEAIAKLRTFGHGDX
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spliced messenger RNA

>Gvermi13557.t1 ID=Gvermi13557.t1|Name=Gvermi13557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1243bp|location=Sequence derived from alignment at ScGOVlb_878:1197..2439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCCCTTGAGGGGCTGCCAGATGATGACCCCTTGTTCCCGTATGA
TGGTGATGGAGCTATGGCGCTTGGTGTCGATGCCTCTTCTTTGTGGGTCG
ATTGGTTGGACTTTGGCCCACTTGACAATGTCGAGGATGATATAGTGGAC
GAGGTTCGCATCACCAGGCTTCGCTGTGAGCACCCTGATGACCTTGTGAG
TGCCATCGAGCGCTGCGGGTCCCAGAAAGGCCGAGAAGAGTTCAAAGCCC
ATCGTCTGGCTCTGTTGTCTGTCGCCACCAACCCATGGGTGTGTAGTGAC
GCTGAGCGTAGCTTGTTTGACGCCTTTGCTGACCAAGTGAGTCGTGTTCA
TGCGAGTTTCGCCCACGAGACACTGTACAGTGCTCGGCAGCAAGCATTGG
AATGGCTCAGAGCAAACTATCCCACTGGCGAAGATAGCATTGCGCATGGA
GGCTGGGCGTTGCTTGCTCTCCTTCAAGTGTACAATGCCCATGCTGAAGT
GGTGCTGCCTGTGCCTGTGGGTGAGCCATGGCTCTTGTGTTGGGCTGTCG
GTCACGGCGCAGTGGGAACTGTGCGTCTTGCACTTGATGGAGGCGTGTTT
TCTTCGCTTGTTGAGCGCAACGCTGCTGCAGAGAACTTGATGACACGTTC
CAGTGAGTACTGGCAGTGGATGCGAGTGGGTCAGCAGTGCACCTTGGCAC
CTGAATCAGTGCTGAAGAAGAGCTGGCTGGAACGGGGCTTCAGTCCCTTC
TCCACTCGGTTGTGTGTTGCATGGAAAGACCGTGGTGGTGATCGAAGCCA
CAATGCCCAAACTTTGTTGAAGCTTGTCACTGTTTCACCAAACTTGCATG
CTGACATTGAATTGTACTACTGTGCCAAACCGCACAAATGTGCTTACCCA
CGCTATGGAGAGTGGAAATTTGATTCTGAAACGCGTGTCTTTGAATTGTT
GAAGAAAAGTGAGCGGCTGCCACGACTCCAAGGCAACGCAGAAGAAGAAG
ATGGTGGCGGGCCCTTGGCAATTCCGACATCCCCAAGGAGGGAGGTTAAC
CATCGACGATCGCGTCAAGAGGAGGACAACGAAGTTGAGCGTCGTCGGGT
GCGAAGCAAGGTGGCTGTCTCAGTCCAAGAACTGTCTGATGTATTGCTAC
GTGTTCGAGACAGCCTCATTCGGTCCAATCAGCTGACAGAGGCTGAGAGC
GCCGAAGCTATTGCTAAGCTGCGCACTTTTGGCCATGGCGACA
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protein sequence of Gvermi13557.t1

>Gvermi13557.t1 ID=Gvermi13557.t1|Name=Gvermi13557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=415bp
MQPLEGLPDDDPLFPYDGDGAMALGVDASSLWVDWLDFGPLDNVEDDIVD
EVRITRLRCEHPDDLVSAIERCGSQKGREEFKAHRLALLSVATNPWVCSD
AERSLFDAFADQVSRVHASFAHETLYSARQQALEWLRANYPTGEDSIAHG
GWALLALLQVYNAHAEVVLPVPVGEPWLLCWAVGHGAVGTVRLALDGGVF
SSLVERNAAAENLMTRSSEYWQWMRVGQQCTLAPESVLKKSWLERGFSPF
STRLCVAWKDRGGDRSHNAQTLLKLVTVSPNLHADIELYYCAKPHKCAYP
RYGEWKFDSETRVFELLKKSERLPRLQGNAEEEDGGGPLAIPTSPRREVN
HRRSRQEEDNEVERRRVRSKVAVSVQELSDVLLRVRDSLIRSNQLTEAES
AEAIAKLRTFGHGDX
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mRNA from alignment at ScGOVlb_878:1197..2439+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13557.t1 ID=Gvermi13557.t1|Name=Gvermi13557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1243bp|location=Sequence derived from alignment at ScGOVlb_878:1197..2439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCCCTTGAGGGGCTGCCAGATGATGACCCCTTGTTCCCGTATGA
TGGTGATGGAGCTATGGCGCTTGGTGTCGATGCCTCTTCTTTGTGGGTCG
ATTGGTTGGACTTTGGCCCACTTGACAATGTCGAGGATGATATAGTGGAC
GAGGTTCGCATCACCAGGCTTCGCTGTGAGCACCCTGATGACCTTGTGAG
TGCCATCGAGCGCTGCGGGTCCCAGAAAGGCCGAGAAGAGTTCAAAGCCC
ATCGTCTGGCTCTGTTGTCTGTCGCCACCAACCCATGGGTGTGTAGTGAC
GCTGAGCGTAGCTTGTTTGACGCCTTTGCTGACCAAGTGAGTCGTGTTCA
TGCGAGTTTCGCCCACGAGACACTGTACAGTGCTCGGCAGCAAGCATTGG
AATGGCTCAGAGCAAACTATCCCACTGGCGAAGATAGCATTGCGCATGGA
GGCTGGGCGTTGCTTGCTCTCCTTCAAGTGTACAATGCCCATGCTGAAGT
GGTGCTGCCTGTGCCTGTGGGTGAGCCATGGCTCTTGTGTTGGGCTGTCG
GTCACGGCGCAGTGGGAACTGTGCGTCTTGCACTTGATGGAGGCGTGTTT
TCTTCGCTTGTTGAGCGCAACGCTGCTGCAGAGAACTTGATGACACGTTC
CAGTGAGTACTGGCAGTGGATGCGAGTGGGTCAGCAGTGCACCTTGGCAC
CTGAATCAGTGCTGAAGAAGAGCTGGCTGGAACGGGGCTTCAGTCCCTTC
TCCACTCGGTTGTGTGTTGCATGGAAAGACCGTGGTGGTGATCGAAGCCA
CAATGCCCAAACTTTGTTGAAGCTTGTCACTGTTTCACCAAACTTGCATG
CTGACATTGAATTGTACTACTGTGCCAAACCGCACAAATGTGCTTACCCA
CGCTATGGAGAGTGGAAATTTGATTCTGAAACGCGTGTCTTTGAATTGTT
GAAGAAAAGTGAGCGGCTGCCACGACTCCAAGGCAACGCAGAAGAAGAAG
ATGGTGGCGGGCCCTTGGCAATTCCGACATCCCCAAGGAGGGAGGTTAAC
CATCGACGATCGCGTCAAGAGGAGGACAACGAAGTTGAGCGTCGTCGGGT
GCGAAGCAAGGTGGCTGTCTCAGTCCAAGAACTGTCTGATGTATTGCTAC
GTGTTCGAGACAGCCTCATTCGGTCCAATCAGCTGACAGAGGCTGAGAGC
GCCGAAGCTATTGCTAAGCTGCGCACTTTTGGCCATGGCGACA
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Coding sequence (CDS) from alignment at ScGOVlb_878:1197..2439+

>Gvermi13557.t1 ID=Gvermi13557.t1|Name=Gvermi13557.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1243bp|location=Sequence derived from alignment at ScGOVlb_878:1197..2439+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAACCCCTTGAGGGGCTGCCAGATGATGACCCCTTGTTCCCGTATGA
TGGTGATGGAGCTATGGCGCTTGGTGTCGATGCCTCTTCTTTGTGGGTCG
ATTGGTTGGACTTTGGCCCACTTGACAATGTCGAGGATGATATAGTGGAC
GAGGTTCGCATCACCAGGCTTCGCTGTGAGCACCCTGATGACCTTGTGAG
TGCCATCGAGCGCTGCGGGTCCCAGAAAGGCCGAGAAGAGTTCAAAGCCC
ATCGTCTGGCTCTGTTGTCTGTCGCCACCAACCCATGGGTGTGTAGTGAC
GCTGAGCGTAGCTTGTTTGACGCCTTTGCTGACCAAGTGAGTCGTGTTCA
TGCGAGTTTCGCCCACGAGACACTGTACAGTGCTCGGCAGCAAGCATTGG
AATGGCTCAGAGCAAACTATCCCACTGGCGAAGATAGCATTGCGCATGGA
GGCTGGGCGTTGCTTGCTCTCCTTCAAGTGTACAATGCCCATGCTGAAGT
GGTGCTGCCTGTGCCTGTGGGTGAGCCATGGCTCTTGTGTTGGGCTGTCG
GTCACGGCGCAGTGGGAACTGTGCGTCTTGCACTTGATGGAGGCGTGTTT
TCTTCGCTTGTTGAGCGCAACGCTGCTGCAGAGAACTTGATGACACGTTC
CAGTGAGTACTGGCAGTGGATGCGAGTGGGTCAGCAGTGCACCTTGGCAC
CTGAATCAGTGCTGAAGAAGAGCTGGCTGGAACGGGGCTTCAGTCCCTTC
TCCACTCGGTTGTGTGTTGCATGGAAAGACCGTGGTGGTGATCGAAGCCA
CAATGCCCAAACTTTGTTGAAGCTTGTCACTGTTTCACCAAACTTGCATG
CTGACATTGAATTGTACTACTGTGCCAAACCGCACAAATGTGCTTACCCA
CGCTATGGAGAGTGGAAATTTGATTCTGAAACGCGTGTCTTTGAATTGTT
GAAGAAAAGTGAGCGGCTGCCACGACTCCAAGGCAACGCAGAAGAAGAAG
ATGGTGGCGGGCCCTTGGCAATTCCGACATCCCCAAGGAGGGAGGTTAAC
CATCGACGATCGCGTCAAGAGGAGGACAACGAAGTTGAGCGTCGTCGGGT
GCGAAGCAAGGTGGCTGTCTCAGTCCAAGAACTGTCTGATGTATTGCTAC
GTGTTCGAGACAGCCTCATTCGGTCCAATCAGCTGACAGAGGCTGAGAGC
GCCGAAGCTATTGCTAAGCTGCGCACTTTTGGCCATGGCGACA
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