Gvermi13556.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13556.t1
Unique NameGvermi13556.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_878contigScGOVlb_878:325..1096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13556Gvermi13556Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_878 325..1096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13556.t1Gvermi13556.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_878 325..1096 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13556.t1.start1Gvermi13556.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_878 325..327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13556.t1.CDS1Gvermi13556.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_878 325..814 +
Gvermi13556.t1.CDS2Gvermi13556.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_878 909..1096 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13556.t1.exon1Gvermi13556.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_878 325..814 +
Gvermi13556.t1.exon2Gvermi13556.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_878 909..1096 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13556.t1.intron1Gvermi13556.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_878 815..908 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13556.t1.stop1Gvermi13556.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_878 1094..1096 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13556.t1 ID=Gvermi13556.t1|Name=Gvermi13556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=226bp
MRRHLDKVHDFDRNVWAAEEAKRHANGLAKVVKSGSIFLSSDEMKAQQTS
LAVATANSLQPLSIWEVKAPRRIHVGAAEGDVTSIDVERFSLPDWLSTLV
PQFSSFKTLQKRLKTDIVDNLDADIRFLLSKMAGVGCTTDGFQAQSGLYF
HAVTVHGVVLFNRQAVFSDTGLVTSNRRARTTGEWAEAQVKCHRNFEVVK
KVRALVEAGPEEPLEAAWQRFHGVD*
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spliced messenger RNA

>Gvermi13556.t1 ID=Gvermi13556.t1|Name=Gvermi13556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=678bp|location=Sequence derived from alignment at ScGOVlb_878:325..1096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAGGCATCTCGACAAGGTGCACGACTTCGACAGGAACGTCTGGGC
CGCTGAAGAGGCTAAGCGCCACGCCAACGGCCTCGCCAAGGTCGTCAAGA
GCGGGAGCATCTTCCTCTCTTCCGACGAGATGAAGGCTCAGCAGACCAGT
CTGGCTGTCGCCACCGCCAACTCCCTCCAGCCTCTGTCCATATGGGAAGT
CAAGGCACCCCGCCGCATCCATGTCGGTGCAGCGGAGGGTGACGTCACCT
CCATCGACGTCGAGCGGTTCAGTCTTCCCGACTGGCTGTCCACCCTGGTT
CCGCAGTTCTCCTCGTTCAAGACCCTTCAGAAGCGTCTCAAAACGGACAT
TGTCGACAACCTGGACGCTGACATCCGCTTTCTTCTTTCGAAGATGGCAG
GCGTCGGCTGCACCACTGACGGGTTCCAAGCCCAGAGCggcctctacttt
catgctgtcaccgtgcacggcgtggtcctcttcaaccggcAGGCTGTCTT
CTCCGACACAGGTCTGGTGACCAGCAATCGTCGCGCGCGGACCACTGGTG
AGTGGGCCGAGGCCCAAGTCAAGTGCCATCGCAACTTCGAAGTGGTCAAG
AAGGTTCGCGCCTTGGTGGAAGCGGGGCCTGAGGAGCCCCTAGAGGCCGC
CTGGCAGCGTTTTCATGGGGTGGACTGA
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protein sequence of Gvermi13556.t1

>Gvermi13556.t1 ID=Gvermi13556.t1|Name=Gvermi13556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=226bp
MRRHLDKVHDFDRNVWAAEEAKRHANGLAKVVKSGSIFLSSDEMKAQQTS
LAVATANSLQPLSIWEVKAPRRIHVGAAEGDVTSIDVERFSLPDWLSTLV
PQFSSFKTLQKRLKTDIVDNLDADIRFLLSKMAGVGCTTDGFQAQSGLYF
HAVTVHGVVLFNRQAVFSDTGLVTSNRRARTTGEWAEAQVKCHRNFEVVK
KVRALVEAGPEEPLEAAWQRFHGVD*
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mRNA from alignment at ScGOVlb_878:325..1096+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13556.t1 ID=Gvermi13556.t1|Name=Gvermi13556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=772bp|location=Sequence derived from alignment at ScGOVlb_878:325..1096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGAGGCATCTCGACAAGGTGCACGACTTCGACAGGAACGTCTGGGC
CGCTGAAGAGGCTAAGCGCCACGCCAACGGCCTCGCCAAGGTCGTCAAGA
GCGGGAGCATCTTCCTCTCTTCCGACGAGATGAAGGCTCAGCAGACCAGT
CTGGCTGTCGCCACCGCCAACTCCCTCCAGCCTCTGTCCATATGGGAAGT
CAAGGCACCCCGCCGCATCCATGTCGGTGCAGCGGAGGGTGACGTCACCT
CCATCGACGTCGAGCGGTTCAGTCTTCCCGACTGGCTGTCCACCCTGGTT
CCGCAGTTCTCCTCGTTCAAGACCCTTCAGAAGCGTCTCAAAACGGACAT
TGTCGACAACCTGGACGCTGACATCCGCTTTCTTCTTTCGAAGATGGCAG
GCGTCGGCTGCACCACTGACGGGTTCCAAGCCCAGAGCggcctctacttt
catgctgtcaccgtgcacggcgtggtcctcttcaaccggcgtcccatgtt
cctcagcttccttcttTGACTGCCCACGCTTTGTTCACATGGCTCTTGCC
TACATGGGGATCACCGGGTCCAATGCTCCCTCAGAGGCTGTCTTCTCCGA
CACAGGTCTGGTGACCAGCAATCGTCGCGCGCGGACCACTGGTGAGTGGG
CCGAGGCCCAAGTCAAGTGCCATCGCAACTTCGAAGTGGTCAAGAAGGTT
CGCGCCTTGGTGGAAGCGGGGCCTGAGGAGCCCCTAGAGGCCGCCTGGCA
GCGTTTTCATGGGGTGGACTGA
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Coding sequence (CDS) from alignment at ScGOVlb_878:325..1096+

>Gvermi13556.t1 ID=Gvermi13556.t1|Name=Gvermi13556.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=678bp|location=Sequence derived from alignment at ScGOVlb_878:325..1096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGGAGGCATCTCGACAAGGTGCACGACTTCGACAGGAACGTCTGGGC
CGCTGAAGAGGCTAAGCGCCACGCCAACGGCCTCGCCAAGGTCGTCAAGA
GCGGGAGCATCTTCCTCTCTTCCGACGAGATGAAGGCTCAGCAGACCAGT
CTGGCTGTCGCCACCGCCAACTCCCTCCAGCCTCTGTCCATATGGGAAGT
CAAGGCACCCCGCCGCATCCATGTCGGTGCAGCGGAGGGTGACGTCACCT
CCATCGACGTCGAGCGGTTCAGTCTTCCCGACTGGCTGTCCACCCTGGTT
CCGCAGTTCTCCTCGTTCAAGACCCTTCAGAAGCGTCTCAAAACGGACAT
TGTCGACAACCTGGACGCTGACATCCGCTTTCTTCTTTCGAAGATGGCAG
GCGTCGGCTGCACCACTGACGGGTTCCAAGCCCAGAGCggcctctacttt
catgctgtcaccgtgcacggcgtggtcctcttcaaccggcAGGCTGTCTT
CTCCGACACAGGTCTGGTGACCAGCAATCGTCGCGCGCGGACCACTGGTG
AGTGGGCCGAGGCCCAAGTCAAGTGCCATCGCAACTTCGAAGTGGTCAAG
AAGGTTCGCGCCTTGGTGGAAGCGGGGCCTGAGGAGCCCCTAGAGGCCGC
CTGGCAGCGTTTTCATGGGGTGGACTGA
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