Gvermi13527.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13527.t1
Unique NameGvermi13527.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length45
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_11747contigScGOVlb_11747:74..294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13527Gvermi13527Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_11747 74..294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13527.t1.CDS1Gvermi13527.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_11747 74..131 +
Gvermi13527.t1.CDS2Gvermi13527.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_11747 220..294 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13527.t1.exon1Gvermi13527.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_11747 74..131 +
Gvermi13527.t1.exon2Gvermi13527.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_11747 220..294 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13527.t1.intron1Gvermi13527.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_11747 132..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13527.t1Gvermi13527.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_11747 74..294 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13527.t1 ID=Gvermi13527.t1|Name=Gvermi13527.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=45bp
XVAMPFDVLCCLQLIAPHIGNAPKRRRLPPHIQTMERKGLRGKVQ
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spliced messenger RNA

>Gvermi13527.t1 ID=Gvermi13527.t1|Name=Gvermi13527.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=133bp|location=Sequence derived from alignment at ScGOVlb_11747:74..294+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TGTTGCCATGCCTTTCGATGTTCTTTGCTGTCTGCAACTTATTGCACCTC
ATATTGGGAATGCGCCCAAGCGACGGCGTCTACCACCACACATTCAAACA
ATGGAACGAAAAGGTCTTCGAGGAAAAGTACAG
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protein sequence of Gvermi13527.t1

>Gvermi13527.t1 ID=Gvermi13527.t1|Name=Gvermi13527.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=45bp
XVAMPFDVLCCLQLIAPHIGNAPKRRRLPPHIQTMERKGLRGKVQ
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mRNA from alignment at ScGOVlb_11747:74..294+

Legend: CDSpolypeptideexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13527.t1 ID=Gvermi13527.t1|Name=Gvermi13527.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=221bp|location=Sequence derived from alignment at ScGOVlb_11747:74..294+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGTTGCCATGCCTTTCGATGTTCTTTGCTGTCTGCAACTTATTGCACCTC
ATATTGGGGTAAGTATTGTCGCGTGTCGAGCACCGTGTACTAGGGCCGAT
TTGCTTGCCATTTACGTTTTCTCACCCTTGAGATCAATTGCTATAGAATG
CGCCCAAGCGACGGCGTCTACCACCACACATTCAAACAATGGAACGAAAA
GGTCTTCGAGGAAAAGTACAG
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Coding sequence (CDS) from alignment at ScGOVlb_11747:74..294+

>Gvermi13527.t1 ID=Gvermi13527.t1|Name=Gvermi13527.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=133bp|location=Sequence derived from alignment at ScGOVlb_11747:74..294+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGTTGCCATGCCTTTCGATGTTCTTTGCTGTCTGCAACTTATTGCACCTC
ATATTGGGAATGCGCCCAAGCGACGGCGTCTACCACCACACATTCAAACA
ATGGAACGAAAAGGTCTTCGAGGAAAAGTACAG
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