Gvermi13521.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13521.t1
Unique NameGvermi13521.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length256
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6358contigScGOVlb_6358:1..766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008865991.1
PFAMsPeptidase_C14
Max annot lvl2759|Eukaryota
Evalue4.61e-70
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota
Descriptioncysteine-type peptidase activity
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13521Gvermi13521Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6358 1..766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13521.t1.CDS1Gvermi13521.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6358 1..766 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13521.t1.exon1Gvermi13521.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6358 1..766 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13521.t1.start1Gvermi13521.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_6358 764..766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13521.t1Gvermi13521.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6358 1..766 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13521.t1 ID=Gvermi13521.t1|Name=Gvermi13521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=256bp
LPSLVIFCSGSTATSQHAAKASVVANDLDDGSNIPLSTCNGTKKSLFIGI
NYFGSKAELRGCINAVKNIKKFVVEHWNFPTDAKHMRTLTDDDSSNMPTK
ANMIAAFKWLVQGAKSGDSLFLHYSGHGGSQKDTDGDDGMDETLIPVDYE
KSGMIVDDDIHRMLVAGLPAGVRLTAIVDCCHSGSVFDLPYTYTPDGNLE
IVEVDNRKAALDAAISAGMSLYKGYQAGALIGGIRALSLYVAKDAVTNDA
AKEKQX
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spliced messenger RNA

>Gvermi13521.t1 ID=Gvermi13521.t1|Name=Gvermi13521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=766bp|location=Sequence derived from alignment at ScGOVlb_6358:1..766- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCCCTCGCTTGTGATATTCTGTTCTGGTTCCACAGCAACTTCCCAGCA
CGCAGCAAAAGCATCTGTGGTCGCCAACGATTTGGACGACGGCTCCAACA
TTCCACTGTCCACGTGCAATGGCACCAAGAAGTCTCTCTTCATCGGAATC
AACTATTTCGGAAGCAAAGCAGAGCTGCGCGGCTGCATCAACGCTGTCAA
GAACATCAAAAAATTTGTCGTAGAACACTGGAACTTTCCCACCGATGCCA
AGCACATGCGAACGCTGACCGACGATGACTCGTCTAACATGCCCACAAAG
GCAAACATGATTGCGGCGTTCAAATGGTTGGTGCAAGGCGCCAAGAGTGG
CGATTCTCTCTTCCTCCATTATTCCGGACACGGTGGCTCGCAGAAGGATA
CGGATGGAGACGACGGCATGGATGAGACCCTCATCCCGGTTGACTACGAA
AAAAGTGGAATGATTGTCGATGATGACATTCACAGAATGCTCGTCGCTGG
TCTGCCAGCCGGTGTGCGTCTAACAGCCATTGTGGACTGCTGTCACTCTG
GCAGCGTCTTTGACTTGCCCTACACGTACACGCCGGACGGTAACTTGGAA
ATTGTCGAAGTAGACAATCGCAAGGCGGCGCTGGATGCGGCAATATCCGC
TGGCATGTCGCTATACAAGGGCTACCAGGCGGGTGCACTCATTGGTGGCA
TTCGCGCACTGTCATTGTACGTGGCCAAGGACGCTGTGACGAACGACGCG
GCCAAGGAAAAGCAAA
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protein sequence of Gvermi13521.t1

>Gvermi13521.t1 ID=Gvermi13521.t1|Name=Gvermi13521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=256bp
LPSLVIFCSGSTATSQHAAKASVVANDLDDGSNIPLSTCNGTKKSLFIGI
NYFGSKAELRGCINAVKNIKKFVVEHWNFPTDAKHMRTLTDDDSSNMPTK
ANMIAAFKWLVQGAKSGDSLFLHYSGHGGSQKDTDGDDGMDETLIPVDYE
KSGMIVDDDIHRMLVAGLPAGVRLTAIVDCCHSGSVFDLPYTYTPDGNLE
IVEVDNRKAALDAAISAGMSLYKGYQAGALIGGIRALSLYVAKDAVTNDA
AKEKQX
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mRNA from alignment at ScGOVlb_6358:1..766-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13521.t1 ID=Gvermi13521.t1|Name=Gvermi13521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=766bp|location=Sequence derived from alignment at ScGOVlb_6358:1..766- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCCCTCGCTTGTGATATTCTGTTCTGGTTCCACAGCAACTTCCCAGCA
CGCAGCAAAAGCATCTGTGGTCGCCAACGATTTGGACGACGGCTCCAACA
TTCCACTGTCCACGTGCAATGGCACCAAGAAGTCTCTCTTCATCGGAATC
AACTATTTCGGAAGCAAAGCAGAGCTGCGCGGCTGCATCAACGCTGTCAA
GAACATCAAAAAATTTGTCGTAGAACACTGGAACTTTCCCACCGATGCCA
AGCACATGCGAACGCTGACCGACGATGACTCGTCTAACATGCCCACAAAG
GCAAACATGATTGCGGCGTTCAAATGGTTGGTGCAAGGCGCCAAGAGTGG
CGATTCTCTCTTCCTCCATTATTCCGGACACGGTGGCTCGCAGAAGGATA
CGGATGGAGACGACGGCATGGATGAGACCCTCATCCCGGTTGACTACGAA
AAAAGTGGAATGATTGTCGATGATGACATTCACAGAATGCTCGTCGCTGG
TCTGCCAGCCGGTGTGCGTCTAACAGCCATTGTGGACTGCTGTCACTCTG
GCAGCGTCTTTGACTTGCCCTACACGTACACGCCGGACGGTAACTTGGAA
ATTGTCGAAGTAGACAATCGCAAGGCGGCGCTGGATGCGGCAATATCCGC
TGGCATGTCGCTATACAAGGGCTACCAGGCGGGTGCACTCATTGGTGGCA
TTCGCGCACTGTCATTGTACGTGGCCAAGGACGCTGTGACGAACGACGCG
GCCAAGGAAAAGCAAA
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Coding sequence (CDS) from alignment at ScGOVlb_6358:1..766-

>Gvermi13521.t1 ID=Gvermi13521.t1|Name=Gvermi13521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=766bp|location=Sequence derived from alignment at ScGOVlb_6358:1..766- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCCCTCGCTTGTGATATTCTGTTCTGGTTCCACAGCAACTTCCCAGCA
CGCAGCAAAAGCATCTGTGGTCGCCAACGATTTGGACGACGGCTCCAACA
TTCCACTGTCCACGTGCAATGGCACCAAGAAGTCTCTCTTCATCGGAATC
AACTATTTCGGAAGCAAAGCAGAGCTGCGCGGCTGCATCAACGCTGTCAA
GAACATCAAAAAATTTGTCGTAGAACACTGGAACTTTCCCACCGATGCCA
AGCACATGCGAACGCTGACCGACGATGACTCGTCTAACATGCCCACAAAG
GCAAACATGATTGCGGCGTTCAAATGGTTGGTGCAAGGCGCCAAGAGTGG
CGATTCTCTCTTCCTCCATTATTCCGGACACGGTGGCTCGCAGAAGGATA
CGGATGGAGACGACGGCATGGATGAGACCCTCATCCCGGTTGACTACGAA
AAAAGTGGAATGATTGTCGATGATGACATTCACAGAATGCTCGTCGCTGG
TCTGCCAGCCGGTGTGCGTCTAACAGCCATTGTGGACTGCTGTCACTCTG
GCAGCGTCTTTGACTTGCCCTACACGTACACGCCGGACGGTAACTTGGAA
ATTGTCGAAGTAGACAATCGCAAGGCGGCGCTGGATGCGGCAATATCCGC
TGGCATGTCGCTATACAAGGGCTACCAGGCGGGTGCACTCATTGGTGGCA
TTCGCGCACTGTCATTGTACGTGGCCAAGGACGCTGTGACGAACGACGCG
GCCAAGGAAAAGCAAA
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