Gvermi13518.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13518.t1
Unique NameGvermi13518.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length363
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_213contigScGOVlb_213:256..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13518Gvermi13518Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_213 256..1344 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13518.t1.start1Gvermi13518.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_213 256..258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13518.t1.CDS1Gvermi13518.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_213 256..1344 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13518.t1.exon1Gvermi13518.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_213 256..1344 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13518.t1.stop1Gvermi13518.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_213 1342..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13518.t1Gvermi13518.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_213 256..1344 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13518.t1 ID=Gvermi13518.t1|Name=Gvermi13518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=363bp
MNASTEASASAAGAPPPRTIAVVPDSPTKTLFISMDIEKSASVKKHIPFQ
KGSGNLGLIPMHIRAASSNPRACIVEMKRFRRMGRARQDAERDKWISKVW
FEQKHHKDIFDGLVKLQEQLRNEQAVWSEVAPPLATMLENATAAKRKRRR
AKENAAAAAAAAAAAAAAAVTDGEKEQRAWLPNFRQQQQQRQQQQQRDQS
STPTPPSGAPTVTPEEAAIEPEQCLVGYTGLASSPEKRQRVADAARKKAS
STASAVTAHKALHAGTALHHQSDAVSQKYVDQAHEAVAKACDTIYYPGRA
PGEAERCLVLLEYSEIHASNSHGGRPSLVDASELTRAKPLVTITGPNDKE
QLIKTLEGVSNR*
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spliced messenger RNA

>Gvermi13518.t1 ID=Gvermi13518.t1|Name=Gvermi13518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at ScGOVlb_213:256..1344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCGTCCACGGAAGCCTCCGCCTCTGCCGCTGGTGCTCCACCGCC
ACGAACCATTGCTGTAGTGCCTGATTCTCCCACCAAAACACTGTTCATTA
GCATGGATATTGAAAAGTCTGCCAGTGTGAAGAAACATATCCCTTTTCAA
AAGGGTTCTGGCAATTTGGGCCTAATTCCCATGCACATTCGTGCAGCAAG
CTCAAACCCACGCGCTTGCATTGTTGAAATGAAAAGATTCCGTCGCATGG
GCCGAGCGCGACAAGATGCAGAGCGTGATAAATGGATTTCGAAAGTATGG
TTTGAACAGAAGCACCACAAGGATATCTTTGATGGTCTGGTCAAGCTGCA
AGAGCAGCTCCGCAACGAACAGGCAGTCTGGTCGGAGGTTGCGCCACCTC
TTGCAACCATGCTAGAAaacgccacagcagcaaaacgtaaacgtcggcgt
gcaaaagaaaacgccgccgctgctgctgccgccgccgctgccgcagccgc
cgcagctgtgactgatggggaGAAAGAGCAGCGGGCGTGGCTCCCTAATT
TCCGAcagcagcagcagcagcgccagcagcagcagcagcGCGACCAGTCT
AGTACTCCAACGCCGCCCTCTGGCGCGCCTACGGTGACGCCTGAAGAGGC
GGCCATTGAGCCAGAGCAATGCCTGGTAGGCTACACTGGTCTTGCGTCGT
CACCGGAGAAACGGCAACGGGTTGCCGACGCGGCACGCAAGAAAGCCAGC
AGTACGGCCTCCGCCGTTACTGCTCACAAAGCACTGCACGCCGGGACAGC
ATTGCACCACCAGAGTGATGCTGTATCACAAAAATACGTGGACCAAGCGC
ACGAGGCAGTCGCAAAAGCCTGCGATACGATTTACTATCCGGGCCGAGCT
CCTGGAGAAGCAGAGCGCTGTCTCGTTCTCTTGGAATACAGCGAAATTCA
TGCCAGCAATTCCCACGGCGGTCGGCCCAGTTTGGTGGATGCCAGCGAAC
TCACGCGTGCAAAGCCTCTTGTGACGATCACCGGTCCGAACGACAAGGAA
CAGCTGATCAAGACGTTGGAGGGCGTATCAAATCGTTGA
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protein sequence of Gvermi13518.t1

>Gvermi13518.t1 ID=Gvermi13518.t1|Name=Gvermi13518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=363bp
MNASTEASASAAGAPPPRTIAVVPDSPTKTLFISMDIEKSASVKKHIPFQ
KGSGNLGLIPMHIRAASSNPRACIVEMKRFRRMGRARQDAERDKWISKVW
FEQKHHKDIFDGLVKLQEQLRNEQAVWSEVAPPLATMLENATAAKRKRRR
AKENAAAAAAAAAAAAAAAVTDGEKEQRAWLPNFRQQQQQRQQQQQRDQS
STPTPPSGAPTVTPEEAAIEPEQCLVGYTGLASSPEKRQRVADAARKKAS
STASAVTAHKALHAGTALHHQSDAVSQKYVDQAHEAVAKACDTIYYPGRA
PGEAERCLVLLEYSEIHASNSHGGRPSLVDASELTRAKPLVTITGPNDKE
QLIKTLEGVSNR*
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mRNA from alignment at ScGOVlb_213:256..1344+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13518.t1 ID=Gvermi13518.t1|Name=Gvermi13518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1089bp|location=Sequence derived from alignment at ScGOVlb_213:256..1344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGCGTCCACGGAAGCCTCCGCCTCTGCCGCTGGTGCTCCACCGCC
ACGAACCATTGCTGTAGTGCCTGATTCTCCCACCAAAACACTGTTCATTA
GCATGGATATTGAAAAGTCTGCCAGTGTGAAGAAACATATCCCTTTTCAA
AAGGGTTCTGGCAATTTGGGCCTAATTCCCATGCACATTCGTGCAGCAAG
CTCAAACCCACGCGCTTGCATTGTTGAAATGAAAAGATTCCGTCGCATGG
GCCGAGCGCGACAAGATGCAGAGCGTGATAAATGGATTTCGAAAGTATGG
TTTGAACAGAAGCACCACAAGGATATCTTTGATGGTCTGGTCAAGCTGCA
AGAGCAGCTCCGCAACGAACAGGCAGTCTGGTCGGAGGTTGCGCCACCTC
TTGCAACCATGCTAGAAaacgccacagcagcaaaacgtaaacgtcggcgt
gcaaaagaaaacgccgccgctgctgctgccgccgccgctgccgcagccgc
cgcagctgtgactgatggggaGAAAGAGCAGCGGGCGTGGCTCCCTAATT
TCCGAcagcagcagcagcagcgccagcagcagcagcagcGCGACCAGTCT
AGTACTCCAACGCCGCCCTCTGGCGCGCCTACGGTGACGCCTGAAGAGGC
GGCCATTGAGCCAGAGCAATGCCTGGTAGGCTACACTGGTCTTGCGTCGT
CACCGGAGAAACGGCAACGGGTTGCCGACGCGGCACGCAAGAAAGCCAGC
AGTACGGCCTCCGCCGTTACTGCTCACAAAGCACTGCACGCCGGGACAGC
ATTGCACCACCAGAGTGATGCTGTATCACAAAAATACGTGGACCAAGCGC
ACGAGGCAGTCGCAAAAGCCTGCGATACGATTTACTATCCGGGCCGAGCT
CCTGGAGAAGCAGAGCGCTGTCTCGTTCTCTTGGAATACAGCGAAATTCA
TGCCAGCAATTCCCACGGCGGTCGGCCCAGTTTGGTGGATGCCAGCGAAC
TCACGCGTGCAAAGCCTCTTGTGACGATCACCGGTCCGAACGACAAGGAA
CAGCTGATCAAGACGTTGGAGGGCGTATCAAATCGTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_213:256..1344+

>Gvermi13518.t1 ID=Gvermi13518.t1|Name=Gvermi13518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1089bp|location=Sequence derived from alignment at ScGOVlb_213:256..1344+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGCGTCCACGGAAGCCTCCGCCTCTGCCGCTGGTGCTCCACCGCC
ACGAACCATTGCTGTAGTGCCTGATTCTCCCACCAAAACACTGTTCATTA
GCATGGATATTGAAAAGTCTGCCAGTGTGAAGAAACATATCCCTTTTCAA
AAGGGTTCTGGCAATTTGGGCCTAATTCCCATGCACATTCGTGCAGCAAG
CTCAAACCCACGCGCTTGCATTGTTGAAATGAAAAGATTCCGTCGCATGG
GCCGAGCGCGACAAGATGCAGAGCGTGATAAATGGATTTCGAAAGTATGG
TTTGAACAGAAGCACCACAAGGATATCTTTGATGGTCTGGTCAAGCTGCA
AGAGCAGCTCCGCAACGAACAGGCAGTCTGGTCGGAGGTTGCGCCACCTC
TTGCAACCATGCTAGAAaacgccacagcagcaaaacgtaaacgtcggcgt
gcaaaagaaaacgccgccgctgctgctgccgccgccgctgccgcagccgc
cgcagctgtgactgatggggaGAAAGAGCAGCGGGCGTGGCTCCCTAATT
TCCGAcagcagcagcagcagcgccagcagcagcagcagcGCGACCAGTCT
AGTACTCCAACGCCGCCCTCTGGCGCGCCTACGGTGACGCCTGAAGAGGC
GGCCATTGAGCCAGAGCAATGCCTGGTAGGCTACACTGGTCTTGCGTCGT
CACCGGAGAAACGGCAACGGGTTGCCGACGCGGCACGCAAGAAAGCCAGC
AGTACGGCCTCCGCCGTTACTGCTCACAAAGCACTGCACGCCGGGACAGC
ATTGCACCACCAGAGTGATGCTGTATCACAAAAATACGTGGACCAAGCGC
ACGAGGCAGTCGCAAAAGCCTGCGATACGATTTACTATCCGGGCCGAGCT
CCTGGAGAAGCAGAGCGCTGTCTCGTTCTCTTGGAATACAGCGAAATTCA
TGCCAGCAATTCCCACGGCGGTCGGCCCAGTTTGGTGGATGCCAGCGAAC
TCACGCGTGCAAAGCCTCTTGTGACGATCACCGGTCCGAACGACAAGGAA
CAGCTGATCAAGACGTTGGAGGGCGTATCAAATCGTTGA
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