Gvermi13512.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13512.t1
Unique NameGvermi13512.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length125
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2424contigScGOVlb_2424:470..900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr49226
PFAMsDUF3611
Max annot lvl2836|Bacillariophyta
Evalue3.61e-29
EggNOG OGs28KUA@1|root,2QTAI@2759|Eukaryota,2XGTY@2836|Bacillariophyta
DescriptionProtein of unknown function (DUF3611)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13512Gvermi13512Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2424 470..900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13512.t1Gvermi13512.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2424 470..900 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13512.t1.stop1Gvermi13512.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2424 470..472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13512.t1.CDS1Gvermi13512.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2424 470..818 -
Gvermi13512.t1.CDS2Gvermi13512.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2424 875..900 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13512.t1.exon1Gvermi13512.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2424 470..818 -
Gvermi13512.t1.exon2Gvermi13512.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2424 875..900 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13512.t1.intron1Gvermi13512.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2424 819..874 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13512.t1.start1Gvermi13512.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2424 898..900 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13512.t1 ID=Gvermi13512.t1|Name=Gvermi13512.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=125bp
MEPGSRGAFSSRIAAATMLRRAIAVGVTVNLAGLLCNLLAAEEIIGSLAI
KVLTNRGAVFNGMMDSQLSSSSSVLQPLDILVVQANTNSLLSQFCSLVSL
LYLTQRVAKLDPPSTVDNPRQQQQ*
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spliced messenger RNA

>Gvermi13512.t1 ID=Gvermi13512.t1|Name=Gvermi13512.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=375bp|location=Sequence derived from alignment at ScGOVlb_2424:470..900- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCCGGCTCTCGAGGCGCCTTCAGCAGCCGCATTGCCGCCGCCAC
CATGCTGCGCCGGGCCATTGCTGTCGGCGTTACGGTGAATTTGGCTGGAC
TGCTGTGCAACTTGCTGGCGGCCGAAGAAATTATTGGCAGCTTGGCAATC
AAGGTGCTGACCAATCGCGGCGCCGTGTTTAACGGAATGATGGATTCGCA
GTTGTCGTCGTCGTCGTCCGTGCTGCAACCGCTGGATATCCTGGTCGTGC
AAGCCAACACCAATTCGCTCCTGTCCCAATTTTGCAGCCTCGTCTCGCTG
CTGTACCTGACGCAGCGCGTGGCCAAGCTGGATCCGCCCAGCACTGTGGA
CAATCCGCGGCAGCAGCAGCAGTAG
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protein sequence of Gvermi13512.t1

>Gvermi13512.t1 ID=Gvermi13512.t1|Name=Gvermi13512.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=125bp
MEPGSRGAFSSRIAAATMLRRAIAVGVTVNLAGLLCNLLAAEEIIGSLAI
KVLTNRGAVFNGMMDSQLSSSSSVLQPLDILVVQANTNSLLSQFCSLVSL
LYLTQRVAKLDPPSTVDNPRQQQQ*
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mRNA from alignment at ScGOVlb_2424:470..900-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13512.t1 ID=Gvermi13512.t1|Name=Gvermi13512.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=431bp|location=Sequence derived from alignment at ScGOVlb_2424:470..900- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACCCGGCTCTCGAGGCGCCTTGTGCGGCGGCGCCTTGCGGCAGCG
GCGTCGTCGTCCGACAATAACAGCGGCGGCAGCAGCAGCCGCATTGCCGC
CGCCACCATGCTGCGCCGGGCCATTGCTGTCGGCGTTACGGTGAATTTGG
CTGGACTGCTGTGCAACTTGCTGGCGGCCGAAGAAATTATTGGCAGCTTG
GCAATCAAGGTGCTGACCAATCGCGGCGCCGTGTTTAACGGAATGATGGA
TTCGCAGTTGTCGTCGTCGTCGTCCGTGCTGCAACCGCTGGATATCCTGG
TCGTGCAAGCCAACACCAATTCGCTCCTGTCCCAATTTTGCAGCCTCGTC
TCGCTGCTGTACCTGACGCAGCGCGTGGCCAAGCTGGATCCGCCCAGCAC
TGTGGACAATCCGCGGCAGCAGCAGCAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2424:470..900-

>Gvermi13512.t1 ID=Gvermi13512.t1|Name=Gvermi13512.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=375bp|location=Sequence derived from alignment at ScGOVlb_2424:470..900- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACCCGGCTCTCGAGGCGCCTTCAGCAGCCGCATTGCCGCCGCCAC
CATGCTGCGCCGGGCCATTGCTGTCGGCGTTACGGTGAATTTGGCTGGAC
TGCTGTGCAACTTGCTGGCGGCCGAAGAAATTATTGGCAGCTTGGCAATC
AAGGTGCTGACCAATCGCGGCGCCGTGTTTAACGGAATGATGGATTCGCA
GTTGTCGTCGTCGTCGTCCGTGCTGCAACCGCTGGATATCCTGGTCGTGC
AAGCCAACACCAATTCGCTCCTGTCCCAATTTTGCAGCCTCGTCTCGCTG
CTGTACCTGACGCAGCGCGTGGCCAAGCTGGATCCGCCCAGCACTGTGGA
CAATCCGCGGCAGCAGCAGCAGTAG
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