Gvermi1349.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1349.t1
Unique NameGvermi1349.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length489
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_635contigScGOVlb_635:184..2864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1349Gvermi1349Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_635 184..2864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1349.t1Gvermi1349.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_635 184..2864 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1349.t1.start1Gvermi1349.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_635 184..186 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1349.t1.CDS1Gvermi1349.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_635 184..315 +
Gvermi1349.t1.CDS2Gvermi1349.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_635 1532..2864 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1349.t1.exon1Gvermi1349.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_635 184..315 +
Gvermi1349.t1.exon2Gvermi1349.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_635 1532..2864 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1349.t1.intron1Gvermi1349.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_635 316..1531 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1349.t1 ID=Gvermi1349.t1|Name=Gvermi1349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=489bp
MLLVPVALAAVVASKGLVDEVFAVIVHVVAVLLGQVAVQPSGCLKSTGAC
TACAASASARGEKRARAISDKAKNDASSLVDKDLAQCGATDPLAPVAVWA
PPAKELPVALGHLHVVGSRDAHEDADDGPRPMELDDTDGTAVRVSANIDA
SSLFYNDIARAGAAVLAGETASISVMRNVLDLQNIVTRVVGAGVTLNLFA
AACVAGETATQKVRHAGATESQRHLRAMERSAALYREGKSRKRRKQLVAA
VARHLSSLPSWAKQAIRGVFVECLAATASESTVNVLRVSDEDPYFLSDMG
HLHLVFARDWDAVWSSLWCLDDTQIVVVMDATPRQLSLVDARLAKAEAMV
ALFPALGALVPTGCAAWWSRRAACVRDTRLERVIWLASSIACVFDGVCDF
VPPLFVRNQKGETKKLFYSTWIKWWARFFAQMVIVEDEVVFVPTLAHFFS
WLGQQRNVGLIQGLLEIQDHVRQTLLDAGFKVWASASLX
back to top

spliced messenger RNA

>Gvermi1349.t1 ID=Gvermi1349.t1|Name=Gvermi1349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1465bp|location=Sequence derived from alignment at ScGOVlb_635:184..2864+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCTTGTTCCTGTAGCCCTTGCCGCAGTCGTCGCATCGAAAGGGCT
TGTGGACGAGGTATTCGCCGTCATCGTCCACGTCGTCGCCGTGCTTCTGG
GCCAAGTGGCTGTTCAGCCCAGCGGTTGTCTCAAGTCCACGGGAGCATGC
ACGGCCTGCGCTGCAAGCGCGTCAGCACGTGGAGAGAAGCGCGCCCGCGC
CATCTCAGACAAGGCCAAGAACGACGCCTCCTCTCTGGTGGACAAGGACC
TCGCGCAGTGCGGCGCAACAGATCCGCTTGCTCCAGTGGCGGTATGGGCA
CCACCGGCGAAAGAACTGCCGGTTGCGCTTGGCCATCTTCATGTCGTGGG
GTCCCGAGACGCGCACGAAGACGCTGACGATGGCCCCCGTCCCATGGAGC
TGGATGACACCGACGGTACGGCGGTCCGCGTCAGTGCAAATATCGACGCC
TCGTCCCTCTTCTACAATGACATTGCGCGCGCGGGCGCTGCTGTGCTGGC
TGGAGAGACTGCGTCCATCAGCGTCATGCGCAACGTTTTGGACTTGCAGA
ACATCGTCACTCGCGTCGTCGGCGCTGGCGTCACGCTCAACCTTTTTGCT
GCTGCCTGCGTGGCGGGCGAGACGGCAACACAGAAGGTTCGGCATGCCGG
TGCCACTGAGTCGCAGCGCCACCTGCGCGCCATGGAGCGTAGCGCGGCAC
TGTACCGCGAAGGGAAGTCCCGGAAGCGTCGCAAGCAACTGGTAGCGGCT
GTCGCCCGCCATCTCTCATCGCTTCCGTCCTGGGCCAAGCAAGCCATCCG
GGGCGTCTTTGTTGAGTGTCTGGCGGCAACGGCATCAGAATCGACCGTCA
ATGTGCTGCGTGTCTCCGACGAGGATCCCTACTTTCTCTCTGACATGGGG
CATCTGCACTTGGTCTTTGCGCGGGACTGGGACGCCGTCTGGTCGTCACT
TTGGTGCCTCGACGACACGCAAATCGTCGTCGTGATGGACGCAACGCCCC
GCCAGCTTTCGCTCGTTGACGCTCGCCTGGCCAAGGCCGAAGCAATGGTT
GCCCTTTTTCCCGCTCTGGGGGCATTGGTGCCAACTGGTTGTGCAGCGTG
GTGGAGCCGCCGCGCGGCATGTGTCCGTGACACGCGACTGGAGCGTGTAA
TTTGGTTGGCGTCCAGCATTGCATGTGTGTTCGATGGCGTGTGCGATTTT
GTTCCGCCACTTTTTGTGCGCAACCAGAAGGGGGAGACCAAGAAGCTCTT
CTACTCCACGTGGATCAAGTGGTGGGCTCGGTTCTTTGCTCAGATGGTCA
TTGTGGAGGACGAAGTGGTGTTTGTCCCCACGTTGGCGCACTTCTTCTCT
TGGCTTGGGCAGCAACGAAATGTCGGCCTCATTCAAGGCCTTTTGGAGAT
CCAGGATCATGTGCGCCAGACGCTTCTCGACGCAGGCTTCAAAGTCTGGG
CCAGTGCCTCGTTGT
back to top

protein sequence of Gvermi1349.t1

>Gvermi1349.t1 ID=Gvermi1349.t1|Name=Gvermi1349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=489bp
MLLVPVALAAVVASKGLVDEVFAVIVHVVAVLLGQVAVQPSGCLKSTGAC
TACAASASARGEKRARAISDKAKNDASSLVDKDLAQCGATDPLAPVAVWA
PPAKELPVALGHLHVVGSRDAHEDADDGPRPMELDDTDGTAVRVSANIDA
SSLFYNDIARAGAAVLAGETASISVMRNVLDLQNIVTRVVGAGVTLNLFA
AACVAGETATQKVRHAGATESQRHLRAMERSAALYREGKSRKRRKQLVAA
VARHLSSLPSWAKQAIRGVFVECLAATASESTVNVLRVSDEDPYFLSDMG
HLHLVFARDWDAVWSSLWCLDDTQIVVVMDATPRQLSLVDARLAKAEAMV
ALFPALGALVPTGCAAWWSRRAACVRDTRLERVIWLASSIACVFDGVCDF
VPPLFVRNQKGETKKLFYSTWIKWWARFFAQMVIVEDEVVFVPTLAHFFS
WLGQQRNVGLIQGLLEIQDHVRQTLLDAGFKVWASASLX
back to top

mRNA from alignment at ScGOVlb_635:184..2864+

Legend: polypeptidestart_codonCDSexonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1349.t1 ID=Gvermi1349.t1|Name=Gvermi1349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2681bp|location=Sequence derived from alignment at ScGOVlb_635:184..2864+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCTTGTTCCTGTAGCCCTTGCCGCAGTCGTCGCATCGAAAGGGCT
TGTGGACGAGGTATTCGCCGTCATCGTCCACGTCGTCGCCGTGCTTCTGG
GCCAAGTGGCTGTTCAGCCCAGCGGTTGTCTCGTATGTCAGCGGGGCACA
CGACGGGAGTTCCGCTACACACACCACCTGTACACTTGTCGTTGATGGTG
CACTTGAATGGGTCGACACGCGACGTGCCGTCGGCAATGACAGGGTTGTC
GCACACGCCGTTGGTGCACGTACCGGCCTCATGGCACTGGCTCAGCGCCT
TGCAGACCACGGGAGTGCCAGCGCAGTTGCCAGCGGTGCAAATGTCGTTG
GTGGTGCAAGAGTCTCCATCATTGCAGCCGGTGCCGTTCGTCTTGGTGGG
CTCAGAGCAAGAGCCGTCCAACGCCTGGCACTCGCCGGGCAGGTGGCACG
GGCTAATGGCAGGGCATGACTTGGGAGTACCCACACAGACACCGGACACG
CAAGATTGTTGTCGTCACACGAAAGCCCATCCACGGCATTGGGGTCGGAG
CACTGACCCGTTGCGGGCTGGCAGGTGCCGGCGGCGCGGCACTGGCCCTG
AGATGGGCACGTGACGGGGGTTCCCACACACACGCCGCCCTGGCACGAGT
CGCCCGTGGTGCACAGATCCCCGTCGTCGCACTTGGAGCTGTCCGCCACG
AAGGGATCCGTCGGTGCAGCCCGTGGCGGCCTGGAAGGCGCAAAAAAAGG
GCCAGTCGAGTGAAAAAACGCGGGTTGGTGATCCCAGTCTGAGGCCAATG
ACGCGACCCCGGCCCATCAGTCTCTGATGACTGGGATTGAGCGGCCATGG
CTGATCTAAATTATCGTACCTTTCGTGAAGGGCCAGCGAGGTGAGTGGAG
ACAAATGGTGGACGGGCGGGAGGAGTGTTTTCCCCTCTAGAGGCGTCCTC
TCACACGTCCAAAAAAGATGGGCGTGACCACTGACACTGTGCGGAAGCGC
CTCCAGCGCCACAAGGTGGACGAGGATCGCAGCGCGGAGGGCTTTCATCG
AGGCCTCTCGCAGATTGCTCGCGTCCGCGAGGAGCACGGAGAGCCCGGCG
GCTCCTTGCTCCGGAGGGCCATCAGCGAACCCCGCAAAgccgccgccgcg
gccgccgcacccgctgctgccgctgcacccgcagctccacctgcgccact
tcaagtgcctctgccagtgccacccaccggcgctgcGCAGCCTCGCTCAT
CACGCCCGTCCCCCTGCCCCGGATGCGGAGAGTACGTCCGGGGCAAGGCT
ACGGAGTGTAGCACCTGCAAGGGCCGTTGCCATGCGGGGTGCGTCAAGAA
GTCCACGGGAGCATGCACGGCCTGCGCTGCAAGCGCGTCAGCACGTGGAG
AGAAGCGCGCCCGCGCCATCTCAGACAAGGCCAAGAACGACGCCTCCTCT
CTGGTGGACAAGGACCTCGCGCAGTGCGGCGCAACAGATCCGCTTGCTCC
AGTGGCGGTATGGGCACCACCGGCGAAAGAACTGCCGGTTGCGCTTGGCC
ATCTTCATGTCGTGGGGTCCCGAGACGCGCACGAAGACGCTGACGATGGC
CCCCGTCCCATGGAGCTGGATGACACCGACGGTACGGCGGTCCGCGTCAG
TGCAAATATCGACGCCTCGTCCCTCTTCTACAATGACATTGCGCGCGCGG
GCGCTGCTGTGCTGGCTGGAGAGACTGCGTCCATCAGCGTCATGCGCAAC
GTTTTGGACTTGCAGAACATCGTCACTCGCGTCGTCGGCGCTGGCGTCAC
GCTCAACCTTTTTGCTGCTGCCTGCGTGGCGGGCGAGACGGCAACACAGA
AGGTTCGGCATGCCGGTGCCACTGAGTCGCAGCGCCACCTGCGCGCCATG
GAGCGTAGCGCGGCACTGTACCGCGAAGGGAAGTCCCGGAAGCGTCGCAA
GCAACTGGTAGCGGCTGTCGCCCGCCATCTCTCATCGCTTCCGTCCTGGG
CCAAGCAAGCCATCCGGGGCGTCTTTGTTGAGTGTCTGGCGGCAACGGCA
TCAGAATCGACCGTCAATGTGCTGCGTGTCTCCGACGAGGATCCCTACTT
TCTCTCTGACATGGGGCATCTGCACTTGGTCTTTGCGCGGGACTGGGACG
CCGTCTGGTCGTCACTTTGGTGCCTCGACGACACGCAAATCGTCGTCGTG
ATGGACGCAACGCCCCGCCAGCTTTCGCTCGTTGACGCTCGCCTGGCCAA
GGCCGAAGCAATGGTTGCCCTTTTTCCCGCTCTGGGGGCATTGGTGCCAA
CTGGTTGTGCAGCGTGGTGGAGCCGCCGCGCGGCATGTGTCCGTGACACG
CGACTGGAGCGTGTAATTTGGTTGGCGTCCAGCATTGCATGTGTGTTCGA
TGGCGTGTGCGATTTTGTTCCGCCACTTTTTGTGCGCAACCAGAAGGGGG
AGACCAAGAAGCTCTTCTACTCCACGTGGATCAAGTGGTGGGCTCGGTTC
TTTGCTCAGATGGTCATTGTGGAGGACGAAGTGGTGTTTGTCCCCACGTT
GGCGCACTTCTTCTCTTGGCTTGGGCAGCAACGAAATGTCGGCCTCATTC
AAGGCCTTTTGGAGATCCAGGATCATGTGCGCCAGACGCTTCTCGACGCA
GGCTTCAAAGTCTGGGCCAGTGCCTCGTTGT
back to top

Coding sequence (CDS) from alignment at ScGOVlb_635:184..2864+

>Gvermi1349.t1 ID=Gvermi1349.t1|Name=Gvermi1349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1465bp|location=Sequence derived from alignment at ScGOVlb_635:184..2864+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCTTGTTCCTGTAGCCCTTGCCGCAGTCGTCGCATCGAAAGGGCT
TGTGGACGAGGTATTCGCCGTCATCGTCCACGTCGTCGCCGTGCTTCTGG
GCCAAGTGGCTGTTCAGCCCAGCGGTTGTCTCAAGTCCACGGGAGCATGC
ACGGCCTGCGCTGCAAGCGCGTCAGCACGTGGAGAGAAGCGCGCCCGCGC
CATCTCAGACAAGGCCAAGAACGACGCCTCCTCTCTGGTGGACAAGGACC
TCGCGCAGTGCGGCGCAACAGATCCGCTTGCTCCAGTGGCGGTATGGGCA
CCACCGGCGAAAGAACTGCCGGTTGCGCTTGGCCATCTTCATGTCGTGGG
GTCCCGAGACGCGCACGAAGACGCTGACGATGGCCCCCGTCCCATGGAGC
TGGATGACACCGACGGTACGGCGGTCCGCGTCAGTGCAAATATCGACGCC
TCGTCCCTCTTCTACAATGACATTGCGCGCGCGGGCGCTGCTGTGCTGGC
TGGAGAGACTGCGTCCATCAGCGTCATGCGCAACGTTTTGGACTTGCAGA
ACATCGTCACTCGCGTCGTCGGCGCTGGCGTCACGCTCAACCTTTTTGCT
GCTGCCTGCGTGGCGGGCGAGACGGCAACACAGAAGGTTCGGCATGCCGG
TGCCACTGAGTCGCAGCGCCACCTGCGCGCCATGGAGCGTAGCGCGGCAC
TGTACCGCGAAGGGAAGTCCCGGAAGCGTCGCAAGCAACTGGTAGCGGCT
GTCGCCCGCCATCTCTCATCGCTTCCGTCCTGGGCCAAGCAAGCCATCCG
GGGCGTCTTTGTTGAGTGTCTGGCGGCAACGGCATCAGAATCGACCGTCA
ATGTGCTGCGTGTCTCCGACGAGGATCCCTACTTTCTCTCTGACATGGGG
CATCTGCACTTGGTCTTTGCGCGGGACTGGGACGCCGTCTGGTCGTCACT
TTGGTGCCTCGACGACACGCAAATCGTCGTCGTGATGGACGCAACGCCCC
GCCAGCTTTCGCTCGTTGACGCTCGCCTGGCCAAGGCCGAAGCAATGGTT
GCCCTTTTTCCCGCTCTGGGGGCATTGGTGCCAACTGGTTGTGCAGCGTG
GTGGAGCCGCCGCGCGGCATGTGTCCGTGACACGCGACTGGAGCGTGTAA
TTTGGTTGGCGTCCAGCATTGCATGTGTGTTCGATGGCGTGTGCGATTTT
GTTCCGCCACTTTTTGTGCGCAACCAGAAGGGGGAGACCAAGAAGCTCTT
CTACTCCACGTGGATCAAGTGGTGGGCTCGGTTCTTTGCTCAGATGGTCA
TTGTGGAGGACGAAGTGGTGTTTGTCCCCACGTTGGCGCACTTCTTCTCT
TGGCTTGGGCAGCAACGAAATGTCGGCCTCATTCAAGGCCTTTTGGAGAT
CCAGGATCATGTGCGCCAGACGCTTCTCGACGCAGGCTTCAAAGTCTGGG
CCAGTGCCTCGTTGT
back to top