Gvermi1347.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1347.t1
Unique NameGvermi1347.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2515contigScGOVlb_2515:2..1232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1347Gvermi1347Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2515 2..1232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1347.t1Gvermi1347.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2515 2..1232 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1347.t1.CDS1Gvermi1347.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2515 2..138 +
Gvermi1347.t1.CDS2Gvermi1347.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2515 230..547 +
Gvermi1347.t1.CDS3Gvermi1347.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2515 628..1232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1347.t1.exon1Gvermi1347.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2515 2..138 +
Gvermi1347.t1.exon2Gvermi1347.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2515 230..547 +
Gvermi1347.t1.exon3Gvermi1347.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2515 628..1232 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1347.t1.intron1Gvermi1347.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2515 139..229 +
Gvermi1347.t1.intron2Gvermi1347.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2515 548..627 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1347.t1.stop1Gvermi1347.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2515 1230..1232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1347.t1 ID=Gvermi1347.t1|Name=Gvermi1347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=354bp
XKQLREEKKQLREEEKQLREKEKQLREKEKQLREEKNLLLQQQQPNASNT
MPYMPASKRPKKPTEKARAYKENKAQEGEPFSINGPGGVALKECFAKGFV
DPATSFHELLYGAHKDEPCVSALHIYKENSLKSAFNKIKLETVTSRKAVE
YEKRKAPIEDLDGLVPLAKRCMKSVPTSTIITPKAAKPSEGDDTNYRPEY
DQAVNVDRKQNEELHVTIEIGYHISSTKELKLTVVGKTKLRIAEPRCILT
SNMDVFEKVYKMHDSIDDYKASMCAAIYEKSLKEKRDNIGDTIYKIGYID
LMCEVDETKEPEVLLMKVKDKACVVRVHLPLPCKDGYGKVDKDYTVMASL
DDL*
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spliced messenger RNA

>Gvermi1347.t1 ID=Gvermi1347.t1|Name=Gvermi1347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1060bp|location=Sequence derived from alignment at ScGOVlb_2515:2..1232+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
GAAGCAGCTACGAGAAGAGAAGAAGCAGCTACGAGAAGAGGAGAAGCAGC
TACGAGAAAAGGAGAAGCAGCTACGAGAAAAGGAGAAGCAGCTACGAGAA
GAGAAGAACCTTTTGTTGCAGCAGCAGCAGCCAAATGCATCCAACACCAT
GCCATACATGCCAGCCAGCAAACGTCCTAAAAAACCAACGGAGAAAGCCA
GGGCTTACAAGGAAAACAAGGCTCAGGAGGGCGAGCCGTTCAGTATCAAT
GGGCCAGGTGGTGTCGCTCTGAAAGAATGTTTTGCCAAGGGTTTTGTTGA
TCCAGCCACAAGCTTCCATGAACTGCTCTATGGTGCGCACAAGGATGAAC
CCTGTGTGAGCGCGCTCCACATTTACAAGGAGAACTCTTTGAAATCAGCT
TTCAACAAAATCAAGTTGGAAACTGTCACCTCACGCAAAGCAGTGGAATA
CGAGAAACGCAAAGCTCCAATTGAAGACCTCGACGGGTTGGTGCCTCTTG
CCAAGAGGTGCATGAAAAGTGTTCCGACTTCGACTATCATTACGCCCAAG
GCAGCCAAGCCGTCGGAAGGTGATGACACCAACTACCGACCTGAATACGA
TCAAGCTGTGAATGTCGACCGCAAGCAAAATGAAGAACTTCATGTCACGA
TTGAGATTGGATACCACATTTCGAGCACGAAGGAACTCAAATTGACGGTC
GTGGGCAAGACGAAACTGCGTATCGCGGAGCCACGCTGCATCCTCACCAG
CAACATGGATGTCTTTGAGAAAGTGTACAAGATGCACGACAGCATCGATG
ATTACAAGGCAAGCATGTGCGCCGCCATTTATGAGAAAAGCTTGAAGGAA
AAGCGCGACAATATTGGCGACACGATCTACAAGATTGGATACATTGACCT
CATGTGTGAGGTCGATGAAACGAAGGAACCAGAAGTGCTCCTAATGAAGG
TCAAGGATAAAGCCTGTGTTGTGCGAGTCCACTTGCCTCTCCCGTGCAAG
GACGGGTATGGAAAAGTTGACAAGGATTATACCGTGATGGCTTCGCTTGA
CGACCTCTAA
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protein sequence of Gvermi1347.t1

>Gvermi1347.t1 ID=Gvermi1347.t1|Name=Gvermi1347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=354bp
XKQLREEKKQLREEEKQLREKEKQLREKEKQLREEKNLLLQQQQPNASNT
MPYMPASKRPKKPTEKARAYKENKAQEGEPFSINGPGGVALKECFAKGFV
DPATSFHELLYGAHKDEPCVSALHIYKENSLKSAFNKIKLETVTSRKAVE
YEKRKAPIEDLDGLVPLAKRCMKSVPTSTIITPKAAKPSEGDDTNYRPEY
DQAVNVDRKQNEELHVTIEIGYHISSTKELKLTVVGKTKLRIAEPRCILT
SNMDVFEKVYKMHDSIDDYKASMCAAIYEKSLKEKRDNIGDTIYKIGYID
LMCEVDETKEPEVLLMKVKDKACVVRVHLPLPCKDGYGKVDKDYTVMASL
DDL*
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mRNA from alignment at ScGOVlb_2515:2..1232+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1347.t1 ID=Gvermi1347.t1|Name=Gvermi1347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1231bp|location=Sequence derived from alignment at ScGOVlb_2515:2..1232+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GAAGCAGCTACGAGAAGAGAAGAAGCAGCTACGAGAAGAGGAGAAGCAGC
TACGAGAAAAGGAGAAGCAGCTACGAGAAAAGGAGAAGCAGCTACGAGAA
GAGAAGAACCTTTTGTTGCAGCAGCAGCAGCCAAATGGTAAGTTTGCTTG
CGTTTCAACAAAAAGCAGCAATCGCAAACTCCATACACAATCGTCTCATT
TTCCTTCCTCTTGGCATAATGTTTGAAGCATCCAACACCATGCCATACAT
GCCAGCCAGCAAACGTCCTAAAAAACCAACGGAGAAAGCCAGGGCTTACA
AGGAAAACAAGGCTCAGGAGGGCGAGCCGTTCAGTATCAATGGGCCAGGT
GGTGTCGCTCTGAAAGAATGTTTTGCCAAGGGTTTTGTTGATCCAGCCAC
AAGCTTCCATGAACTGCTCTATGGTGCGCACAAGGATGAACCCTGTGTGA
GCGCGCTCCACATTTACAAGGAGAACTCTTTGAAATCAGCTTTCAACAAA
ATCAAGTTGGAAACTGTCACCTCACGCAAAGCAGTGGAATACGAGAGTAA
GTAATGTTGCCTGGCTGAATTGATTATAACAATGTTCTGGCTGCTGCCAC
TTCTAACGATTTGATGTTCCTTGTAGAACGCAAAGCTCCAATTGAAGACC
TCGACGGGTTGGTGCCTCTTGCCAAGAGGTGCATGAAAAGTGTTCCGACT
TCGACTATCATTACGCCCAAGGCAGCCAAGCCGTCGGAAGGTGATGACAC
CAACTACCGACCTGAATACGATCAAGCTGTGAATGTCGACCGCAAGCAAA
ATGAAGAACTTCATGTCACGATTGAGATTGGATACCACATTTCGAGCACG
AAGGAACTCAAATTGACGGTCGTGGGCAAGACGAAACTGCGTATCGCGGA
GCCACGCTGCATCCTCACCAGCAACATGGATGTCTTTGAGAAAGTGTACA
AGATGCACGACAGCATCGATGATTACAAGGCAAGCATGTGCGCCGCCATT
TATGAGAAAAGCTTGAAGGAAAAGCGCGACAATATTGGCGACACGATCTA
CAAGATTGGATACATTGACCTCATGTGTGAGGTCGATGAAACGAAGGAAC
CAGAAGTGCTCCTAATGAAGGTCAAGGATAAAGCCTGTGTTGTGCGAGTC
CACTTGCCTCTCCCGTGCAAGGACGGGTATGGAAAAGTTGACAAGGATTA
TACCGTGATGGCTTCGCTTGACGACCTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_2515:2..1232+

>Gvermi1347.t1 ID=Gvermi1347.t1|Name=Gvermi1347.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1060bp|location=Sequence derived from alignment at ScGOVlb_2515:2..1232+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
GAAGCAGCTACGAGAAGAGAAGAAGCAGCTACGAGAAGAGGAGAAGCAGC
TACGAGAAAAGGAGAAGCAGCTACGAGAAAAGGAGAAGCAGCTACGAGAA
GAGAAGAACCTTTTGTTGCAGCAGCAGCAGCCAAATGCATCCAACACCAT
GCCATACATGCCAGCCAGCAAACGTCCTAAAAAACCAACGGAGAAAGCCA
GGGCTTACAAGGAAAACAAGGCTCAGGAGGGCGAGCCGTTCAGTATCAAT
GGGCCAGGTGGTGTCGCTCTGAAAGAATGTTTTGCCAAGGGTTTTGTTGA
TCCAGCCACAAGCTTCCATGAACTGCTCTATGGTGCGCACAAGGATGAAC
CCTGTGTGAGCGCGCTCCACATTTACAAGGAGAACTCTTTGAAATCAGCT
TTCAACAAAATCAAGTTGGAAACTGTCACCTCACGCAAAGCAGTGGAATA
CGAGAAACGCAAAGCTCCAATTGAAGACCTCGACGGGTTGGTGCCTCTTG
CCAAGAGGTGCATGAAAAGTGTTCCGACTTCGACTATCATTACGCCCAAG
GCAGCCAAGCCGTCGGAAGGTGATGACACCAACTACCGACCTGAATACGA
TCAAGCTGTGAATGTCGACCGCAAGCAAAATGAAGAACTTCATGTCACGA
TTGAGATTGGATACCACATTTCGAGCACGAAGGAACTCAAATTGACGGTC
GTGGGCAAGACGAAACTGCGTATCGCGGAGCCACGCTGCATCCTCACCAG
CAACATGGATGTCTTTGAGAAAGTGTACAAGATGCACGACAGCATCGATG
ATTACAAGGCAAGCATGTGCGCCGCCATTTATGAGAAAAGCTTGAAGGAA
AAGCGCGACAATATTGGCGACACGATCTACAAGATTGGATACATTGACCT
CATGTGTGAGGTCGATGAAACGAAGGAACCAGAAGTGCTCCTAATGAAGG
TCAAGGATAAAGCCTGTGTTGTGCGAGTCCACTTGCCTCTCCCGTGCAAG
GACGGGTATGGAAAAGTTGACAAGGATTATACCGTGATGGCTTCGCTTGA
CGACCTCTAA
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