Gvermi13438.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13438.t1
Unique NameGvermi13438.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_8117contigScGOVlb_8117:100..536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13438Gvermi13438Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_8117 100..536 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13438.t1.CDS1Gvermi13438.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_8117 100..536 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13438.t1.exon1Gvermi13438.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_8117 100..536 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13438.t1.start1Gvermi13438.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_8117 534..536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13438.t1Gvermi13438.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_8117 100..536 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13438.t1 ID=Gvermi13438.t1|Name=Gvermi13438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=146bp
MRSLNRCDDAAPRFNLALLMLDGDADEDDVTQAIRLLEDSLEKEQHELIM
LKLADLYVKRSVDVERGVNLYEAAALRFDSEAARFKFVHNLLGCRAPTPD
NCVRVNDFCFKDVKKNGNLGSLVLMAQVRWSVPDRKKALRILDIHX
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spliced messenger RNA

>Gvermi13438.t1 ID=Gvermi13438.t1|Name=Gvermi13438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=437bp|location=Sequence derived from alignment at ScGOVlb_8117:100..536- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCGCTCAACCGGTGCGACGACGCGGCGCCGCGCTTCAATTTAGC
GCTGCTCATGCTGGACGGCGACGCAGACGAGGACGATGTGACTCAGGCCA
TTCGCCTGCTGGAGGATTCTCTGGAAAAGGAGCAGCACGAGCTCATAATG
TTGAAGCTGGCCGATCTGTACGTGAAGCGCAGCGTGGATGTGGAGCGCGG
GGTGAATCTGTACGAAGCGGCGGCTCTGCGGTTCGACTCGGAGGCGGCGC
GGTTCAAGTTCGTGCACAACCTGCTCGGCTGCCGCGCGCCGACGCCCGAC
AATTGCGTGCGGGTGAACGACTTCTGCTTCAAGGACGTGAAAAAGAACGG
GAACCTGGGCTCGTTGGTGCTCATGGCGCAGGTGCGTTGGAGCGTGCCCG
ATCGCAAAAAGGCGCTGCGCATACTGGACATACACCA
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protein sequence of Gvermi13438.t1

>Gvermi13438.t1 ID=Gvermi13438.t1|Name=Gvermi13438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MRSLNRCDDAAPRFNLALLMLDGDADEDDVTQAIRLLEDSLEKEQHELIM
LKLADLYVKRSVDVERGVNLYEAAALRFDSEAARFKFVHNLLGCRAPTPD
NCVRVNDFCFKDVKKNGNLGSLVLMAQVRWSVPDRKKALRILDIHX
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mRNA from alignment at ScGOVlb_8117:100..536-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13438.t1 ID=Gvermi13438.t1|Name=Gvermi13438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=437bp|location=Sequence derived from alignment at ScGOVlb_8117:100..536- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCGCTCAACCGGTGCGACGACGCGGCGCCGCGCTTCAATTTAGC
GCTGCTCATGCTGGACGGCGACGCAGACGAGGACGATGTGACTCAGGCCA
TTCGCCTGCTGGAGGATTCTCTGGAAAAGGAGCAGCACGAGCTCATAATG
TTGAAGCTGGCCGATCTGTACGTGAAGCGCAGCGTGGATGTGGAGCGCGG
GGTGAATCTGTACGAAGCGGCGGCTCTGCGGTTCGACTCGGAGGCGGCGC
GGTTCAAGTTCGTGCACAACCTGCTCGGCTGCCGCGCGCCGACGCCCGAC
AATTGCGTGCGGGTGAACGACTTCTGCTTCAAGGACGTGAAAAAGAACGG
GAACCTGGGCTCGTTGGTGCTCATGGCGCAGGTGCGTTGGAGCGTGCCCG
ATCGCAAAAAGGCGCTGCGCATACTGGACATACACCA
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Coding sequence (CDS) from alignment at ScGOVlb_8117:100..536-

>Gvermi13438.t1 ID=Gvermi13438.t1|Name=Gvermi13438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=437bp|location=Sequence derived from alignment at ScGOVlb_8117:100..536- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCGCTCAACCGGTGCGACGACGCGGCGCCGCGCTTCAATTTAGC
GCTGCTCATGCTGGACGGCGACGCAGACGAGGACGATGTGACTCAGGCCA
TTCGCCTGCTGGAGGATTCTCTGGAAAAGGAGCAGCACGAGCTCATAATG
TTGAAGCTGGCCGATCTGTACGTGAAGCGCAGCGTGGATGTGGAGCGCGG
GGTGAATCTGTACGAAGCGGCGGCTCTGCGGTTCGACTCGGAGGCGGCGC
GGTTCAAGTTCGTGCACAACCTGCTCGGCTGCCGCGCGCCGACGCCCGAC
AATTGCGTGCGGGTGAACGACTTCTGCTTCAAGGACGTGAAAAAGAACGG
GAACCTGGGCTCGTTGGTGCTCATGGCGCAGGTGCGTTGGAGCGTGCCCG
ATCGCAAAAAGGCGCTGCGCATACTGGACATACACCA
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