Gvermi13403.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13403.t1
Unique NameGvermi13403.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length397
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2560contigScGOVlb_2560:176..1366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13403Gvermi13403Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2560 176..1366 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13403.t1.stop1Gvermi13403.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2560 176..178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13403.t1.CDS1Gvermi13403.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2560 176..1366 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13403.t1.exon1Gvermi13403.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2560 176..1366 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13403.t1.start1Gvermi13403.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2560 1364..1366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13403.t1Gvermi13403.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2560 176..1366 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13403.t1 ID=Gvermi13403.t1|Name=Gvermi13403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=397bp
MHHPQMPTVAEEQLRLPLRHGGFGLMDVTEHEADAAYLSSAALAHDAMRD
GPPDFRPFAEGDVATGLQEKWTALRAAMPPEADWGPEELDNVFIATGLPG
VSRKVTRAVAQTRHDALLQQLGSTPGGAQDLARMRSCACRVASLFLDSLP
TNRMLTLNDGDFVHGMRFRGGLSPLPPLDGEVICDCNARVKPGDVDHAMT
CRHNADCWTLRHNIAVTAWRRRVRAAGVSTSIEPVMRSLDRRYRDDSRGD
ILANGPDVDVYVLDVSFIHPSGVAVVGKASGAQGHAAAVREQFKLNKYKE
SVQGSYKVVPVVHETYGRLGSHAMQYLNTLAVSLVGPFDKRAKARWIENS
LREFSAATVKGNGFVIRKTMSRVARLTGAQFVPGDRLAGLHLLGSM*
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spliced messenger RNA

>Gvermi13403.t1 ID=Gvermi13403.t1|Name=Gvermi13403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at ScGOVlb_2560:176..1366- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCACCCGCAGATGCCCACCGTCGCCGAGGAGCAACTCCGCCTACC
GCTGCGCCACGGCGGATTTGGCCTCATGGACGTCACGGAGCACGAGGCAG
ATGCAGCCTATCTGTCCAGCGCCGCGCTGGCGCATGACGCCATGCGCGAT
GGCCCCCCCGACTTCCGCCCATTCGCCGAAGGCGACGTTGCCACAGGCCT
ACAAGAAAAATGGACAGCGCTGCGTGCAGCAATGCCGCCGGAGGCAGACT
GGGGGCCAGAGGAGCTCGACAACGTCTTCATCGCCACTGGCCTTCCCGGT
GTGAGCAGAAAAGTGACCAGGGCAGTAGCGCAGACACGGCACGACGCGCT
GCTGCAACAGCTGGGCAGCACCCCTGGTGGTGCACAAGACCTTGCGCGCA
TGCGCAGCTGCGCCTGTCGTGTTGCCTCACTGTTCCTGGATTCCCTCCCA
ACCAACCGCATGCTGACTCTGAATGATGGGGATTTTGTGCATGGGATGCG
GTTCAGGGGCGGACTTTCCCCCCTGCCGCCGTTAGATGGGGAAGTGATAT
GTGATTGCAATGCTCGGGTGAAGCCCGGCGACGTAGATCATGCCATGACA
TGTCGACACAATGCCGACTGCTGGACGTTGCGCCACAACATTGCCGTTAC
GGCTTGGCGCCGTCGAGTAAGAGCGGCAGGGGTGTCCACATCAATTGAGC
CTGTGATGCGCAGCCTGGACAGACGCTACAGGGACGACAGTAGGGGGGAC
ATCCTAGCAAATGGTCCGGACGTGGACGTGTATGTACTAGATGTCAGCTT
CATCCACCCATCTGGGGTGGCTGTGGTGGGGAAAGCATCGGGGGCACAGG
GGCACGCGGCCGCCGTACGCGAACAGTTCAAACTCAACAAGTACAAAGAG
AGTGTGCAGGGATCGTACAAGGTGGTGCCGGTTGTGCACGAGACATATGG
CAGACTAGGGTCGCATGCCATGCAGTACCTCAACACGCTGGCAGTGTCGT
TGGTTGGGCCGTTCGACAAGAGAGCAAAGGCTCGCTGGATTGAGAACTCC
TTGCGGGAGTTCAGTGCGGCGACAGTGAAAGGAAACGGGTTTGTGATCAG
AAAGACCATGTCCAGGGTAGCACGGCTCACGGGTGCGCAGTTTGTGCCAG
GTGATCGCCTGGCCGGCTTGCATCTGCTGGGTAGCATGTGA
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protein sequence of Gvermi13403.t1

>Gvermi13403.t1 ID=Gvermi13403.t1|Name=Gvermi13403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=397bp
MHHPQMPTVAEEQLRLPLRHGGFGLMDVTEHEADAAYLSSAALAHDAMRD
GPPDFRPFAEGDVATGLQEKWTALRAAMPPEADWGPEELDNVFIATGLPG
VSRKVTRAVAQTRHDALLQQLGSTPGGAQDLARMRSCACRVASLFLDSLP
TNRMLTLNDGDFVHGMRFRGGLSPLPPLDGEVICDCNARVKPGDVDHAMT
CRHNADCWTLRHNIAVTAWRRRVRAAGVSTSIEPVMRSLDRRYRDDSRGD
ILANGPDVDVYVLDVSFIHPSGVAVVGKASGAQGHAAAVREQFKLNKYKE
SVQGSYKVVPVVHETYGRLGSHAMQYLNTLAVSLVGPFDKRAKARWIENS
LREFSAATVKGNGFVIRKTMSRVARLTGAQFVPGDRLAGLHLLGSM*
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mRNA from alignment at ScGOVlb_2560:176..1366-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13403.t1 ID=Gvermi13403.t1|Name=Gvermi13403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at ScGOVlb_2560:176..1366- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCACCCGCAGATGCCCACCGTCGCCGAGGAGCAACTCCGCCTACC
GCTGCGCCACGGCGGATTTGGCCTCATGGACGTCACGGAGCACGAGGCAG
ATGCAGCCTATCTGTCCAGCGCCGCGCTGGCGCATGACGCCATGCGCGAT
GGCCCCCCCGACTTCCGCCCATTCGCCGAAGGCGACGTTGCCACAGGCCT
ACAAGAAAAATGGACAGCGCTGCGTGCAGCAATGCCGCCGGAGGCAGACT
GGGGGCCAGAGGAGCTCGACAACGTCTTCATCGCCACTGGCCTTCCCGGT
GTGAGCAGAAAAGTGACCAGGGCAGTAGCGCAGACACGGCACGACGCGCT
GCTGCAACAGCTGGGCAGCACCCCTGGTGGTGCACAAGACCTTGCGCGCA
TGCGCAGCTGCGCCTGTCGTGTTGCCTCACTGTTCCTGGATTCCCTCCCA
ACCAACCGCATGCTGACTCTGAATGATGGGGATTTTGTGCATGGGATGCG
GTTCAGGGGCGGACTTTCCCCCCTGCCGCCGTTAGATGGGGAAGTGATAT
GTGATTGCAATGCTCGGGTGAAGCCCGGCGACGTAGATCATGCCATGACA
TGTCGACACAATGCCGACTGCTGGACGTTGCGCCACAACATTGCCGTTAC
GGCTTGGCGCCGTCGAGTAAGAGCGGCAGGGGTGTCCACATCAATTGAGC
CTGTGATGCGCAGCCTGGACAGACGCTACAGGGACGACAGTAGGGGGGAC
ATCCTAGCAAATGGTCCGGACGTGGACGTGTATGTACTAGATGTCAGCTT
CATCCACCCATCTGGGGTGGCTGTGGTGGGGAAAGCATCGGGGGCACAGG
GGCACGCGGCCGCCGTACGCGAACAGTTCAAACTCAACAAGTACAAAGAG
AGTGTGCAGGGATCGTACAAGGTGGTGCCGGTTGTGCACGAGACATATGG
CAGACTAGGGTCGCATGCCATGCAGTACCTCAACACGCTGGCAGTGTCGT
TGGTTGGGCCGTTCGACAAGAGAGCAAAGGCTCGCTGGATTGAGAACTCC
TTGCGGGAGTTCAGTGCGGCGACAGTGAAAGGAAACGGGTTTGTGATCAG
AAAGACCATGTCCAGGGTAGCACGGCTCACGGGTGCGCAGTTTGTGCCAG
GTGATCGCCTGGCCGGCTTGCATCTGCTGGGTAGCATGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_2560:176..1366-

>Gvermi13403.t1 ID=Gvermi13403.t1|Name=Gvermi13403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1191bp|location=Sequence derived from alignment at ScGOVlb_2560:176..1366- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCACCCGCAGATGCCCACCGTCGCCGAGGAGCAACTCCGCCTACC
GCTGCGCCACGGCGGATTTGGCCTCATGGACGTCACGGAGCACGAGGCAG
ATGCAGCCTATCTGTCCAGCGCCGCGCTGGCGCATGACGCCATGCGCGAT
GGCCCCCCCGACTTCCGCCCATTCGCCGAAGGCGACGTTGCCACAGGCCT
ACAAGAAAAATGGACAGCGCTGCGTGCAGCAATGCCGCCGGAGGCAGACT
GGGGGCCAGAGGAGCTCGACAACGTCTTCATCGCCACTGGCCTTCCCGGT
GTGAGCAGAAAAGTGACCAGGGCAGTAGCGCAGACACGGCACGACGCGCT
GCTGCAACAGCTGGGCAGCACCCCTGGTGGTGCACAAGACCTTGCGCGCA
TGCGCAGCTGCGCCTGTCGTGTTGCCTCACTGTTCCTGGATTCCCTCCCA
ACCAACCGCATGCTGACTCTGAATGATGGGGATTTTGTGCATGGGATGCG
GTTCAGGGGCGGACTTTCCCCCCTGCCGCCGTTAGATGGGGAAGTGATAT
GTGATTGCAATGCTCGGGTGAAGCCCGGCGACGTAGATCATGCCATGACA
TGTCGACACAATGCCGACTGCTGGACGTTGCGCCACAACATTGCCGTTAC
GGCTTGGCGCCGTCGAGTAAGAGCGGCAGGGGTGTCCACATCAATTGAGC
CTGTGATGCGCAGCCTGGACAGACGCTACAGGGACGACAGTAGGGGGGAC
ATCCTAGCAAATGGTCCGGACGTGGACGTGTATGTACTAGATGTCAGCTT
CATCCACCCATCTGGGGTGGCTGTGGTGGGGAAAGCATCGGGGGCACAGG
GGCACGCGGCCGCCGTACGCGAACAGTTCAAACTCAACAAGTACAAAGAG
AGTGTGCAGGGATCGTACAAGGTGGTGCCGGTTGTGCACGAGACATATGG
CAGACTAGGGTCGCATGCCATGCAGTACCTCAACACGCTGGCAGTGTCGT
TGGTTGGGCCGTTCGACAAGAGAGCAAAGGCTCGCTGGATTGAGAACTCC
TTGCGGGAGTTCAGTGCGGCGACAGTGAAAGGAAACGGGTTTGTGATCAG
AAAGACCATGTCCAGGGTAGCACGGCTCACGGGTGCGCAGTTTGTGCCAG
GTGATCGCCTGGCCGGCTTGCATCTGCTGGGTAGCATGTGA
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