Gvermi13398.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13398.t1
Unique NameGvermi13398.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length534
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1392contigScGOVlb_1392:307..1908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15717471
Max annot lvl33154|Opisthokonta
Evalue8.98e-29
EggNOG OGs2E4DK@1|root,2SBAH@2759|Eukaryota,3AD4A@33154|Opisthokonta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13398Gvermi13398Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1392 307..1908 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13398.t1.stop1Gvermi13398.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1392 307..309 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13398.t1.CDS1Gvermi13398.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1392 307..1908 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13398.t1.exon1Gvermi13398.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1392 307..1908 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13398.t1.start1Gvermi13398.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1392 1906..1908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13398.t1Gvermi13398.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1392 307..1908 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13398.t1 ID=Gvermi13398.t1|Name=Gvermi13398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=534bp
MLVADLHSYTEASLKELVEKKGGTWELVPSWLDVNNLRSLLRMERHQIEH
VAQSVRHGQPPIDVGSISSSSASIPSNHDSACVEVRDAEFALFESIGLPR
DEVSHVLWGNLANSGHDRLQWSSESDICGFVTLFLREVACELNLALEFRA
EVGFFNLRPDITVVKMFGVPVGVVEVKRPTKGILDNGSVLGELYDYMKQV
VNFYGLKQVFGILTTYQEWRVCWMSDEHSAQLASVAPVEDTDAEPRTPVK
AGKRKEKTSPPGLTPSKTMKTTHGLDHEVAAENSGGDVEAVETDDAERVM
MSTRVWNVDENVFNVIGSALWKMNCAQVDNAMIGRGQMVIQVTEDSFFWC
KRPKATFHENLQWNKVPRAKSLLLLEDLGVGHSGRVWLVGSQSGRVGVLK
FSVAQSKGNWKGSLEELQKRAMETELKWWRKIYPALGKMCSVQKFAGYWT
LLMPHLCTPERNEGTLELVEACLRENFANHGLKHGDVAWRNIGVYKTDTG
ENACIVYDLESVKESTSSDWVEGAVDELRERLP*
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spliced messenger RNA

>Gvermi13398.t1 ID=Gvermi13398.t1|Name=Gvermi13398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at ScGOVlb_1392:307..1908- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTTGCCGATCTGCACAGCTACACAGAGGCCTCTTTGAAGGAGCT
AGTGGAGAAGAAGGGAGGCACTTGGGAGCTTGTTCCCTCATGGCTTGATG
TCAACAACCTGCGCTCGCTGCTGCGTATGGAGCGGCATCAGATTGAACAC
GTGGCGCAAAGTGTCCGTCATGGCCAGCCCCCGATTGATGTCGGATCGAT
TTCGTCCTCCTCTGCATCTATCCCAAGCAATCATGATTCTGCTTGTGTGG
AAGTTAGAGATGCTGAGTTTGCCCTGTTTGAATCTATTGGCTTGCCACGA
GACGAAGTGTCGCACGTCCTTTGGGGCAACCTTGCTAATAGTGGGCATGA
TCGCTTGCAGTGGTCATCTGAAAGTGACATTTGTGGATTTGTTACTCTGT
TTTTGAGAGAAGTTGCATGTGAGCTCAATCTCGCTTTGGAATTTCGTGCT
GAAGTTGGCTTCTTCAACTTGCGTCCCGATATTACTGTGGTGAAGATGTT
TGGTGTCCCTGTCGGCGTTGTTGAGGTGAAGCGTCCGACCAAGGGGATTT
TGGACAATGGCTCGGTGCTTGGGGAGCTTTATGACTACATGAAGCAAGTG
GTCAACTTCTATGGATTGAAGCAAGTGTTTGGCATATTGACAACGTACCA
AGAGTGGCGGGTGTGCTGGATGAGTGATGAGCATTCTGCTCAACTGGCAA
GTGTTGCGCCTGTTGAAGATACTGATGCTGAGCCGCGTACCCCTGTCAAA
GCTGGGAAAAGGAAGGAAAAGACATCTCCGCCAGGTTTAACGCCTTCAAA
AACGATGAAGACAACTCATGGATTGGATCATGAAGTAGCAGCAGAGAATA
GCGGTGGCGATGTTGAGGCGGTGGAAACGGATGATGCAGAGAGGGTCATG
ATGAGCACGCGTGTTTGGAACGTTGATGAGAATGTGTTCAATGTGATTGG
ATCAGCGCTGTGGAAGATGAATTGTGCACAAGTTGACAACGCCATGATTG
GCCGAGGACAAATGGTGATTCAAGTGACCGAAGACTCGTTTTTTTGGTGC
AAGAGACCAAAGGCCACTTTTCACGAGAATCTACAGTGGAACAAGGTGCC
TCGCGCAAAGAGCTTGCTTTTACTGGAAGATCTTGGCGTTGGTCATTCTG
GACGTGTGTGGCTTGTTGGTTCTCAGAGCGGACGTGTTGGTGTCCTCAAG
TTCAGTGTTGCACAGTCAAAAGGCAATTGGAAGGGCTCTTTGGAGGAGCT
TCAGAAGCGTGCAATGGAAACTGAGCTCAAATGGTGGAGGAAGATTTATC
CAGCACTGGGCAAGATGTGTAGTGTGCAAAAGTTTGCTGGCTACTGGACT
TTGCTGATGCCTCACCTATGCACGCCTGAACGGAATGAGGGCACACTGGA
GCTTGTGGAAGCGTGTTTGAGAGAAAATTTTGCAAACCATGGGCTGAAGC
ATGGGGATGTGGCATGGCGGAATATTGGCGTCTACAAAACGGATACTGGC
GAGAACGCTTGCATTGTGTATGATCTGGAAAGTGTTAAGGAGAGCACGAG
CTCTGACTGGGTTGAAGGCGCAGTGGACGAGCTACGCGAGAGGCTTCCAT
AA
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protein sequence of Gvermi13398.t1

>Gvermi13398.t1 ID=Gvermi13398.t1|Name=Gvermi13398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=534bp
MLVADLHSYTEASLKELVEKKGGTWELVPSWLDVNNLRSLLRMERHQIEH
VAQSVRHGQPPIDVGSISSSSASIPSNHDSACVEVRDAEFALFESIGLPR
DEVSHVLWGNLANSGHDRLQWSSESDICGFVTLFLREVACELNLALEFRA
EVGFFNLRPDITVVKMFGVPVGVVEVKRPTKGILDNGSVLGELYDYMKQV
VNFYGLKQVFGILTTYQEWRVCWMSDEHSAQLASVAPVEDTDAEPRTPVK
AGKRKEKTSPPGLTPSKTMKTTHGLDHEVAAENSGGDVEAVETDDAERVM
MSTRVWNVDENVFNVIGSALWKMNCAQVDNAMIGRGQMVIQVTEDSFFWC
KRPKATFHENLQWNKVPRAKSLLLLEDLGVGHSGRVWLVGSQSGRVGVLK
FSVAQSKGNWKGSLEELQKRAMETELKWWRKIYPALGKMCSVQKFAGYWT
LLMPHLCTPERNEGTLELVEACLRENFANHGLKHGDVAWRNIGVYKTDTG
ENACIVYDLESVKESTSSDWVEGAVDELRERLP*
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mRNA from alignment at ScGOVlb_1392:307..1908-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13398.t1 ID=Gvermi13398.t1|Name=Gvermi13398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1602bp|location=Sequence derived from alignment at ScGOVlb_1392:307..1908- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGTTGCCGATCTGCACAGCTACACAGAGGCCTCTTTGAAGGAGCT
AGTGGAGAAGAAGGGAGGCACTTGGGAGCTTGTTCCCTCATGGCTTGATG
TCAACAACCTGCGCTCGCTGCTGCGTATGGAGCGGCATCAGATTGAACAC
GTGGCGCAAAGTGTCCGTCATGGCCAGCCCCCGATTGATGTCGGATCGAT
TTCGTCCTCCTCTGCATCTATCCCAAGCAATCATGATTCTGCTTGTGTGG
AAGTTAGAGATGCTGAGTTTGCCCTGTTTGAATCTATTGGCTTGCCACGA
GACGAAGTGTCGCACGTCCTTTGGGGCAACCTTGCTAATAGTGGGCATGA
TCGCTTGCAGTGGTCATCTGAAAGTGACATTTGTGGATTTGTTACTCTGT
TTTTGAGAGAAGTTGCATGTGAGCTCAATCTCGCTTTGGAATTTCGTGCT
GAAGTTGGCTTCTTCAACTTGCGTCCCGATATTACTGTGGTGAAGATGTT
TGGTGTCCCTGTCGGCGTTGTTGAGGTGAAGCGTCCGACCAAGGGGATTT
TGGACAATGGCTCGGTGCTTGGGGAGCTTTATGACTACATGAAGCAAGTG
GTCAACTTCTATGGATTGAAGCAAGTGTTTGGCATATTGACAACGTACCA
AGAGTGGCGGGTGTGCTGGATGAGTGATGAGCATTCTGCTCAACTGGCAA
GTGTTGCGCCTGTTGAAGATACTGATGCTGAGCCGCGTACCCCTGTCAAA
GCTGGGAAAAGGAAGGAAAAGACATCTCCGCCAGGTTTAACGCCTTCAAA
AACGATGAAGACAACTCATGGATTGGATCATGAAGTAGCAGCAGAGAATA
GCGGTGGCGATGTTGAGGCGGTGGAAACGGATGATGCAGAGAGGGTCATG
ATGAGCACGCGTGTTTGGAACGTTGATGAGAATGTGTTCAATGTGATTGG
ATCAGCGCTGTGGAAGATGAATTGTGCACAAGTTGACAACGCCATGATTG
GCCGAGGACAAATGGTGATTCAAGTGACCGAAGACTCGTTTTTTTGGTGC
AAGAGACCAAAGGCCACTTTTCACGAGAATCTACAGTGGAACAAGGTGCC
TCGCGCAAAGAGCTTGCTTTTACTGGAAGATCTTGGCGTTGGTCATTCTG
GACGTGTGTGGCTTGTTGGTTCTCAGAGCGGACGTGTTGGTGTCCTCAAG
TTCAGTGTTGCACAGTCAAAAGGCAATTGGAAGGGCTCTTTGGAGGAGCT
TCAGAAGCGTGCAATGGAAACTGAGCTCAAATGGTGGAGGAAGATTTATC
CAGCACTGGGCAAGATGTGTAGTGTGCAAAAGTTTGCTGGCTACTGGACT
TTGCTGATGCCTCACCTATGCACGCCTGAACGGAATGAGGGCACACTGGA
GCTTGTGGAAGCGTGTTTGAGAGAAAATTTTGCAAACCATGGGCTGAAGC
ATGGGGATGTGGCATGGCGGAATATTGGCGTCTACAAAACGGATACTGGC
GAGAACGCTTGCATTGTGTATGATCTGGAAAGTGTTAAGGAGAGCACGAG
CTCTGACTGGGTTGAAGGCGCAGTGGACGAGCTACGCGAGAGGCTTCCAT
AA
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Coding sequence (CDS) from alignment at ScGOVlb_1392:307..1908-

>Gvermi13398.t1 ID=Gvermi13398.t1|Name=Gvermi13398.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1602bp|location=Sequence derived from alignment at ScGOVlb_1392:307..1908- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGTTGCCGATCTGCACAGCTACACAGAGGCCTCTTTGAAGGAGCT
AGTGGAGAAGAAGGGAGGCACTTGGGAGCTTGTTCCCTCATGGCTTGATG
TCAACAACCTGCGCTCGCTGCTGCGTATGGAGCGGCATCAGATTGAACAC
GTGGCGCAAAGTGTCCGTCATGGCCAGCCCCCGATTGATGTCGGATCGAT
TTCGTCCTCCTCTGCATCTATCCCAAGCAATCATGATTCTGCTTGTGTGG
AAGTTAGAGATGCTGAGTTTGCCCTGTTTGAATCTATTGGCTTGCCACGA
GACGAAGTGTCGCACGTCCTTTGGGGCAACCTTGCTAATAGTGGGCATGA
TCGCTTGCAGTGGTCATCTGAAAGTGACATTTGTGGATTTGTTACTCTGT
TTTTGAGAGAAGTTGCATGTGAGCTCAATCTCGCTTTGGAATTTCGTGCT
GAAGTTGGCTTCTTCAACTTGCGTCCCGATATTACTGTGGTGAAGATGTT
TGGTGTCCCTGTCGGCGTTGTTGAGGTGAAGCGTCCGACCAAGGGGATTT
TGGACAATGGCTCGGTGCTTGGGGAGCTTTATGACTACATGAAGCAAGTG
GTCAACTTCTATGGATTGAAGCAAGTGTTTGGCATATTGACAACGTACCA
AGAGTGGCGGGTGTGCTGGATGAGTGATGAGCATTCTGCTCAACTGGCAA
GTGTTGCGCCTGTTGAAGATACTGATGCTGAGCCGCGTACCCCTGTCAAA
GCTGGGAAAAGGAAGGAAAAGACATCTCCGCCAGGTTTAACGCCTTCAAA
AACGATGAAGACAACTCATGGATTGGATCATGAAGTAGCAGCAGAGAATA
GCGGTGGCGATGTTGAGGCGGTGGAAACGGATGATGCAGAGAGGGTCATG
ATGAGCACGCGTGTTTGGAACGTTGATGAGAATGTGTTCAATGTGATTGG
ATCAGCGCTGTGGAAGATGAATTGTGCACAAGTTGACAACGCCATGATTG
GCCGAGGACAAATGGTGATTCAAGTGACCGAAGACTCGTTTTTTTGGTGC
AAGAGACCAAAGGCCACTTTTCACGAGAATCTACAGTGGAACAAGGTGCC
TCGCGCAAAGAGCTTGCTTTTACTGGAAGATCTTGGCGTTGGTCATTCTG
GACGTGTGTGGCTTGTTGGTTCTCAGAGCGGACGTGTTGGTGTCCTCAAG
TTCAGTGTTGCACAGTCAAAAGGCAATTGGAAGGGCTCTTTGGAGGAGCT
TCAGAAGCGTGCAATGGAAACTGAGCTCAAATGGTGGAGGAAGATTTATC
CAGCACTGGGCAAGATGTGTAGTGTGCAAAAGTTTGCTGGCTACTGGACT
TTGCTGATGCCTCACCTATGCACGCCTGAACGGAATGAGGGCACACTGGA
GCTTGTGGAAGCGTGTTTGAGAGAAAATTTTGCAAACCATGGGCTGAAGC
ATGGGGATGTGGCATGGCGGAATATTGGCGTCTACAAAACGGATACTGGC
GAGAACGCTTGCATTGTGTATGATCTGGAAAGTGTTAAGGAGAGCACGAG
CTCTGACTGGGTTGAAGGCGCAGTGGACGAGCTACGCGAGAGGCTTCCAT
AA
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