Gvermi13346.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi13346.t1
Unique Name	Gvermi13346.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1971	contig	ScGOVlb_1971:458..1607 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4787.PITG_12173T0
Max annot lvl	4776\|Peronosporales
Evalue	7.76e-07
EggNOG OGs	29IPV@1\|root,2RRXI@2759\|Eukaryota,3QHHT@4776\|Peronosporales

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi13346	Gvermi13346	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1971 458..1607 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13346.t1.start1	Gvermi13346.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1971 458..460 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13346.t1.CDS1	Gvermi13346.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1971 458..1607 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13346.t1.exon1	Gvermi13346.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1971 458..1607 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi13346.t1	Gvermi13346.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1971 458..1607 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1971:458..1607+
coding sequence from alignment at ScGOVlb_1971:458..1607+

mRNA sequence

>Gvermi13346.t1 ID=Gvermi13346.t1|Name=Gvermi13346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp
MPDEEVRVEPETESVVPPEEKTADSERVAAETIFGSDSTEEDDMEEKPEK
RIENSSEAGQTTLVQMIQPIKAPALKSFSRLDLAEFQMAHSRYLISCRNH
GVEGRSVLECLDPKLLVVLSVQYLQKPAKDVTDEDLNGFIQNRLMKDEHF
TEENLKRIFSKLKMDLSEADPVQRVIRYNMDYLTLMASHGLSALANNVGF
RKQLVQLLLEGIRPSNLRQLMRQKTRTSDARSDPIAFFDLLETWAPLQDV
FHSETIKTAKYINARTVPPNKVLRGSRSAGPRQRPAYPRKENISFGKTNR
KWSCLICGKTNHSTKEHRGASKEDIDKAFQKYRDEKAVSEYCEIPISNSR
IVEKESGNVSEESLATPRDGLEDGSQNAFPINPX

spliced messenger RNA

>Gvermi13346.t1 ID=Gvermi13346.t1|Name=Gvermi13346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1150bp|location=Sequence derived from alignment at ScGOVlb_1971:458..1607+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGACGAGGAAGTTCGTGTGGAGCCTGAGACGGAGTCCGTTGTGCC
ACCTGAGGAGAAGACTGCAGATTCAGAGCGCGTGGCGGCGGAAACTATAT
TTGGAAGCGACTCCACGGAAGAAGATGATATGGAAGAGAAACCGGAGAAA
AGGATCGAAAATTCCTCGGAAGCCGGTCAAACGACTCTCGTCCAAATGAT
CCAACCGATAAAGGCGCCAGCTTTAAAGTCTTTTTCACGACTGGACCTAG
CCGAATTTCAAATGGCTCATTCGCGATACTTGATAAGTTGCCGAAATCAC
GGAGTGGAAGGTCGATCAGTCCTGGAATGTTTGGATCCAAAGTTGCTCGT
GGTGCTATCCGTACAGTATCTGCAAAAACCAGCGAAGGATGTTACAGACG
AAGATTTGAACGGGTTCATTCAAAATCGCTTGATGAAGGATGAACATTTT
ACCGAGGAAAACTTGAAGAGGATTTTTTCAAAGCTGAAGATGGATTTGAG
TGAAGCCGATCCTGTCCAAAGAGTGATCCGATACAATATGGATTATCTCA
CACTGATGGCATCTCATGGACTCAGTGCGTTGGCCAATAATGTGGGATTT
CGAAAGCAATTGGTCCAACTGTTGTTGGAAGGAATTCGTCCATCGAATTT
GCGACAGCTAATGCGGCAGAAGACTCGAACCAGTGACGCCCGGAGTGATC
CTATTGCCTTTTTTGACCTTTTGGAAACATGGGCGCCATTGCAAGATGTG
TTTCACTCCGAGACCATCAAGACCGCAAAGTATATCAATGCTCGCACGGT
CCCTCCAAACAAGGTTTTGAGAGGAAGTCGAAGTGCTGGACCACGTCAGA
GGCCGGCCTATCCTCGAAAAGAAAACATCTCTTTTGGGAAGACTAATCGT
AAATGGTCTTGTCTGATCTGTGGAAAGACGAACCATTCTACGAAAGAACA
TCGCGGTGCTTCAAAGGAAGACATCGACAAGGCTTTTCAAAAGTACAGAG
ATGAAAAAGCGGTAAGCGAATATTGTGAAATTCCAATATCTAACTCGCGG
ATTGTAGAAAAAGAATCCGGGAACGTTTCAGAAGAGAGCCTAGCCACTCC
AAGGGATGGCCTAGAGGATGGTAGCCAGAATGCGTTTCCTATTAATCCTG

protein sequence of Gvermi13346.t1

>Gvermi13346.t1 ID=Gvermi13346.t1|Name=Gvermi13346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=384bp
MPDEEVRVEPETESVVPPEEKTADSERVAAETIFGSDSTEEDDMEEKPEK
RIENSSEAGQTTLVQMIQPIKAPALKSFSRLDLAEFQMAHSRYLISCRNH
GVEGRSVLECLDPKLLVVLSVQYLQKPAKDVTDEDLNGFIQNRLMKDEHF
TEENLKRIFSKLKMDLSEADPVQRVIRYNMDYLTLMASHGLSALANNVGF
RKQLVQLLLEGIRPSNLRQLMRQKTRTSDARSDPIAFFDLLETWAPLQDV
FHSETIKTAKYINARTVPPNKVLRGSRSAGPRQRPAYPRKENISFGKTNR
KWSCLICGKTNHSTKEHRGASKEDIDKAFQKYRDEKAVSEYCEIPISNSR
IVEKESGNVSEESLATPRDGLEDGSQNAFPINPX

mRNA from alignment at ScGOVlb_1971:458..1607+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi13346.t1 ID=Gvermi13346.t1|Name=Gvermi13346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1150bp|location=Sequence derived from alignment at ScGOVlb_1971:458..1607+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGACGAGGAAGTTCGTGTGGAGCCTGAGACGGAGTCCGTTGTGCC
ACCTGAGGAGAAGACTGCAGATTCAGAGCGCGTGGCGGCGGAAACTATAT
TTGGAAGCGACTCCACGGAAGAAGATGATATGGAAGAGAAACCGGAGAAA
AGGATCGAAAATTCCTCGGAAGCCGGTCAAACGACTCTCGTCCAAATGAT
CCAACCGATAAAGGCGCCAGCTTTAAAGTCTTTTTCACGACTGGACCTAG
CCGAATTTCAAATGGCTCATTCGCGATACTTGATAAGTTGCCGAAATCAC
GGAGTGGAAGGTCGATCAGTCCTGGAATGTTTGGATCCAAAGTTGCTCGT
GGTGCTATCCGTACAGTATCTGCAAAAACCAGCGAAGGATGTTACAGACG
AAGATTTGAACGGGTTCATTCAAAATCGCTTGATGAAGGATGAACATTTT
ACCGAGGAAAACTTGAAGAGGATTTTTTCAAAGCTGAAGATGGATTTGAG
TGAAGCCGATCCTGTCCAAAGAGTGATCCGATACAATATGGATTATCTCA
CACTGATGGCATCTCATGGACTCAGTGCGTTGGCCAATAATGTGGGATTT
CGAAAGCAATTGGTCCAACTGTTGTTGGAAGGAATTCGTCCATCGAATTT
GCGACAGCTAATGCGGCAGAAGACTCGAACCAGTGACGCCCGGAGTGATC
CTATTGCCTTTTTTGACCTTTTGGAAACATGGGCGCCATTGCAAGATGTG
TTTCACTCCGAGACCATCAAGACCGCAAAGTATATCAATGCTCGCACGGT
CCCTCCAAACAAGGTTTTGAGAGGAAGTCGAAGTGCTGGACCACGTCAGA
GGCCGGCCTATCCTCGAAAAGAAAACATCTCTTTTGGGAAGACTAATCGT
AAATGGTCTTGTCTGATCTGTGGAAAGACGAACCATTCTACGAAAGAACA
TCGCGGTGCTTCAAAGGAAGACATCGACAAGGCTTTTCAAAAGTACAGAG
ATGAAAAAGCGGTAAGCGAATATTGTGAAATTCCAATATCTAACTCGCGG
ATTGTAGAAAAAGAATCCGGGAACGTTTCAGAAGAGAGCCTAGCCACTCC
AAGGGATGGCCTAGAGGATGGTAGCCAGAATGCGTTTCCTATTAATCCTG

Coding sequence (CDS) from alignment at ScGOVlb_1971:458..1607+

>Gvermi13346.t1 ID=Gvermi13346.t1|Name=Gvermi13346.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1150bp|location=Sequence derived from alignment at ScGOVlb_1971:458..1607+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGACGAGGAAGTTCGTGTGGAGCCTGAGACGGAGTCCGTTGTGCC
ACCTGAGGAGAAGACTGCAGATTCAGAGCGCGTGGCGGCGGAAACTATAT
TTGGAAGCGACTCCACGGAAGAAGATGATATGGAAGAGAAACCGGAGAAA
AGGATCGAAAATTCCTCGGAAGCCGGTCAAACGACTCTCGTCCAAATGAT
CCAACCGATAAAGGCGCCAGCTTTAAAGTCTTTTTCACGACTGGACCTAG
CCGAATTTCAAATGGCTCATTCGCGATACTTGATAAGTTGCCGAAATCAC
GGAGTGGAAGGTCGATCAGTCCTGGAATGTTTGGATCCAAAGTTGCTCGT
GGTGCTATCCGTACAGTATCTGCAAAAACCAGCGAAGGATGTTACAGACG
AAGATTTGAACGGGTTCATTCAAAATCGCTTGATGAAGGATGAACATTTT
ACCGAGGAAAACTTGAAGAGGATTTTTTCAAAGCTGAAGATGGATTTGAG
TGAAGCCGATCCTGTCCAAAGAGTGATCCGATACAATATGGATTATCTCA
CACTGATGGCATCTCATGGACTCAGTGCGTTGGCCAATAATGTGGGATTT
CGAAAGCAATTGGTCCAACTGTTGTTGGAAGGAATTCGTCCATCGAATTT
GCGACAGCTAATGCGGCAGAAGACTCGAACCAGTGACGCCCGGAGTGATC
CTATTGCCTTTTTTGACCTTTTGGAAACATGGGCGCCATTGCAAGATGTG
TTTCACTCCGAGACCATCAAGACCGCAAAGTATATCAATGCTCGCACGGT
CCCTCCAAACAAGGTTTTGAGAGGAAGTCGAAGTGCTGGACCACGTCAGA
GGCCGGCCTATCCTCGAAAAGAAAACATCTCTTTTGGGAAGACTAATCGT
AAATGGTCTTGTCTGATCTGTGGAAAGACGAACCATTCTACGAAAGAACA
TCGCGGTGCTTCAAAGGAAGACATCGACAAGGCTTTTCAAAAGTACAGAG
ATGAAAAAGCGGTAAGCGAATATTGTGAAATTCCAATATCTAACTCGCGG
ATTGTAGAAAAAGAATCCGGGAACGTTTCAGAAGAGAGCCTAGCCACTCC
AAGGGATGGCCTAGAGGATGGTAGCCAGAATGCGTTTCCTATTAATCCTG