Gvermi13340.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13340.t1
Unique NameGvermi13340.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3351contigScGOVlb_3351:1..938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13340Gvermi13340Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3351 1..938 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13340.t1.CDS1Gvermi13340.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3351 1..938 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13340.t1.exon1Gvermi13340.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3351 1..938 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13340.t1.start1Gvermi13340.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3351 936..938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13340.t1Gvermi13340.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3351 1..938 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13340.t1 ID=Gvermi13340.t1|Name=Gvermi13340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MLHGEPLHTPCVSDTPLYLSYEDRSGSTSYMSLLEADAGVCFDPIDGEPP
TEASEADCKAQCLSLDECHTVLHVANGTCVLGGRPLGCPEGELVASHVES
NQYAEGFRPKRSTGDALALFHGKSNQECVTLCDTDPSCHEASTICGSTEQ
CVLRANQLDASETSCAAHRSSEHVFVNGRRAFLGDAKSAYCDRDVTKNNE
ADLVLDTFDTADQDVCIDLCLLRTNCKAIQTNPGPFGATPCTLLGFGSGS
DPFDTTLCEKSLEDVRDVIWQRDAEALEYVATFRDSSASNNAEKCNAKCR
QYPGAEYFRIFSG
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spliced messenger RNA

>Gvermi13340.t1 ID=Gvermi13340.t1|Name=Gvermi13340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=938bp|location=Sequence derived from alignment at ScGOVlb_3351:1..938- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCACGGAGAGCCTTTGCATACTCCTTGTGTTTCAGATACGCCTCT
ATACCTCTCGTACGAGGATCGTAGCGGTAGCACGTCATATATGTCGTTGC
TAGAAGCCGACGCCGGAGTCTGCTTTGACCCGATCGATGGCGAACCGCCC
ACGGAAGCAAGCGAAGCGGATTGCAAAGCTCAGTGTTTGAGCCTGGACGA
ATGTCACACGGTTTTGCACGTGGCAAATGGTACGTGTGTTCTTGGTGGGC
GTCCTCTTGGGTGCCCCGAAGGCGAACTAGTAGCTAGTCACGTGGAAAGT
AATCAGTACGCCGAGGGATTCCGCCCCAAAAGGTCTACTGGAGACGCGCT
TGCATTGTTTCACGGAAAGAGTAATCAGGAGTGTGTCACATTGTGCGATA
CGGATCCCTCTTGCCACGAGGCTTCCACGATTTGCGGCAGCACCGAGCAA
TGCGTACTGAGGGCAAACCAACTGGACGCCAGCGAGACTTCTTGTGCAGC
TCATCGTAGCAGCGAGCACGTGTTCGTGAATGGCAGGAGGGCTTTCCTCG
GCGACGCCAAGTCGGCTTATTGCGACCGGGACGTGACCAAGAACAACGAG
GCCGATCTCGTTCTTGATACATTTGACACCGCAGATCAGGACGTCTGTAT
CGATTTGTGCTTGCTGAGGACCAATTGTAAAGCCATCCAAACCAACCCTG
GCCCGTTCGGCGCGACACCATGCACGTTGCTTGGATTTGGGTCAGGCAGT
GATCCTTTTGACACCACGTTGTGCGAGAAGAGCTTGGAGGATGTGAGAGA
CGTCATCTGGCAGCGAGATGCTGAAGCCTTGGAGTACGTCGCAACATTCA
GAGACTCGAGCGCCAGCAACAACGCAGAGAAATGCAACGCAAAGTGTCGG
CAATATCCAGGGGCCGAATACTTTCGCATATTCTCTGG
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protein sequence of Gvermi13340.t1

>Gvermi13340.t1 ID=Gvermi13340.t1|Name=Gvermi13340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MLHGEPLHTPCVSDTPLYLSYEDRSGSTSYMSLLEADAGVCFDPIDGEPP
TEASEADCKAQCLSLDECHTVLHVANGTCVLGGRPLGCPEGELVASHVES
NQYAEGFRPKRSTGDALALFHGKSNQECVTLCDTDPSCHEASTICGSTEQ
CVLRANQLDASETSCAAHRSSEHVFVNGRRAFLGDAKSAYCDRDVTKNNE
ADLVLDTFDTADQDVCIDLCLLRTNCKAIQTNPGPFGATPCTLLGFGSGS
DPFDTTLCEKSLEDVRDVIWQRDAEALEYVATFRDSSASNNAEKCNAKCR
QYPGAEYFRIFSG
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mRNA from alignment at ScGOVlb_3351:1..938-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13340.t1 ID=Gvermi13340.t1|Name=Gvermi13340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=938bp|location=Sequence derived from alignment at ScGOVlb_3351:1..938- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCACGGAGAGCCTTTGCATACTCCTTGTGTTTCAGATACGCCTCT
ATACCTCTCGTACGAGGATCGTAGCGGTAGCACGTCATATATGTCGTTGC
TAGAAGCCGACGCCGGAGTCTGCTTTGACCCGATCGATGGCGAACCGCCC
ACGGAAGCAAGCGAAGCGGATTGCAAAGCTCAGTGTTTGAGCCTGGACGA
ATGTCACACGGTTTTGCACGTGGCAAATGGTACGTGTGTTCTTGGTGGGC
GTCCTCTTGGGTGCCCCGAAGGCGAACTAGTAGCTAGTCACGTGGAAAGT
AATCAGTACGCCGAGGGATTCCGCCCCAAAAGGTCTACTGGAGACGCGCT
TGCATTGTTTCACGGAAAGAGTAATCAGGAGTGTGTCACATTGTGCGATA
CGGATCCCTCTTGCCACGAGGCTTCCACGATTTGCGGCAGCACCGAGCAA
TGCGTACTGAGGGCAAACCAACTGGACGCCAGCGAGACTTCTTGTGCAGC
TCATCGTAGCAGCGAGCACGTGTTCGTGAATGGCAGGAGGGCTTTCCTCG
GCGACGCCAAGTCGGCTTATTGCGACCGGGACGTGACCAAGAACAACGAG
GCCGATCTCGTTCTTGATACATTTGACACCGCAGATCAGGACGTCTGTAT
CGATTTGTGCTTGCTGAGGACCAATTGTAAAGCCATCCAAACCAACCCTG
GCCCGTTCGGCGCGACACCATGCACGTTGCTTGGATTTGGGTCAGGCAGT
GATCCTTTTGACACCACGTTGTGCGAGAAGAGCTTGGAGGATGTGAGAGA
CGTCATCTGGCAGCGAGATGCTGAAGCCTTGGAGTACGTCGCAACATTCA
GAGACTCGAGCGCCAGCAACAACGCAGAGAAATGCAACGCAAAGTGTCGG
CAATATCCAGGGGCCGAATACTTTCGCATATTCTCTGG
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Coding sequence (CDS) from alignment at ScGOVlb_3351:1..938-

>Gvermi13340.t1 ID=Gvermi13340.t1|Name=Gvermi13340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=938bp|location=Sequence derived from alignment at ScGOVlb_3351:1..938- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTGCACGGAGAGCCTTTGCATACTCCTTGTGTTTCAGATACGCCTCT
ATACCTCTCGTACGAGGATCGTAGCGGTAGCACGTCATATATGTCGTTGC
TAGAAGCCGACGCCGGAGTCTGCTTTGACCCGATCGATGGCGAACCGCCC
ACGGAAGCAAGCGAAGCGGATTGCAAAGCTCAGTGTTTGAGCCTGGACGA
ATGTCACACGGTTTTGCACGTGGCAAATGGTACGTGTGTTCTTGGTGGGC
GTCCTCTTGGGTGCCCCGAAGGCGAACTAGTAGCTAGTCACGTGGAAAGT
AATCAGTACGCCGAGGGATTCCGCCCCAAAAGGTCTACTGGAGACGCGCT
TGCATTGTTTCACGGAAAGAGTAATCAGGAGTGTGTCACATTGTGCGATA
CGGATCCCTCTTGCCACGAGGCTTCCACGATTTGCGGCAGCACCGAGCAA
TGCGTACTGAGGGCAAACCAACTGGACGCCAGCGAGACTTCTTGTGCAGC
TCATCGTAGCAGCGAGCACGTGTTCGTGAATGGCAGGAGGGCTTTCCTCG
GCGACGCCAAGTCGGCTTATTGCGACCGGGACGTGACCAAGAACAACGAG
GCCGATCTCGTTCTTGATACATTTGACACCGCAGATCAGGACGTCTGTAT
CGATTTGTGCTTGCTGAGGACCAATTGTAAAGCCATCCAAACCAACCCTG
GCCCGTTCGGCGCGACACCATGCACGTTGCTTGGATTTGGGTCAGGCAGT
GATCCTTTTGACACCACGTTGTGCGAGAAGAGCTTGGAGGATGTGAGAGA
CGTCATCTGGCAGCGAGATGCTGAAGCCTTGGAGTACGTCGCAACATTCA
GAGACTCGAGCGCCAGCAACAACGCAGAGAAATGCAACGCAAAGTGTCGG
CAATATCCAGGGGCCGAATACTTTCGCATATTCTCTGG
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