Gvermi13274.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13274.t1
Unique NameGvermi13274.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1461contigScGOVlb_1461:1063..1773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13274Gvermi13274Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1461 1063..1773 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13274.t1.stop1Gvermi13274.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1461 1063..1065 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13274.t1.CDS1Gvermi13274.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1461 1063..1773 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13274.t1.exon1Gvermi13274.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1461 1063..1773 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13274.t1.start1Gvermi13274.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1461 1771..1773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13274.t1Gvermi13274.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1461 1063..1773 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13274.t1 ID=Gvermi13274.t1|Name=Gvermi13274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=237bp
MNRTTTYSAIGLSVVAVAAIIDAAFGFGAVEWLLDLRLTDGDQGMSDMVT
TDRDVKPVPLIALGLGVSVAAIWFLTTERRRAANGTSPPDSEERAGILSA
MLVVAVARGKTSRDEMLGTFQVVTGQRLEDVFVDLAMDRYEGMVDVDPRK
IKIEPVSSAIGRRRALGAAMLMAHPMRTVPAMQSLIANMADKIGATEDDC
RAVRNSIEDWNEDCREITEVPLVSLLRHRKLTLRPA*
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spliced messenger RNA

>Gvermi13274.t1 ID=Gvermi13274.t1|Name=Gvermi13274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=711bp|location=Sequence derived from alignment at ScGOVlb_1461:1063..1773- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCACCACCACCTATAGCGCCATTGGCCTTTCCGTCGTCGCAGT
TGCAGCGATCATCGATGCGGCCTTCGGTTTTGGCGCCGTAGAATGGCTGT
TGGATCTTCGCCTGACGGATGGGGATCAGGGTATGTCTGATATGGTCACG
ACCGACCGAGACGTGAAACCCGTTCCGCTGATTGCCCTTGGCCTTGGAGT
CAGCGTCGCGGCCATCTGGTTTTTGACAACCGAAAGGCGCCGCGCGGCCA
ATGGCACGTCCCCCCCGGACAGTGAAGAGCGCGCTGGCATACTGTCGGCC
ATGTTGGTGGTTGCTGTCGCACGGGGCAAGACATCTCGCGACGAGATGCT
GGGCACCTTCCAAGTCGTAACAGGACAACGGCTTGAGGACGTCTTTGTCG
ATCTTGCCATGGACCGATACGAAGGCATGGTTGATGTTGATCCGCGCAAG
ATCAAGATAGAACCCGTCTCGTCCGCTATTGGACGTCGTCGCGCACTTGG
TGCCGCCATGTTGATGGCCCATCCGATGCGCACCGTTCCGGCGATGCAAA
GCCTGATCGCGAATATGGCAGACAAAATCGGCGCGACCGAAGACGACTGC
CGTGCCGTGCGCAACTCGATCGAAGACTGGAACGAAGATTGCCGCGAGAT
TACCGAGGTGCCTTTGGTGTCTCTGTTGCGCCACCGAAAGCTGACGCTGC
GCCCCGCCTAG
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protein sequence of Gvermi13274.t1

>Gvermi13274.t1 ID=Gvermi13274.t1|Name=Gvermi13274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=237bp
MNRTTTYSAIGLSVVAVAAIIDAAFGFGAVEWLLDLRLTDGDQGMSDMVT
TDRDVKPVPLIALGLGVSVAAIWFLTTERRRAANGTSPPDSEERAGILSA
MLVVAVARGKTSRDEMLGTFQVVTGQRLEDVFVDLAMDRYEGMVDVDPRK
IKIEPVSSAIGRRRALGAAMLMAHPMRTVPAMQSLIANMADKIGATEDDC
RAVRNSIEDWNEDCREITEVPLVSLLRHRKLTLRPA*
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mRNA from alignment at ScGOVlb_1461:1063..1773-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13274.t1 ID=Gvermi13274.t1|Name=Gvermi13274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=711bp|location=Sequence derived from alignment at ScGOVlb_1461:1063..1773- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGCACCACCACCTATAGCGCCATTGGCCTTTCCGTCGTCGCAGT
TGCAGCGATCATCGATGCGGCCTTCGGTTTTGGCGCCGTAGAATGGCTGT
TGGATCTTCGCCTGACGGATGGGGATCAGGGTATGTCTGATATGGTCACG
ACCGACCGAGACGTGAAACCCGTTCCGCTGATTGCCCTTGGCCTTGGAGT
CAGCGTCGCGGCCATCTGGTTTTTGACAACCGAAAGGCGCCGCGCGGCCA
ATGGCACGTCCCCCCCGGACAGTGAAGAGCGCGCTGGCATACTGTCGGCC
ATGTTGGTGGTTGCTGTCGCACGGGGCAAGACATCTCGCGACGAGATGCT
GGGCACCTTCCAAGTCGTAACAGGACAACGGCTTGAGGACGTCTTTGTCG
ATCTTGCCATGGACCGATACGAAGGCATGGTTGATGTTGATCCGCGCAAG
ATCAAGATAGAACCCGTCTCGTCCGCTATTGGACGTCGTCGCGCACTTGG
TGCCGCCATGTTGATGGCCCATCCGATGCGCACCGTTCCGGCGATGCAAA
GCCTGATCGCGAATATGGCAGACAAAATCGGCGCGACCGAAGACGACTGC
CGTGCCGTGCGCAACTCGATCGAAGACTGGAACGAAGATTGCCGCGAGAT
TACCGAGGTGCCTTTGGTGTCTCTGTTGCGCCACCGAAAGCTGACGCTGC
GCCCCGCCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1461:1063..1773-

>Gvermi13274.t1 ID=Gvermi13274.t1|Name=Gvermi13274.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=711bp|location=Sequence derived from alignment at ScGOVlb_1461:1063..1773- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCGCACCACCACCTATAGCGCCATTGGCCTTTCCGTCGTCGCAGT
TGCAGCGATCATCGATGCGGCCTTCGGTTTTGGCGCCGTAGAATGGCTGT
TGGATCTTCGCCTGACGGATGGGGATCAGGGTATGTCTGATATGGTCACG
ACCGACCGAGACGTGAAACCCGTTCCGCTGATTGCCCTTGGCCTTGGAGT
CAGCGTCGCGGCCATCTGGTTTTTGACAACCGAAAGGCGCCGCGCGGCCA
ATGGCACGTCCCCCCCGGACAGTGAAGAGCGCGCTGGCATACTGTCGGCC
ATGTTGGTGGTTGCTGTCGCACGGGGCAAGACATCTCGCGACGAGATGCT
GGGCACCTTCCAAGTCGTAACAGGACAACGGCTTGAGGACGTCTTTGTCG
ATCTTGCCATGGACCGATACGAAGGCATGGTTGATGTTGATCCGCGCAAG
ATCAAGATAGAACCCGTCTCGTCCGCTATTGGACGTCGTCGCGCACTTGG
TGCCGCCATGTTGATGGCCCATCCGATGCGCACCGTTCCGGCGATGCAAA
GCCTGATCGCGAATATGGCAGACAAAATCGGCGCGACCGAAGACGACTGC
CGTGCCGTGCGCAACTCGATCGAAGACTGGAACGAAGATTGCCGCGAGAT
TACCGAGGTGCCTTTGGTGTCTCTGTTGCGCCACCGAAAGCTGACGCTGC
GCCCCGCCTAG
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