Gvermi13259.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13259.t1
Unique NameGvermi13259.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length128
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6345contigScGOVlb_6345:461..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog568076.XP_007824014.1
PFAMsRPE65
Max annot lvl4751|Fungi
KEGG rclassRC00912,RC01690
KEGG koko:K17842
KEGG ReactionR09782
KEGG Pathwayko00906,ko01100,map00906,map01100
Evalue2.63e-16
EggNOG OGsCOG3670@1|root,KOG1285@2759|Eukaryota,38DX7@33154|Opisthokonta,3NYJJ@4751|Fungi,3QNFB@4890|Ascomycota,21780@147550|Sordariomycetes,3TE2W@5125|Hypocreales,3G1E8@34397|Clavicipitaceae
EC1.13.11.59
DescriptionRetinal pigment epithelial membrane protein
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13259Gvermi13259Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6345 461..844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13259.t1.stop1Gvermi13259.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6345 461..463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13259.t1.CDS1Gvermi13259.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6345 461..844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13259.t1.exon1Gvermi13259.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6345 461..844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13259.t1.start1Gvermi13259.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_6345 842..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13259.t1Gvermi13259.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6345 461..844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13259.t1 ID=Gvermi13259.t1|Name=Gvermi13259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=128bp
MIAKHAGDFPVISPDNELSQHRFVYTTVNTDGISAAVVQKTDLKTGATKR
FGLQNCMFSELSFVPNPSGNAEDDGSLITVALNSATRKSTVIVLDARTFH
EVSRAELPIGMPLGIHTGIHSIESLSS*
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spliced messenger RNA

>Gvermi13259.t1 ID=Gvermi13259.t1|Name=Gvermi13259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp|location=Sequence derived from alignment at ScGOVlb_6345:461..844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCCAAGCATGCCGGTGATTTTCCTGTCATTTCACCGGATAATGA
ACTCTCGCAACATAGATTTGTGTACACTACTGTAAATACTGATGGTATTT
CTGCCGCAGTTGTGCAGAAAACCGACTTGAAAACAGGAGCGACAAAGCGC
TTTGGATTGCAAAATTGTATGTTTTCCGAGCTTTCGTTTGTTCCAAACCC
ATCAGGAAATGCTGAAGATGATGGCTCGTTGATCACAGTGGCTTTAAATT
CGGCAACTCGAAAATCCACAGTGATTGTCTTGGATGCACGCACATTTCAT
GAAGTCTCCAGAGCAGAGCTTCCGATAGGAATGCCGCTCGGAATCCATAC
CGGTATACATTCGATTGAAAGTTTGTCATCATAA
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protein sequence of Gvermi13259.t1

>Gvermi13259.t1 ID=Gvermi13259.t1|Name=Gvermi13259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=128bp
MIAKHAGDFPVISPDNELSQHRFVYTTVNTDGISAAVVQKTDLKTGATKR
FGLQNCMFSELSFVPNPSGNAEDDGSLITVALNSATRKSTVIVLDARTFH
EVSRAELPIGMPLGIHTGIHSIESLSS*
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mRNA from alignment at ScGOVlb_6345:461..844-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13259.t1 ID=Gvermi13259.t1|Name=Gvermi13259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=384bp|location=Sequence derived from alignment at ScGOVlb_6345:461..844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTGCCAAGCATGCCGGTGATTTTCCTGTCATTTCACCGGATAATGA
ACTCTCGCAACATAGATTTGTGTACACTACTGTAAATACTGATGGTATTT
CTGCCGCAGTTGTGCAGAAAACCGACTTGAAAACAGGAGCGACAAAGCGC
TTTGGATTGCAAAATTGTATGTTTTCCGAGCTTTCGTTTGTTCCAAACCC
ATCAGGAAATGCTGAAGATGATGGCTCGTTGATCACAGTGGCTTTAAATT
CGGCAACTCGAAAATCCACAGTGATTGTCTTGGATGCACGCACATTTCAT
GAAGTCTCCAGAGCAGAGCTTCCGATAGGAATGCCGCTCGGAATCCATAC
CGGTATACATTCGATTGAAAGTTTGTCATCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_6345:461..844-

>Gvermi13259.t1 ID=Gvermi13259.t1|Name=Gvermi13259.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=384bp|location=Sequence derived from alignment at ScGOVlb_6345:461..844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTGCCAAGCATGCCGGTGATTTTCCTGTCATTTCACCGGATAATGA
ACTCTCGCAACATAGATTTGTGTACACTACTGTAAATACTGATGGTATTT
CTGCCGCAGTTGTGCAGAAAACCGACTTGAAAACAGGAGCGACAAAGCGC
TTTGGATTGCAAAATTGTATGTTTTCCGAGCTTTCGTTTGTTCCAAACCC
ATCAGGAAATGCTGAAGATGATGGCTCGTTGATCACAGTGGCTTTAAATT
CGGCAACTCGAAAATCCACAGTGATTGTCTTGGATGCACGCACATTTCAT
GAAGTCTCCAGAGCAGAGCTTCCGATAGGAATGCCGCTCGGAATCCATAC
CGGTATACATTCGATTGAAAGTTTGTCATCATAA
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