Gvermi13241.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13241.t1
Unique NameGvermi13241.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_6400contigScGOVlb_6400:2..714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003288439.1
PFAMsCH,EFhand_Ca_insen,Spectrin
Max annot lvl554915|Amoebozoa
GOsGO:0003674,GO:0003779,GO:0005198,GO:0005200,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005884,GO:0005938,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0008092,GO:0008150,GO:0009267,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0015629,GO:0016043,GO:0016192,GO:0022607,GO:0030029,GO:0030036,GO:0030587,GO:0030674,GO:0031143,GO:0031252,GO:0031667,GO:0031668,GO:0031669,GO:0032502,GO:0033554,GO:0040011,GO:0042594,GO:0042995,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046872,GO:0048856,GO:0048870,GO:0050896,GO:0051015,GO:0051017,GO:0051179,GO:0051234,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0051764,GO:0060090,GO:0061572,GO:0070685,GO:0071496,GO:0071840,GO:0071944,GO:0090702,GO:0097435,GO:0098657,GO:0099080,GO:0099081,GO:0099120,GO:0099512,GO:0099513,GO:0099568,GO:0120025
Evalue1.5e-15
EggNOG OGsCOG5069@1|root,KOG0035@2759|Eukaryota,3X893@554915|Amoebozoa
DescriptionCAMSAP CH domain
COG categoryZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13241Gvermi13241Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_6400 2..714 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13241.t1.CDS1Gvermi13241.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_6400 2..714 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13241.t1.exon1Gvermi13241.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_6400 2..714 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13241.t1.stop1Gvermi13241.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_6400 712..714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13241.t1Gvermi13241.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_6400 2..714 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13241.t1 ID=Gvermi13241.t1|Name=Gvermi13241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=238bp
XWLEKQKQTLKDTSVELQVQLEHVQRCIRDDDAAAERLVSDLRKCDDACN
ARSLVNNPFTTVTLNDVVALVSQYKMSLQKKQALLEERILEQERAGLTEA
QMAEIHENFEYFDRDKGGCLNKREIKTCLQSLGEESTAADIKAIMEAHDK
DGSGTVSKDEFVELMKDRLGDTDTQEEIECGFNLLSLDNPVIRATQLENV
VNDKSFKDAHVTYLTTEMTPADDGYTFTEWNAAAFAR*
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spliced messenger RNA

>Gvermi13241.t1 ID=Gvermi13241.t1|Name=Gvermi13241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=713bp|location=Sequence derived from alignment at ScGOVlb_6400:2..714+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TGTGGCTTGAAAAGCAAAAACAGACGCTGAAGGACACGAGTGTAGAGCTA
CAGGTTCAGCTGGAGCACGTTCAACGCTGCATCCGCGACGACGACGCCGC
CGCCGAGCGTCTTGTCAGCGATCTGCGCAAGTGCGATGACGCCTGCAACG
CACGCTCGCTCGTCAACAATCCGTTTACGACGGTGACATTGAACGACGTC
GTTGCACTCGTTTCGCAGTATAAAATGTCGCTGCAAAAGAAACAGGCGCT
ACTTGAGGAGCGTATCCTGGAGCAGGAGCGTGCCGGCTTAACGGAGGCGC
AGATGGCCGAGATTCACGAGAATTTCGAGTACTTTGATCGCGACAAGGGC
GGTTGTCTCAATAAGCGTGAAATCAAGACGTGTCTGCAGTCGCTGGGTGA
AGAGTCGACGGCGGCCGACATCAAAGCCATCATGGAGGCTCACGACAAGG
ACGGAAGCGGCACCGTGAGCAAAGATGAGTTTGTCGAGCTGATGAAGGAT
CGTTTGGGCGACACGGACACTCAGGAGGAAATCGAGTGCGGCTTCAACTT
GCTGTCACTGGACAACCCGGTCATCCGCGCCACGCAGCTGGAAAACGTCG
TCAACGACAAATCGTTCAAGGATGCGCATGTGACGTACTTGACGACGGAG
ATGACGCCAGCCGACGACGGATACACATTCACAGAGTGGAACGCCGCCGC
ATTCGCGCGATGA
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protein sequence of Gvermi13241.t1

>Gvermi13241.t1 ID=Gvermi13241.t1|Name=Gvermi13241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=238bp
XWLEKQKQTLKDTSVELQVQLEHVQRCIRDDDAAAERLVSDLRKCDDACN
ARSLVNNPFTTVTLNDVVALVSQYKMSLQKKQALLEERILEQERAGLTEA
QMAEIHENFEYFDRDKGGCLNKREIKTCLQSLGEESTAADIKAIMEAHDK
DGSGTVSKDEFVELMKDRLGDTDTQEEIECGFNLLSLDNPVIRATQLENV
VNDKSFKDAHVTYLTTEMTPADDGYTFTEWNAAAFAR*
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mRNA from alignment at ScGOVlb_6400:2..714+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13241.t1 ID=Gvermi13241.t1|Name=Gvermi13241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=713bp|location=Sequence derived from alignment at ScGOVlb_6400:2..714+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGTGGCTTGAAAAGCAAAAACAGACGCTGAAGGACACGAGTGTAGAGCTA
CAGGTTCAGCTGGAGCACGTTCAACGCTGCATCCGCGACGACGACGCCGC
CGCCGAGCGTCTTGTCAGCGATCTGCGCAAGTGCGATGACGCCTGCAACG
CACGCTCGCTCGTCAACAATCCGTTTACGACGGTGACATTGAACGACGTC
GTTGCACTCGTTTCGCAGTATAAAATGTCGCTGCAAAAGAAACAGGCGCT
ACTTGAGGAGCGTATCCTGGAGCAGGAGCGTGCCGGCTTAACGGAGGCGC
AGATGGCCGAGATTCACGAGAATTTCGAGTACTTTGATCGCGACAAGGGC
GGTTGTCTCAATAAGCGTGAAATCAAGACGTGTCTGCAGTCGCTGGGTGA
AGAGTCGACGGCGGCCGACATCAAAGCCATCATGGAGGCTCACGACAAGG
ACGGAAGCGGCACCGTGAGCAAAGATGAGTTTGTCGAGCTGATGAAGGAT
CGTTTGGGCGACACGGACACTCAGGAGGAAATCGAGTGCGGCTTCAACTT
GCTGTCACTGGACAACCCGGTCATCCGCGCCACGCAGCTGGAAAACGTCG
TCAACGACAAATCGTTCAAGGATGCGCATGTGACGTACTTGACGACGGAG
ATGACGCCAGCCGACGACGGATACACATTCACAGAGTGGAACGCCGCCGC
ATTCGCGCGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_6400:2..714+

>Gvermi13241.t1 ID=Gvermi13241.t1|Name=Gvermi13241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=713bp|location=Sequence derived from alignment at ScGOVlb_6400:2..714+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGTGGCTTGAAAAGCAAAAACAGACGCTGAAGGACACGAGTGTAGAGCTA
CAGGTTCAGCTGGAGCACGTTCAACGCTGCATCCGCGACGACGACGCCGC
CGCCGAGCGTCTTGTCAGCGATCTGCGCAAGTGCGATGACGCCTGCAACG
CACGCTCGCTCGTCAACAATCCGTTTACGACGGTGACATTGAACGACGTC
GTTGCACTCGTTTCGCAGTATAAAATGTCGCTGCAAAAGAAACAGGCGCT
ACTTGAGGAGCGTATCCTGGAGCAGGAGCGTGCCGGCTTAACGGAGGCGC
AGATGGCCGAGATTCACGAGAATTTCGAGTACTTTGATCGCGACAAGGGC
GGTTGTCTCAATAAGCGTGAAATCAAGACGTGTCTGCAGTCGCTGGGTGA
AGAGTCGACGGCGGCCGACATCAAAGCCATCATGGAGGCTCACGACAAGG
ACGGAAGCGGCACCGTGAGCAAAGATGAGTTTGTCGAGCTGATGAAGGAT
CGTTTGGGCGACACGGACACTCAGGAGGAAATCGAGTGCGGCTTCAACTT
GCTGTCACTGGACAACCCGGTCATCCGCGCCACGCAGCTGGAAAACGTCG
TCAACGACAAATCGTTCAAGGATGCGCATGTGACGTACTTGACGACGGAG
ATGACGCCAGCCGACGACGGATACACATTCACAGAGTGGAACGCCGCCGC
ATTCGCGCGATGA
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