Gvermi1322.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1322.t1
Unique NameGvermi1322.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_601contigScGOVlb_601:1698..2735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatrdraft626
PFAMsCDC37_C,CDC37_M,CDC37_N
Max annot lvl2836|Bacillariophyta
KEGG koko:K09554
KEGG Pathwayko04151,map04151
Evalue1.36e-93
EggNOG OGsKOG2260@1|root,KOG2260@2759|Eukaryota,2XASM@2836|Bacillariophyta
DescriptionCdc37 C terminal domain
COG categoryD
BRITEko00000,ko00001,ko00536,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1322Gvermi1322Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_601 1698..2735 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1322.t1.stop1Gvermi1322.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_601 1698..1700 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1322.t1.CDS1Gvermi1322.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_601 1698..2735 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1322.t1.exon1Gvermi1322.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_601 1698..2735 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1322.t1.start1Gvermi1322.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_601 2733..2735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1322.t1Gvermi1322.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_601 1698..2735 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1322.t1 ID=Gvermi1322.t1|Name=Gvermi1322.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=346bp
MVAELKQLREANAERQAKLDDYEKNKKWNVDNMSQVKEERTLINKTAGKL
GYTESGFAVDPVETKPATAPPPKPATAAATATKPAAKPAAAAKTAPKPAK
PEAAAKNEAIPSVYGGAPVVGPQKEEIGAMLTYHEFTERHADQVEQFMAC
KTLEDSKNYLLEHGDVLLQENASNYLLLASLEDEMNGCREKMKLTARQSQ
IVTNIAELSKTVGTHPGNVIQPFFMRLGERVHLEEFLAGVSAFCDKIIQR
AAAKKVEMDAERAAAAAQEESSAGTDLHAVPREERLGPGGLDPLEVIETL
PPTIVEAFESRDVDQLREALMQLDPSDAEYHLKRCVDSGLWVAES*
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spliced messenger RNA

>Gvermi1322.t1 ID=Gvermi1322.t1|Name=Gvermi1322.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_601:1698..2735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGGAACTCAAGCAGCTCCGAGAAGCCAACGCGGAACGGCAGGC
GAAATTGGATGACTACGAAAAGAATAAAAAGTGGAATGTGGACAACATGT
CGCAGGTCAAGGAGGAGCGAACGCTCATCAACAAGACGGCCGGGAAACTG
GGTTACACGGAATCGGGCTTTGCCGTGGACCCTGTTGAAACGAAACCAGC
GACAGCACCGCCACCAAAACCAGCGACAGCAGCAGCAACAGCTACCAAAC
CAGCCGCTAAACCAGCTGCGGCGGCGAAAACGGCGCCCAAACCAGCAAAA
CCAGAAGCAGCAGCAAAAAACGAAGCGATTCCTTCTGTTTACGGCGGCGC
ACCCGTTGTTGGCCCCCAAAAGGAAGAAATTGGCGCCATGCTCACCTACC
ACGAATTCACGGAACGGCACGCGGACCAGGTGGAGCAATTCATGGCGTGC
AAAACGCTGGAGGACTCCAAAAACTATTTGCTCGAGCACGGCGACGTGCT
GCTGCAAGAGAACGCGTCCAATTACCTGCTGCTGGCGTCGCTCGAGGACG
AAATGAACGGGTGCCGCGAGAAAATGAAGCTGACGGCGCGGCAGTCGCAA
ATTGTGACCAACATTGCCGAACTCAGCAAGACGGTCGGAACGCACCCCGG
GAACGTGATTCAACCCTTTTTCATGCGATTGGGCGAGCGCGTGCACCTGG
AAGAATTCCTCGCGGGCGTGTCGGCCTTTTGTGACAAGATTATCCAGCGC
GCCGCCGCGAAAAAGGTGGAAATGGATGCCGAACGCGCTGCGGCTGCGGC
CCAGGAAGAGAGCAGCGCGGGGACGGATTTGCACGCTGTGCCGCGCGAGG
AACGCTTGGGACCGGGTGGACTGGATCCGCTGGAAGTGATTGAAACGCTG
CCGCCTACCATTGTGGAAGCGTTTGAATCACGAGATGTGGACCAGCTGCG
GGAGGCGCTCATGCAGTTGGATCCGTCGGATGCGGAGTACCACTTGAAAC
GCTGCGTTGATTCGGGTTTGTGGGTGGCAGAGTCGTAG
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protein sequence of Gvermi1322.t1

>Gvermi1322.t1 ID=Gvermi1322.t1|Name=Gvermi1322.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=346bp
MVAELKQLREANAERQAKLDDYEKNKKWNVDNMSQVKEERTLINKTAGKL
GYTESGFAVDPVETKPATAPPPKPATAAATATKPAAKPAAAAKTAPKPAK
PEAAAKNEAIPSVYGGAPVVGPQKEEIGAMLTYHEFTERHADQVEQFMAC
KTLEDSKNYLLEHGDVLLQENASNYLLLASLEDEMNGCREKMKLTARQSQ
IVTNIAELSKTVGTHPGNVIQPFFMRLGERVHLEEFLAGVSAFCDKIIQR
AAAKKVEMDAERAAAAAQEESSAGTDLHAVPREERLGPGGLDPLEVIETL
PPTIVEAFESRDVDQLREALMQLDPSDAEYHLKRCVDSGLWVAES*
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mRNA from alignment at ScGOVlb_601:1698..2735-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1322.t1 ID=Gvermi1322.t1|Name=Gvermi1322.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_601:1698..2735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCGGAACTCAAGCAGCTCCGAGAAGCCAACGCGGAACGGCAGGC
GAAATTGGATGACTACGAAAAGAATAAAAAGTGGAATGTGGACAACATGT
CGCAGGTCAAGGAGGAGCGAACGCTCATCAACAAGACGGCCGGGAAACTG
GGTTACACGGAATCGGGCTTTGCCGTGGACCCTGTTGAAACGAAACCAGC
GACAGCACCGCCACCAAAACCAGCGACAGCAGCAGCAACAGCTACCAAAC
CAGCCGCTAAACCAGCTGCGGCGGCGAAAACGGCGCCCAAACCAGCAAAA
CCAGAAGCAGCAGCAAAAAACGAAGCGATTCCTTCTGTTTACGGCGGCGC
ACCCGTTGTTGGCCCCCAAAAGGAAGAAATTGGCGCCATGCTCACCTACC
ACGAATTCACGGAACGGCACGCGGACCAGGTGGAGCAATTCATGGCGTGC
AAAACGCTGGAGGACTCCAAAAACTATTTGCTCGAGCACGGCGACGTGCT
GCTGCAAGAGAACGCGTCCAATTACCTGCTGCTGGCGTCGCTCGAGGACG
AAATGAACGGGTGCCGCGAGAAAATGAAGCTGACGGCGCGGCAGTCGCAA
ATTGTGACCAACATTGCCGAACTCAGCAAGACGGTCGGAACGCACCCCGG
GAACGTGATTCAACCCTTTTTCATGCGATTGGGCGAGCGCGTGCACCTGG
AAGAATTCCTCGCGGGCGTGTCGGCCTTTTGTGACAAGATTATCCAGCGC
GCCGCCGCGAAAAAGGTGGAAATGGATGCCGAACGCGCTGCGGCTGCGGC
CCAGGAAGAGAGCAGCGCGGGGACGGATTTGCACGCTGTGCCGCGCGAGG
AACGCTTGGGACCGGGTGGACTGGATCCGCTGGAAGTGATTGAAACGCTG
CCGCCTACCATTGTGGAAGCGTTTGAATCACGAGATGTGGACCAGCTGCG
GGAGGCGCTCATGCAGTTGGATCCGTCGGATGCGGAGTACCACTTGAAAC
GCTGCGTTGATTCGGGTTTGTGGGTGGCAGAGTCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_601:1698..2735-

>Gvermi1322.t1 ID=Gvermi1322.t1|Name=Gvermi1322.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1038bp|location=Sequence derived from alignment at ScGOVlb_601:1698..2735- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGCGGAACTCAAGCAGCTCCGAGAAGCCAACGCGGAACGGCAGGC
GAAATTGGATGACTACGAAAAGAATAAAAAGTGGAATGTGGACAACATGT
CGCAGGTCAAGGAGGAGCGAACGCTCATCAACAAGACGGCCGGGAAACTG
GGTTACACGGAATCGGGCTTTGCCGTGGACCCTGTTGAAACGAAACCAGC
GACAGCACCGCCACCAAAACCAGCGACAGCAGCAGCAACAGCTACCAAAC
CAGCCGCTAAACCAGCTGCGGCGGCGAAAACGGCGCCCAAACCAGCAAAA
CCAGAAGCAGCAGCAAAAAACGAAGCGATTCCTTCTGTTTACGGCGGCGC
ACCCGTTGTTGGCCCCCAAAAGGAAGAAATTGGCGCCATGCTCACCTACC
ACGAATTCACGGAACGGCACGCGGACCAGGTGGAGCAATTCATGGCGTGC
AAAACGCTGGAGGACTCCAAAAACTATTTGCTCGAGCACGGCGACGTGCT
GCTGCAAGAGAACGCGTCCAATTACCTGCTGCTGGCGTCGCTCGAGGACG
AAATGAACGGGTGCCGCGAGAAAATGAAGCTGACGGCGCGGCAGTCGCAA
ATTGTGACCAACATTGCCGAACTCAGCAAGACGGTCGGAACGCACCCCGG
GAACGTGATTCAACCCTTTTTCATGCGATTGGGCGAGCGCGTGCACCTGG
AAGAATTCCTCGCGGGCGTGTCGGCCTTTTGTGACAAGATTATCCAGCGC
GCCGCCGCGAAAAAGGTGGAAATGGATGCCGAACGCGCTGCGGCTGCGGC
CCAGGAAGAGAGCAGCGCGGGGACGGATTTGCACGCTGTGCCGCGCGAGG
AACGCTTGGGACCGGGTGGACTGGATCCGCTGGAAGTGATTGAAACGCTG
CCGCCTACCATTGTGGAAGCGTTTGAATCACGAGATGTGGACCAGCTGCG
GGAGGCGCTCATGCAGTTGGATCCGTCGGATGCGGAGTACCACTTGAAAC
GCTGCGTTGATTCGGGTTTGTGGGTGGCAGAGTCGTAG
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