Gvermi1321.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1321.t1
Unique NameGvermi1321.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_601contigScGOVlb_601:2..861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1321Gvermi1321Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_601 2..861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1321.t1.CDS1Gvermi1321.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_601 2..861 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1321.t1.exon1Gvermi1321.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_601 2..861 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1321.t1.stop1Gvermi1321.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_601 859..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1321.t1Gvermi1321.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_601 2..861 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1321.t1 ID=Gvermi1321.t1|Name=Gvermi1321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=287bp
XSCNLNRATIVQGIRSFVPDASHLSDADILAVFDRVTAAPVGEIQAGQND
NISDIESGSSSVNNPAGQGVAAAAAPSAAAAAAAPSAAAAAAPSAAAAGS
LDGFSGGSLGTFNAPEGASVGAANVNDFDEHSETTASAAFRVANEIVGGV
QPEEVFDFNPNHLPDPAAAVVQDEDGPSVVAPAVGVESSGDESTKEEKEE
SRSTAKKRNFATMSEGSGGKKADGDKKPAAKPSLKSGGSSKKKRGGKKAD
GDENTTADPTPKNNSGKKKDDDDGNDRKPAAKPSKK*
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spliced messenger RNA

>Gvermi1321.t1 ID=Gvermi1321.t1|Name=Gvermi1321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=860bp|location=Sequence derived from alignment at ScGOVlb_601:2..861+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
AATCTTGCAACTTGAATCGAGCCACAATCGTCCAAGGCATCAGATCTTTT
GTACCAGATGCCTCCCATTTATCCGACGCCGATATCCTCGCAGTTTTTGA
CCGGGTCACGGCAGCACCAGTCGGGGAGATCCAGGCAGGACAGAACGATA
ATATTTCAGATATTGAGAGCGGGTCTTCGAGCGTAAACAACCCGGCCGGT
CAAGGtgtagctgcggctgcggctccttctgcggccgcggcagctgcggc
tccttctgcggctgcggctgcggctccttctgcggctgcggctgGTAGTC
TAGACGGATTCAGTGGTGGCAGTCTAGGAACATTCAATGCGCCCGAGGGA
GCTTCGGTCGGTGCTGCCAACGTCAACGACTTTGATGAACACAGTGAAAC
AACGGCATCGGCTGCCTTTCGAGTAGCGAACGAAATTGTTGGAGGCGTCC
AGCCTGAAGAAGTTTTCGACTTCAACCCGAACCACCTCCCAGATCCGGCT
GCCGCCGTTGTCCAGGACGAAGATGGCCCGTCGGTAGTCGCACCAGCCGT
CGGGGTGGAGTCTTCAGGGGATGAGTCTACCAAAGAAGAGAAAGAAGAAT
CTCGTTCAACGGCCAAGAAACGCAACTTTGCTACCATGAGTGAAGGTAGC
GGCGGCAAGAAGGCCGACGGCGACAAGAAGCCTGCGGCGAAGCCCTCTCT
AAAGTCTGGAGGCTCATCAAAGAAAAAGCGCGGCGGAAAGAAGGCCGACG
GCGACGAGAATACTACGGCCGATCCAACTCCAAAGAACAACAGCGGAAAA
AAGAAGGACGACGATGACGGCAACGACCGTAAGCCTGCCGCCAAGCCGTC
CAAGAAGTAA
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protein sequence of Gvermi1321.t1

>Gvermi1321.t1 ID=Gvermi1321.t1|Name=Gvermi1321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
XSCNLNRATIVQGIRSFVPDASHLSDADILAVFDRVTAAPVGEIQAGQND
NISDIESGSSSVNNPAGQGVAAAAAPSAAAAAAAPSAAAAAAPSAAAAGS
LDGFSGGSLGTFNAPEGASVGAANVNDFDEHSETTASAAFRVANEIVGGV
QPEEVFDFNPNHLPDPAAAVVQDEDGPSVVAPAVGVESSGDESTKEEKEE
SRSTAKKRNFATMSEGSGGKKADGDKKPAAKPSLKSGGSSKKKRGGKKAD
GDENTTADPTPKNNSGKKKDDDDGNDRKPAAKPSKK*
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mRNA from alignment at ScGOVlb_601:2..861+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1321.t1 ID=Gvermi1321.t1|Name=Gvermi1321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=860bp|location=Sequence derived from alignment at ScGOVlb_601:2..861+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AATCTTGCAACTTGAATCGAGCCACAATCGTCCAAGGCATCAGATCTTTT
GTACCAGATGCCTCCCATTTATCCGACGCCGATATCCTCGCAGTTTTTGA
CCGGGTCACGGCAGCACCAGTCGGGGAGATCCAGGCAGGACAGAACGATA
ATATTTCAGATATTGAGAGCGGGTCTTCGAGCGTAAACAACCCGGCCGGT
CAAGGtgtagctgcggctgcggctccttctgcggccgcggcagctgcggc
tccttctgcggctgcggctgcggctccttctgcggctgcggctgGTAGTC
TAGACGGATTCAGTGGTGGCAGTCTAGGAACATTCAATGCGCCCGAGGGA
GCTTCGGTCGGTGCTGCCAACGTCAACGACTTTGATGAACACAGTGAAAC
AACGGCATCGGCTGCCTTTCGAGTAGCGAACGAAATTGTTGGAGGCGTCC
AGCCTGAAGAAGTTTTCGACTTCAACCCGAACCACCTCCCAGATCCGGCT
GCCGCCGTTGTCCAGGACGAAGATGGCCCGTCGGTAGTCGCACCAGCCGT
CGGGGTGGAGTCTTCAGGGGATGAGTCTACCAAAGAAGAGAAAGAAGAAT
CTCGTTCAACGGCCAAGAAACGCAACTTTGCTACCATGAGTGAAGGTAGC
GGCGGCAAGAAGGCCGACGGCGACAAGAAGCCTGCGGCGAAGCCCTCTCT
AAAGTCTGGAGGCTCATCAAAGAAAAAGCGCGGCGGAAAGAAGGCCGACG
GCGACGAGAATACTACGGCCGATCCAACTCCAAAGAACAACAGCGGAAAA
AAGAAGGACGACGATGACGGCAACGACCGTAAGCCTGCCGCCAAGCCGTC
CAAGAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_601:2..861+

>Gvermi1321.t1 ID=Gvermi1321.t1|Name=Gvermi1321.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=860bp|location=Sequence derived from alignment at ScGOVlb_601:2..861+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
AATCTTGCAACTTGAATCGAGCCACAATCGTCCAAGGCATCAGATCTTTT
GTACCAGATGCCTCCCATTTATCCGACGCCGATATCCTCGCAGTTTTTGA
CCGGGTCACGGCAGCACCAGTCGGGGAGATCCAGGCAGGACAGAACGATA
ATATTTCAGATATTGAGAGCGGGTCTTCGAGCGTAAACAACCCGGCCGGT
CAAGGtgtagctgcggctgcggctccttctgcggccgcggcagctgcggc
tccttctgcggctgcggctgcggctccttctgcggctgcggctgGTAGTC
TAGACGGATTCAGTGGTGGCAGTCTAGGAACATTCAATGCGCCCGAGGGA
GCTTCGGTCGGTGCTGCCAACGTCAACGACTTTGATGAACACAGTGAAAC
AACGGCATCGGCTGCCTTTCGAGTAGCGAACGAAATTGTTGGAGGCGTCC
AGCCTGAAGAAGTTTTCGACTTCAACCCGAACCACCTCCCAGATCCGGCT
GCCGCCGTTGTCCAGGACGAAGATGGCCCGTCGGTAGTCGCACCAGCCGT
CGGGGTGGAGTCTTCAGGGGATGAGTCTACCAAAGAAGAGAAAGAAGAAT
CTCGTTCAACGGCCAAGAAACGCAACTTTGCTACCATGAGTGAAGGTAGC
GGCGGCAAGAAGGCCGACGGCGACAAGAAGCCTGCGGCGAAGCCCTCTCT
AAAGTCTGGAGGCTCATCAAAGAAAAAGCGCGGCGGAAAGAAGGCCGACG
GCGACGAGAATACTACGGCCGATCCAACTCCAAAGAACAACAGCGGAAAA
AAGAAGGACGACGATGACGGCAACGACCGTAAGCCTGCCGCCAAGCCGTC
CAAGAAGTAA
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