Gvermi13201.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13201.t1
Unique NameGvermi13201.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_4231contigScGOVlb_4231:615..962 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1449350.OCH239_13130
PFAMsHTH_21,rve
Max annot lvl28211|Alphaproteobacteria
Evalue5.95e-38
EggNOG OGsCOG2801@1|root,COG2801@2|Bacteria,1MVXQ@1224|Proteobacteria,2TU72@28211|Alphaproteobacteria
DescriptionCOG2801 Transposase and inactivated derivatives
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13201Gvermi13201Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_4231 615..962 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13201.t1.start1Gvermi13201.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_4231 615..617 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13201.t1.CDS1Gvermi13201.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_4231 615..962 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13201.t1.exon1Gvermi13201.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_4231 615..962 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13201.t1.stop1Gvermi13201.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_4231 960..962 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13201.t1Gvermi13201.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_4231 615..962 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13201.t1 ID=Gvermi13201.t1|Name=Gvermi13201.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=116bp
MVDFIEEHRDEHGVEPICRVLPIAPSTYDEHRAKRLEPELGSARAKRDEE
LEVDIRRVWEESLGGVYGARKVWEQLLREGVDVARCTVERLMRKMGLQGA
CVQGYDHRGRRRGPP*
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spliced messenger RNA

>Gvermi13201.t1 ID=Gvermi13201.t1|Name=Gvermi13201.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp|location=Sequence derived from alignment at ScGOVlb_4231:615..962+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACTTCATCGAAGAGCACCGCGACGAACACGGGGTCGAGCCGAT
CTGCAGGGTCTTGCCGATCGCCCCGTCGACGTACGACGAGCACCGCGCCA
AGCGGTTGGAGCCCGAGCTGGGGAGTGCTCGGGCGAAGCGCGATGAGGAG
CTCGAGGTGGACATCAGGCGCGTCTGGGAGGAGAGCCTGGGCGGCGTGTA
CGGAGCCCGCAAAGTGTGGGAGCAGCTCCTGCGCGAGGGCGTCGATGTGG
CGCGCTGCACCGTCGAGAGGCTCATGCGGAAGATGGGCCTGCAGGGTGCC
TGCGTTCAAGGTTACGACCATCGCGGACGAAGACGCGGCCCGCCCTGA
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protein sequence of Gvermi13201.t1

>Gvermi13201.t1 ID=Gvermi13201.t1|Name=Gvermi13201.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=116bp
MVDFIEEHRDEHGVEPICRVLPIAPSTYDEHRAKRLEPELGSARAKRDEE
LEVDIRRVWEESLGGVYGARKVWEQLLREGVDVARCTVERLMRKMGLQGA
CVQGYDHRGRRRGPP*
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mRNA from alignment at ScGOVlb_4231:615..962+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13201.t1 ID=Gvermi13201.t1|Name=Gvermi13201.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=348bp|location=Sequence derived from alignment at ScGOVlb_4231:615..962+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGACTTCATCGAAGAGCACCGCGACGAACACGGGGTCGAGCCGAT
CTGCAGGGTCTTGCCGATCGCCCCGTCGACGTACGACGAGCACCGCGCCA
AGCGGTTGGAGCCCGAGCTGGGGAGTGCTCGGGCGAAGCGCGATGAGGAG
CTCGAGGTGGACATCAGGCGCGTCTGGGAGGAGAGCCTGGGCGGCGTGTA
CGGAGCCCGCAAAGTGTGGGAGCAGCTCCTGCGCGAGGGCGTCGATGTGG
CGCGCTGCACCGTCGAGAGGCTCATGCGGAAGATGGGCCTGCAGGGTGCC
TGCGTTCAAGGTTACGACCATCGCGGACGAAGACGCGGCCCGCCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_4231:615..962+

>Gvermi13201.t1 ID=Gvermi13201.t1|Name=Gvermi13201.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=348bp|location=Sequence derived from alignment at ScGOVlb_4231:615..962+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGACTTCATCGAAGAGCACCGCGACGAACACGGGGTCGAGCCGAT
CTGCAGGGTCTTGCCGATCGCCCCGTCGACGTACGACGAGCACCGCGCCA
AGCGGTTGGAGCCCGAGCTGGGGAGTGCTCGGGCGAAGCGCGATGAGGAG
CTCGAGGTGGACATCAGGCGCGTCTGGGAGGAGAGCCTGGGCGGCGTGTA
CGGAGCCCGCAAAGTGTGGGAGCAGCTCCTGCGCGAGGGCGTCGATGTGG
CGCGCTGCACCGTCGAGAGGCTCATGCGGAAGATGGGCCTGCAGGGTGCC
TGCGTTCAAGGTTACGACCATCGCGGACGAAGACGCGGCCCGCCCTGA
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