Gvermi1312.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi1312.t1
Unique Name	Gvermi1312.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	280

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_4738	contig	ScGOVlb_4738:68..907 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7244.FBpp0227434
Preferred name	dnajc16
PFAMs	DnaJ,Thioredoxin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K09536
Evalue	4.04e-10
EggNOG OGs	COG0484@1\|root,KOG0714@2759\|Eukaryota,3AMW7@33154\|Opisthokonta,3C11V@33208\|Metazoa,3DHW0@33213\|Bilateria,41V7J@6656\|Arthropoda,3SHMH@50557\|Insecta,44XD1@7147\|Diptera,45ZM8@7214\|Drosophilidae
Description	It is involved in the biological process described with cell redox homeostasis
COG category	O
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi1312	Gvermi1312	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_4738 68..907 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1312.t1.start1	Gvermi1312.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_4738 68..70 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1312.t1.CDS1	Gvermi1312.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_4738 68..907 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1312.t1.exon1	Gvermi1312.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_4738 68..907 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1312.t1.stop1	Gvermi1312.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_4738 905..907 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi1312.t1	Gvermi1312.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_4738 68..907 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_4738:68..907+
coding sequence from alignment at ScGOVlb_4738:68..907+

mRNA sequence

>Gvermi1312.t1 ID=Gvermi1312.t1|Name=Gvermi1312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=280bp
MQDTMYLARHVFYQLVQSYMKLSELAKEVYAFLGFCLLLSLALALVISSS
LTTLAIRFPVTYRVFVFLWFVLSAVFKPQFEALMKSVGPVGCLAYWIAFV
CVTVIPIFNRLPSRMAGFIIQELCAFSAPLIPFAFLGWAMWLKSIGKSKP
VGHWMSSILFSLLAMAIQFHFCPDELRDPTHWYGWYLYAFLFGRNADNDA
RKDEAANDEEKETANAASPPFPPKGDAYKTLGVGRLASQQEIKRAFRELA
KAWHPDKCDHPEATEAMKRINAAYRELRL*

spliced messenger RNA

>Gvermi1312.t1 ID=Gvermi1312.t1|Name=Gvermi1312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_4738:68..907+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGACACTATGTATTTGGCGCGCCACGTATTTTACCAGCTTGTCCA
GAGCTACATGAAGTTATCTGAGCTTGCAAAAGAAGTTTATGCTTTTCTGG
GGTTCTGCTTGCTGCTTTCCTTGGCTCTGGCGTTGGTGATCAGTTCTTCT
CTGACCACGCTTGCTATTCGTTTCCCAGTCACCTATCGAGTGTTCGTTTT
TCTCTGGTTCGTACTCAGCGCTGTTTTCAAGCCCCAGTTTGAGGCCCTTA
TGAAGTCCGTCGGTCCGGTTGGCTGCTTGGCATATTGGATCGCTTTCGTT
TGCGTTACAGTCATTCCGATTTTCAACAGGCTTCCGTCAAGAATGGCTGG
CTTCATCATTCAAGAACTGTGTGCATTTTCTGCACCATTGATTCCTTTTG
CTTTTTTGGGCTGGGCAATGTGGCTGAAGAGTATTGGAAAGAGTAAGCCT
GTTGGTCATTGGATGTCCTCCATATTGTTCAGTTTATTGGCGATGGCAAT
TCAATTCCACTTCTGTCCAGACGAACTCCGCGACCCGACTCATTGGTATG
GGTGGTACTTATACGCCTTTCTCTTTGGACGCAACGCAGACAACGATGCG
CGCAAAGACGAAGCCGCCAACGATGAAGAAAAGGAAACGGCCAATGCCGC
TTCTCCTCCTTTTCCTCCGAAAGGAGACGCGTACAAGACTTTAGGGGTGG
GGCGCTTAGCAAGCCAACAGGAGATCAAGCGAGCATTCCGTGAACTAGCC
AAGGCCTGGCATCCAGACAAATGCGATCACCCAGAGGCTACCGAGGCCAT
GAAGCGGATCAATGCAGCCTACAGGGAATTACGTTTGTAG

protein sequence of Gvermi1312.t1

>Gvermi1312.t1 ID=Gvermi1312.t1|Name=Gvermi1312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=280bp
MQDTMYLARHVFYQLVQSYMKLSELAKEVYAFLGFCLLLSLALALVISSS
LTTLAIRFPVTYRVFVFLWFVLSAVFKPQFEALMKSVGPVGCLAYWIAFV
CVTVIPIFNRLPSRMAGFIIQELCAFSAPLIPFAFLGWAMWLKSIGKSKP
VGHWMSSILFSLLAMAIQFHFCPDELRDPTHWYGWYLYAFLFGRNADNDA
RKDEAANDEEKETANAASPPFPPKGDAYKTLGVGRLASQQEIKRAFRELA
KAWHPDKCDHPEATEAMKRINAAYRELRL*

mRNA from alignment at ScGOVlb_4738:68..907+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi1312.t1 ID=Gvermi1312.t1|Name=Gvermi1312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=840bp|location=Sequence derived from alignment at ScGOVlb_4738:68..907+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGACACTATGTATTTGGCGCGCCACGTATTTTACCAGCTTGTCCA
GAGCTACATGAAGTTATCTGAGCTTGCAAAAGAAGTTTATGCTTTTCTGG
GGTTCTGCTTGCTGCTTTCCTTGGCTCTGGCGTTGGTGATCAGTTCTTCT
CTGACCACGCTTGCTATTCGTTTCCCAGTCACCTATCGAGTGTTCGTTTT
TCTCTGGTTCGTACTCAGCGCTGTTTTCAAGCCCCAGTTTGAGGCCCTTA
TGAAGTCCGTCGGTCCGGTTGGCTGCTTGGCATATTGGATCGCTTTCGTT
TGCGTTACAGTCATTCCGATTTTCAACAGGCTTCCGTCAAGAATGGCTGG
CTTCATCATTCAAGAACTGTGTGCATTTTCTGCACCATTGATTCCTTTTG
CTTTTTTGGGCTGGGCAATGTGGCTGAAGAGTATTGGAAAGAGTAAGCCT
GTTGGTCATTGGATGTCCTCCATATTGTTCAGTTTATTGGCGATGGCAAT
TCAATTCCACTTCTGTCCAGACGAACTCCGCGACCCGACTCATTGGTATG
GGTGGTACTTATACGCCTTTCTCTTTGGACGCAACGCAGACAACGATGCG
CGCAAAGACGAAGCCGCCAACGATGAAGAAAAGGAAACGGCCAATGCCGC
TTCTCCTCCTTTTCCTCCGAAAGGAGACGCGTACAAGACTTTAGGGGTGG
GGCGCTTAGCAAGCCAACAGGAGATCAAGCGAGCATTCCGTGAACTAGCC
AAGGCCTGGCATCCAGACAAATGCGATCACCCAGAGGCTACCGAGGCCAT
GAAGCGGATCAATGCAGCCTACAGGGAATTACGTTTGTAG

Coding sequence (CDS) from alignment at ScGOVlb_4738:68..907+

>Gvermi1312.t1 ID=Gvermi1312.t1|Name=Gvermi1312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=840bp|location=Sequence derived from alignment at ScGOVlb_4738:68..907+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGGACACTATGTATTTGGCGCGCCACGTATTTTACCAGCTTGTCCA
GAGCTACATGAAGTTATCTGAGCTTGCAAAAGAAGTTTATGCTTTTCTGG
GGTTCTGCTTGCTGCTTTCCTTGGCTCTGGCGTTGGTGATCAGTTCTTCT
CTGACCACGCTTGCTATTCGTTTCCCAGTCACCTATCGAGTGTTCGTTTT
TCTCTGGTTCGTACTCAGCGCTGTTTTCAAGCCCCAGTTTGAGGCCCTTA
TGAAGTCCGTCGGTCCGGTTGGCTGCTTGGCATATTGGATCGCTTTCGTT
TGCGTTACAGTCATTCCGATTTTCAACAGGCTTCCGTCAAGAATGGCTGG
CTTCATCATTCAAGAACTGTGTGCATTTTCTGCACCATTGATTCCTTTTG
CTTTTTTGGGCTGGGCAATGTGGCTGAAGAGTATTGGAAAGAGTAAGCCT
GTTGGTCATTGGATGTCCTCCATATTGTTCAGTTTATTGGCGATGGCAAT
TCAATTCCACTTCTGTCCAGACGAACTCCGCGACCCGACTCATTGGTATG
GGTGGTACTTATACGCCTTTCTCTTTGGACGCAACGCAGACAACGATGCG
CGCAAAGACGAAGCCGCCAACGATGAAGAAAAGGAAACGGCCAATGCCGC
TTCTCCTCCTTTTCCTCCGAAAGGAGACGCGTACAAGACTTTAGGGGTGG
GGCGCTTAGCAAGCCAACAGGAGATCAAGCGAGCATTCCGTGAACTAGCC
AAGGCCTGGCATCCAGACAAATGCGATCACCCAGAGGCTACCGAGGCCAT
GAAGCGGATCAATGCAGCCTACAGGGAATTACGTTTGTAG