Gvermi13099.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13099.t1
Unique NameGvermi13099.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length78
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_13899contigScGOVlb_13899:1..232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1336233.JAEH01000001_gene649
PFAMsAlkyl_sulf_C,Alkyl_sulf_dimr,Lactamase_B
Max annot lvl1236|Gammaproteobacteria
Evalue1.15e-22
EggNOG OGsCOG2015@1|root,COG2015@2|Bacteria,1MU82@1224|Proteobacteria,1RMHR@1236|Gammaproteobacteria,2Q8XE@267890|Shewanellaceae
DescriptionPFAM beta-lactamase domain protein
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13099Gvermi13099Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_13899 1..232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13099.t1.CDS1Gvermi13099.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_13899 1..232 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13099.t1.exon1Gvermi13099.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_13899 1..232 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13099.t1.start1Gvermi13099.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_13899 230..232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13099.t1Gvermi13099.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_13899 1..232 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13099.t1 ID=Gvermi13099.t1|Name=Gvermi13099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=78bp
MYGSLLEKSAKGSVCAGLGMTTSNGSTGLLKPNKIISDEYETMDIDGINV
EFQFTPGTEAPTEMNTWFIDWDVLWMAX
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spliced messenger RNA

>Gvermi13099.t1 ID=Gvermi13099.t1|Name=Gvermi13099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=232bp|location=Sequence derived from alignment at ScGOVlb_13899:1..232- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGGATCTCTGCTGGAAAAGTCTGCAAAAGGATCCGTGTGCGCAGG
GCTTGGCATGACCACATCAAATGGAAGTACTGGTCTTTTGAAACCGAACA
AGATCATTTCTGATGAATATGAAACAATGGACATTGACGGAATCAACGTA
GAATTCCAGTTTACTCCAGGAACTGAAGCTCCGACCGAAATGAATACATG
GTTTATAGATTGGGATGTGCTTTGGATGGCCG
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protein sequence of Gvermi13099.t1

>Gvermi13099.t1 ID=Gvermi13099.t1|Name=Gvermi13099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=78bp
MYGSLLEKSAKGSVCAGLGMTTSNGSTGLLKPNKIISDEYETMDIDGINV
EFQFTPGTEAPTEMNTWFIDWDVLWMAX
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mRNA from alignment at ScGOVlb_13899:1..232-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13099.t1 ID=Gvermi13099.t1|Name=Gvermi13099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=232bp|location=Sequence derived from alignment at ScGOVlb_13899:1..232- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGGATCTCTGCTGGAAAAGTCTGCAAAAGGATCCGTGTGCGCAGG
GCTTGGCATGACCACATCAAATGGAAGTACTGGTCTTTTGAAACCGAACA
AGATCATTTCTGATGAATATGAAACAATGGACATTGACGGAATCAACGTA
GAATTCCAGTTTACTCCAGGAACTGAAGCTCCGACCGAAATGAATACATG
GTTTATAGATTGGGATGTGCTTTGGATGGCCG
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Coding sequence (CDS) from alignment at ScGOVlb_13899:1..232-

>Gvermi13099.t1 ID=Gvermi13099.t1|Name=Gvermi13099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=232bp|location=Sequence derived from alignment at ScGOVlb_13899:1..232- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACGGATCTCTGCTGGAAAAGTCTGCAAAAGGATCCGTGTGCGCAGG
GCTTGGCATGACCACATCAAATGGAAGTACTGGTCTTTTGAAACCGAACA
AGATCATTTCTGATGAATATGAAACAATGGACATTGACGGAATCAACGTA
GAATTCCAGTTTACTCCAGGAACTGAAGCTCCGACCGAAATGAATACATG
GTTTATAGATTGGGATGTGCTTTGGATGGCCG
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