Gvermi13080.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13080.t1
Unique NameGvermi13080.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length571
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_392contigScGOVlb_392:2..1886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13080Gvermi13080Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_392 2..1886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13080.t1Gvermi13080.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_392 2..1886 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13080.t1.CDS1Gvermi13080.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_392 2..95 +
Gvermi13080.t1.CDS2Gvermi13080.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_392 268..1886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13080.t1.exon1Gvermi13080.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_392 2..95 +
Gvermi13080.t1.exon2Gvermi13080.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_392 268..1886 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13080.t1.intron1Gvermi13080.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_392 96..267 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13080.t1.stop1Gvermi13080.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_392 1884..1886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13080.t1 ID=Gvermi13080.t1|Name=Gvermi13080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=571bp
QLREKEKQLREKEKQLREKENLLLQQQQQQDAMQRSGMVFLSDFVKCPLR
ILNQTDSTAHTKTGYKPAKFTEVGDVPSVEMPADFWGQLIRYDPNHRVFR
SESHVTHFNLELIQTVMKGLSIDCTVAPQIQNMDIHPDLSFFFGNNILQA
LNWEDKKPIGNEMWSNNSAVAGQAFEQLMLTQMAVGGAAYGIQSTYNGFR
LISTCDWRNHPKLNSSSSTVLQQSTTTPDKSTPTAALEENTFSPPTKKAN
GKAKKSSSKVANFPKIEVEPNAPADQTKTTRITSLFLEREFFVSRVYELG
TEGEVDMEIKNKEVVELICAALLLAQESTMVPKANLREVPFKGICREFKL
GRDPKIFPSTVLVEGGIKFDRCPTAQHMNFSSLTQVGRGATSVCCLAIAG
DASVCALKIFREKQMKEAAQSELKNWQTIYCEDKKWSFMRVAVVADTVIL
VLPFFTVPGSKEERARFLEGKTPKDTQLYKALDFFASRGYTHDDLKWHHV
GSFTSETKKHRLDTNDKNLTQTNTFLLDLGKITRNDVLQTDSAKRRLWVE
KQFKDMKSRHLGEMQSGMSD*
back to top

spliced messenger RNA

>Gvermi13080.t1 ID=Gvermi13080.t1|Name=Gvermi13080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at ScGOVlb_392:2..1886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CAGCTACGAGAAAAGGAGAAGCAGCTACGAGAAAAGGAGAAGCAGCTACG
AGAAAAGGAGAACCTTTTGTTgcagcagcagcagcagcaAGATGCTATGC
AGCGATCGGGAATGGTGTTCCTCTCTGATTTTGTCAAGTGCCCTCTGCGT
ATTCTCAACCAGACAGACTCCACCGCGCACACCAAAACAGGGTACAAACC
GGCAAAGTTTACCGAGGTGGGGGATGTACCTTCGGTAGAGATGCCCGCCG
ACTTCTGGGGGCAACTGATTCGTTACGATCCCAACCACCGAGTATTCCGT
TCGGAAAGCCATGTTACTCATTTCAATTTGGAGCTGATCCAAACTGTTAT
GAAAGGGCTCAGTATTGATTGCACAGTTGCTCCGCAAATTCAAAACATGG
ATATCCATCCTGATTTGTCCTTCTTCTTTGGAAATAACATACTGCAAGCT
CTGAACTGGGAAGACAAGAAGCCGATCGGAAACGAGATGTGGAGCAATAA
TTCAGCTGTGGCCGGCCAGGCCTTTGAGCAGTTGATGCTTACCCAGATGG
CTGTTGGTGGGGCAGCATATGGAATCCAAAGCACCTACAACGGATTCAGG
CTTATCTCTACATGTGACTGGAGAAACCATCCCAAACTCAATTCATCATC
ATCTACAGTTTTGCAGCAAAGCACGACAACTCCTGACAAAAGTACCCCTA
CAGCTGCCTTAGAAGAGAACACATTTTCCCCACCCACCAAAAAGGCCAAT
GGCAAGGCCAAGAAATCTTCCTCAAAGGTAGCAAATTTTCCAAAAATTGA
GGTGGAGCCAAATGCTCCCGCGGACCAGACCAAGACGACACGAATCACAT
CCCTTTTCTTAGAGCGAGAGTTCTTCGTCTCCAGGGTGTATGAACTTGGC
ACGGAGGGCGAGGTTGATATGGAAATTAAGAACAAGGAGGTCGTTGAATT
GATTTGTGCGGCCTTGCTGCTCGCGCAAGAGTCAACAATGGTTCCCAAGG
CAAACCTCCGCGAGGTTCCTTTCAAAGGCATTTGCCGAGAATTCAAGCTT
GGAAGAGATCCAAAAATCTTCCCTTCTACTGTTCTGGTTGAAGGTGGTAT
CAAGTTTGATCGATGCCCCACGGCACAGCACATGAATTTTTCGTCACTCA
CTCAGGTGGGAAGAGGAGCAACGTCGGTGTGTTGTCTTGCCATTGCTGGG
GACGCTTCTGTGTGCGCACTCAAGATATTTCGGGAGAAACAAATGAAAGA
AGCAGCACAGAGCGAACTCAAGAACTGGCAAACGATCTACTGTGAGGACA
AGAAATGGTCCTTCATGCGTGTGGCGGTGGTTGCTGACACCGTCATTCTT
GTGCTCCCATTTTTTACTGTGCCGGGCAGCAAAGAAGAACGTGCACGTTT
TCTGGAGGGAAAGACTCCTAAAGATACTCAACTCTACAAGGCACTGGACT
TTTTTGCTTCGAGAGGTTACACTCACGACGACTTGAAATGGCATCATGTT
GGGAGCTTCACATCCGAGACGAAGAAGCATCGGCTGGATACAAATGATAA
AAATCTCACTCAGACAAATACTTTTCTGCTGGATCTTGGAAAGATCACCA
GGAACGATGTCTTGCAGACGGATAGTGCCAAACGGAGACTTTGGGTGGAG
AAACAATTCAAAGATATGAAATCTCGTCACCTCGGGGAAATGCAGTCTGG
AATGTCAGATTGA
back to top

protein sequence of Gvermi13080.t1

>Gvermi13080.t1 ID=Gvermi13080.t1|Name=Gvermi13080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=571bp
QLREKEKQLREKEKQLREKENLLLQQQQQQDAMQRSGMVFLSDFVKCPLR
ILNQTDSTAHTKTGYKPAKFTEVGDVPSVEMPADFWGQLIRYDPNHRVFR
SESHVTHFNLELIQTVMKGLSIDCTVAPQIQNMDIHPDLSFFFGNNILQA
LNWEDKKPIGNEMWSNNSAVAGQAFEQLMLTQMAVGGAAYGIQSTYNGFR
LISTCDWRNHPKLNSSSSTVLQQSTTTPDKSTPTAALEENTFSPPTKKAN
GKAKKSSSKVANFPKIEVEPNAPADQTKTTRITSLFLEREFFVSRVYELG
TEGEVDMEIKNKEVVELICAALLLAQESTMVPKANLREVPFKGICREFKL
GRDPKIFPSTVLVEGGIKFDRCPTAQHMNFSSLTQVGRGATSVCCLAIAG
DASVCALKIFREKQMKEAAQSELKNWQTIYCEDKKWSFMRVAVVADTVIL
VLPFFTVPGSKEERARFLEGKTPKDTQLYKALDFFASRGYTHDDLKWHHV
GSFTSETKKHRLDTNDKNLTQTNTFLLDLGKITRNDVLQTDSAKRRLWVE
KQFKDMKSRHLGEMQSGMSD*
back to top

mRNA from alignment at ScGOVlb_392:2..1886+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13080.t1 ID=Gvermi13080.t1|Name=Gvermi13080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1885bp|location=Sequence derived from alignment at ScGOVlb_392:2..1886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CAGCTACGAGAAAAGGAGAAGCAGCTACGAGAAAAGGAGAAGCAGCTACG
AGAAAAGGAGAACCTTTTGTTgcagcagcagcagcagcaAGATGGTAAGT
TGCGCTGTTGTTGTTTTTGTATTCTCGTATTCAAATGTTGCTTCAAATAC
GGGAATTTTCAAGTATTTCTTGGAAAACGAAAATGATAGTCGTTAACCGT
GTCTTACACCGCTTCTATTTCTTTTGTTTTTTGCTTCGCTCGTTCTCCTT
TTCTCACATCTCAAAGCTATGCAGCGATCGGGAATGGTGTTCCTCTCTGA
TTTTGTCAAGTGCCCTCTGCGTATTCTCAACCAGACAGACTCCACCGCGC
ACACCAAAACAGGGTACAAACCGGCAAAGTTTACCGAGGTGGGGGATGTA
CCTTCGGTAGAGATGCCCGCCGACTTCTGGGGGCAACTGATTCGTTACGA
TCCCAACCACCGAGTATTCCGTTCGGAAAGCCATGTTACTCATTTCAATT
TGGAGCTGATCCAAACTGTTATGAAAGGGCTCAGTATTGATTGCACAGTT
GCTCCGCAAATTCAAAACATGGATATCCATCCTGATTTGTCCTTCTTCTT
TGGAAATAACATACTGCAAGCTCTGAACTGGGAAGACAAGAAGCCGATCG
GAAACGAGATGTGGAGCAATAATTCAGCTGTGGCCGGCCAGGCCTTTGAG
CAGTTGATGCTTACCCAGATGGCTGTTGGTGGGGCAGCATATGGAATCCA
AAGCACCTACAACGGATTCAGGCTTATCTCTACATGTGACTGGAGAAACC
ATCCCAAACTCAATTCATCATCATCTACAGTTTTGCAGCAAAGCACGACA
ACTCCTGACAAAAGTACCCCTACAGCTGCCTTAGAAGAGAACACATTTTC
CCCACCCACCAAAAAGGCCAATGGCAAGGCCAAGAAATCTTCCTCAAAGG
TAGCAAATTTTCCAAAAATTGAGGTGGAGCCAAATGCTCCCGCGGACCAG
ACCAAGACGACACGAATCACATCCCTTTTCTTAGAGCGAGAGTTCTTCGT
CTCCAGGGTGTATGAACTTGGCACGGAGGGCGAGGTTGATATGGAAATTA
AGAACAAGGAGGTCGTTGAATTGATTTGTGCGGCCTTGCTGCTCGCGCAA
GAGTCAACAATGGTTCCCAAGGCAAACCTCCGCGAGGTTCCTTTCAAAGG
CATTTGCCGAGAATTCAAGCTTGGAAGAGATCCAAAAATCTTCCCTTCTA
CTGTTCTGGTTGAAGGTGGTATCAAGTTTGATCGATGCCCCACGGCACAG
CACATGAATTTTTCGTCACTCACTCAGGTGGGAAGAGGAGCAACGTCGGT
GTGTTGTCTTGCCATTGCTGGGGACGCTTCTGTGTGCGCACTCAAGATAT
TTCGGGAGAAACAAATGAAAGAAGCAGCACAGAGCGAACTCAAGAACTGG
CAAACGATCTACTGTGAGGACAAGAAATGGTCCTTCATGCGTGTGGCGGT
GGTTGCTGACACCGTCATTCTTGTGCTCCCATTTTTTACTGTGCCGGGCA
GCAAAGAAGAACGTGCACGTTTTCTGGAGGGAAAGACTCCTAAAGATACT
CAACTCTACAAGGCACTGGACTTTTTTGCTTCGAGAGGTTACACTCACGA
CGACTTGAAATGGCATCATGTTGGGAGCTTCACATCCGAGACGAAGAAGC
ATCGGCTGGATACAAATGATAAAAATCTCACTCAGACAAATACTTTTCTG
CTGGATCTTGGAAAGATCACCAGGAACGATGTCTTGCAGACGGATAGTGC
CAAACGGAGACTTTGGGTGGAGAAACAATTCAAAGATATGAAATCTCGTC
ACCTCGGGGAAATGCAGTCTGGAATGTCAGATTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_392:2..1886+

>Gvermi13080.t1 ID=Gvermi13080.t1|Name=Gvermi13080.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1713bp|location=Sequence derived from alignment at ScGOVlb_392:2..1886+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CAGCTACGAGAAAAGGAGAAGCAGCTACGAGAAAAGGAGAAGCAGCTACG
AGAAAAGGAGAACCTTTTGTTgcagcagcagcagcagcaAGATGCTATGC
AGCGATCGGGAATGGTGTTCCTCTCTGATTTTGTCAAGTGCCCTCTGCGT
ATTCTCAACCAGACAGACTCCACCGCGCACACCAAAACAGGGTACAAACC
GGCAAAGTTTACCGAGGTGGGGGATGTACCTTCGGTAGAGATGCCCGCCG
ACTTCTGGGGGCAACTGATTCGTTACGATCCCAACCACCGAGTATTCCGT
TCGGAAAGCCATGTTACTCATTTCAATTTGGAGCTGATCCAAACTGTTAT
GAAAGGGCTCAGTATTGATTGCACAGTTGCTCCGCAAATTCAAAACATGG
ATATCCATCCTGATTTGTCCTTCTTCTTTGGAAATAACATACTGCAAGCT
CTGAACTGGGAAGACAAGAAGCCGATCGGAAACGAGATGTGGAGCAATAA
TTCAGCTGTGGCCGGCCAGGCCTTTGAGCAGTTGATGCTTACCCAGATGG
CTGTTGGTGGGGCAGCATATGGAATCCAAAGCACCTACAACGGATTCAGG
CTTATCTCTACATGTGACTGGAGAAACCATCCCAAACTCAATTCATCATC
ATCTACAGTTTTGCAGCAAAGCACGACAACTCCTGACAAAAGTACCCCTA
CAGCTGCCTTAGAAGAGAACACATTTTCCCCACCCACCAAAAAGGCCAAT
GGCAAGGCCAAGAAATCTTCCTCAAAGGTAGCAAATTTTCCAAAAATTGA
GGTGGAGCCAAATGCTCCCGCGGACCAGACCAAGACGACACGAATCACAT
CCCTTTTCTTAGAGCGAGAGTTCTTCGTCTCCAGGGTGTATGAACTTGGC
ACGGAGGGCGAGGTTGATATGGAAATTAAGAACAAGGAGGTCGTTGAATT
GATTTGTGCGGCCTTGCTGCTCGCGCAAGAGTCAACAATGGTTCCCAAGG
CAAACCTCCGCGAGGTTCCTTTCAAAGGCATTTGCCGAGAATTCAAGCTT
GGAAGAGATCCAAAAATCTTCCCTTCTACTGTTCTGGTTGAAGGTGGTAT
CAAGTTTGATCGATGCCCCACGGCACAGCACATGAATTTTTCGTCACTCA
CTCAGGTGGGAAGAGGAGCAACGTCGGTGTGTTGTCTTGCCATTGCTGGG
GACGCTTCTGTGTGCGCACTCAAGATATTTCGGGAGAAACAAATGAAAGA
AGCAGCACAGAGCGAACTCAAGAACTGGCAAACGATCTACTGTGAGGACA
AGAAATGGTCCTTCATGCGTGTGGCGGTGGTTGCTGACACCGTCATTCTT
GTGCTCCCATTTTTTACTGTGCCGGGCAGCAAAGAAGAACGTGCACGTTT
TCTGGAGGGAAAGACTCCTAAAGATACTCAACTCTACAAGGCACTGGACT
TTTTTGCTTCGAGAGGTTACACTCACGACGACTTGAAATGGCATCATGTT
GGGAGCTTCACATCCGAGACGAAGAAGCATCGGCTGGATACAAATGATAA
AAATCTCACTCAGACAAATACTTTTCTGCTGGATCTTGGAAAGATCACCA
GGAACGATGTCTTGCAGACGGATAGTGCCAAACGGAGACTTTGGGTGGAG
AAACAATTCAAAGATATGAAATCTCGTCACCTCGGGGAAATGCAGTCTGG
AATGTCAGATTGA
back to top