Gvermi13053.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi13053.t1
Unique NameGvermi13053.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length349
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_5025contigScGOVlb_5025:33..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35128.Thaps23645
PFAMsDUF3638,DUF3645
Max annot lvl2836|Bacillariophyta
Evalue3.34e-152
EggNOG OGs28MX6@1|root,2QUFK@2759|Eukaryota,2XFHN@2836|Bacillariophyta
DescriptionProtein of unknown function (DUF3645)
COG categoryZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13053Gvermi13053Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_5025 33..1079 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13053.t1.CDS1Gvermi13053.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_5025 33..1079 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13053.t1.exon1Gvermi13053.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_5025 33..1079 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13053.t1.start1Gvermi13053.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_5025 1077..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi13053.t1Gvermi13053.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_5025 33..1079 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi13053.t1 ID=Gvermi13053.t1|Name=Gvermi13053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=349bp
MKFLEEKKFGSARRAAKSNGIFGAFSLSSIARRFRDQIETVETEVEPQEV
YYCTEILKLFKSGVLLLDEVDLLLHPLKSELNWPIGFKDPIDYSRSKLGM
GLRWDLFWHLLDGVFYASKQKMSVHFKDSREAITLLQNIASVINRGVADK
HMQHTPHLVLLNKAFYHKEMKPLMARWQLLYLRNKRLPTVEDRHLISYMV
TGPLKDPQAASAVHIALDDEYMKMLNLSHDLLRNFLPHVLSKINRVSYGL
LSKQDLKQAMESGNVSLARRLAAIPFVGKDIPSRASQFSHPDIVIGLTIM
AYRYENLRFTDFENVLSTLREQLDAEFGPYHKRPAALLYKAWVEEAGGK
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spliced messenger RNA

>Gvermi13053.t1 ID=Gvermi13053.t1|Name=Gvermi13053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_5025:33..1079- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATTTCTGGAAGAGAAGAAATTTGGAAGCGCACGGAGAGCGGCTAA
GAGCAATGGCATATTCGGGGCCTTCTCGCTTTCTTCAATCGCTAGACGCT
TTCGAGATCAGATCGAAACAGTCGAGACAGAAGTGGAGCCGCAAGAAGTC
TACTACTGTACCGAAATCCTCAAGCTGTTCAAATCCGGTGTTCTTCTTTT
GGACGAAGTGGACTTGCTGCTGCACCCATTGAAGTCGGAACTCAACTGGC
CGATAGGGTTCAAAGACCCAATCGACTACTCTCGCTCAAAACTCGGCATG
GGACTGCGTTGGGACTTGTTTTGGCACTTGCTCGACGGTGTCTTTTATGC
TTCGAAGCAAAAGATGTCTGTTCATTTTAAAGATTCCCGTGAGGCAATCA
CTCTTTTGCAGAACATCGCTAGCGTCATCAATCGCGGCGTTGCGGACAAG
CACATGCAACATACCCCACACTTGGTCCTACTTAACAAAGCGTTCTACCA
CAAGGAAATGAAGCCGTTGATGGCACGGTGGCAGCTCCTGTATCTGCGGA
ACAAGAGGTTGCCGACCGTAGAGGACAGGCACCTAATTTCGTACATGGTG
ACTGGACCCTTAAAGGATCCACAAGCTGCTTCTGCTGTTCACATTGCTTT
GGACGACGAGTACATGAAAATGCTGAATCTCAGTCACGATCTACTGCGAA
ACTTTTTGCCCCATGTTTTGAGCAAGATCAATCGAGTGAGCTACGGGCTT
CTTTCGAAGCAAGATCTAAAACAGGCAATGGAGTCTGGCAACGTATCACT
TGCTCGCCGTCTCGCTGCTATTCCATTCGTTGGAAAGGATATTCCCAGCC
GTGCCAGTCAGTTCTCTCATCCTGATATCGTAATTGGTCTGACCATTATG
GCCTATCGCTACGAAAACCTGAGGTTTACCGACTTTGAGAACGTGCTATC
TACCTTGCGAGAACAACTCGACGCTGAGTTCGGTCCATATCACAAGAGAC
CCGCGGCATTACTGTACAAGGCTTGGGTAGAAGAGGCCGGAGGAAAG
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protein sequence of Gvermi13053.t1

>Gvermi13053.t1 ID=Gvermi13053.t1|Name=Gvermi13053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=349bp
MKFLEEKKFGSARRAAKSNGIFGAFSLSSIARRFRDQIETVETEVEPQEV
YYCTEILKLFKSGVLLLDEVDLLLHPLKSELNWPIGFKDPIDYSRSKLGM
GLRWDLFWHLLDGVFYASKQKMSVHFKDSREAITLLQNIASVINRGVADK
HMQHTPHLVLLNKAFYHKEMKPLMARWQLLYLRNKRLPTVEDRHLISYMV
TGPLKDPQAASAVHIALDDEYMKMLNLSHDLLRNFLPHVLSKINRVSYGL
LSKQDLKQAMESGNVSLARRLAAIPFVGKDIPSRASQFSHPDIVIGLTIM
AYRYENLRFTDFENVLSTLREQLDAEFGPYHKRPAALLYKAWVEEAGGK
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mRNA from alignment at ScGOVlb_5025:33..1079-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi13053.t1 ID=Gvermi13053.t1|Name=Gvermi13053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at ScGOVlb_5025:33..1079- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATTTCTGGAAGAGAAGAAATTTGGAAGCGCACGGAGAGCGGCTAA
GAGCAATGGCATATTCGGGGCCTTCTCGCTTTCTTCAATCGCTAGACGCT
TTCGAGATCAGATCGAAACAGTCGAGACAGAAGTGGAGCCGCAAGAAGTC
TACTACTGTACCGAAATCCTCAAGCTGTTCAAATCCGGTGTTCTTCTTTT
GGACGAAGTGGACTTGCTGCTGCACCCATTGAAGTCGGAACTCAACTGGC
CGATAGGGTTCAAAGACCCAATCGACTACTCTCGCTCAAAACTCGGCATG
GGACTGCGTTGGGACTTGTTTTGGCACTTGCTCGACGGTGTCTTTTATGC
TTCGAAGCAAAAGATGTCTGTTCATTTTAAAGATTCCCGTGAGGCAATCA
CTCTTTTGCAGAACATCGCTAGCGTCATCAATCGCGGCGTTGCGGACAAG
CACATGCAACATACCCCACACTTGGTCCTACTTAACAAAGCGTTCTACCA
CAAGGAAATGAAGCCGTTGATGGCACGGTGGCAGCTCCTGTATCTGCGGA
ACAAGAGGTTGCCGACCGTAGAGGACAGGCACCTAATTTCGTACATGGTG
ACTGGACCCTTAAAGGATCCACAAGCTGCTTCTGCTGTTCACATTGCTTT
GGACGACGAGTACATGAAAATGCTGAATCTCAGTCACGATCTACTGCGAA
ACTTTTTGCCCCATGTTTTGAGCAAGATCAATCGAGTGAGCTACGGGCTT
CTTTCGAAGCAAGATCTAAAACAGGCAATGGAGTCTGGCAACGTATCACT
TGCTCGCCGTCTCGCTGCTATTCCATTCGTTGGAAAGGATATTCCCAGCC
GTGCCAGTCAGTTCTCTCATCCTGATATCGTAATTGGTCTGACCATTATG
GCCTATCGCTACGAAAACCTGAGGTTTACCGACTTTGAGAACGTGCTATC
TACCTTGCGAGAACAACTCGACGCTGAGTTCGGTCCATATCACAAGAGAC
CCGCGGCATTACTGTACAAGGCTTGGGTAGAAGAGGCCGGAGGAAAG
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Coding sequence (CDS) from alignment at ScGOVlb_5025:33..1079-

>Gvermi13053.t1 ID=Gvermi13053.t1|Name=Gvermi13053.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1047bp|location=Sequence derived from alignment at ScGOVlb_5025:33..1079- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAATTTCTGGAAGAGAAGAAATTTGGAAGCGCACGGAGAGCGGCTAA
GAGCAATGGCATATTCGGGGCCTTCTCGCTTTCTTCAATCGCTAGACGCT
TTCGAGATCAGATCGAAACAGTCGAGACAGAAGTGGAGCCGCAAGAAGTC
TACTACTGTACCGAAATCCTCAAGCTGTTCAAATCCGGTGTTCTTCTTTT
GGACGAAGTGGACTTGCTGCTGCACCCATTGAAGTCGGAACTCAACTGGC
CGATAGGGTTCAAAGACCCAATCGACTACTCTCGCTCAAAACTCGGCATG
GGACTGCGTTGGGACTTGTTTTGGCACTTGCTCGACGGTGTCTTTTATGC
TTCGAAGCAAAAGATGTCTGTTCATTTTAAAGATTCCCGTGAGGCAATCA
CTCTTTTGCAGAACATCGCTAGCGTCATCAATCGCGGCGTTGCGGACAAG
CACATGCAACATACCCCACACTTGGTCCTACTTAACAAAGCGTTCTACCA
CAAGGAAATGAAGCCGTTGATGGCACGGTGGCAGCTCCTGTATCTGCGGA
ACAAGAGGTTGCCGACCGTAGAGGACAGGCACCTAATTTCGTACATGGTG
ACTGGACCCTTAAAGGATCCACAAGCTGCTTCTGCTGTTCACATTGCTTT
GGACGACGAGTACATGAAAATGCTGAATCTCAGTCACGATCTACTGCGAA
ACTTTTTGCCCCATGTTTTGAGCAAGATCAATCGAGTGAGCTACGGGCTT
CTTTCGAAGCAAGATCTAAAACAGGCAATGGAGTCTGGCAACGTATCACT
TGCTCGCCGTCTCGCTGCTATTCCATTCGTTGGAAAGGATATTCCCAGCC
GTGCCAGTCAGTTCTCTCATCCTGATATCGTAATTGGTCTGACCATTATG
GCCTATCGCTACGAAAACCTGAGGTTTACCGACTTTGAGAACGTGCTATC
TACCTTGCGAGAACAACTCGACGCTGAGTTCGGTCCATATCACAAGAGAC
CCGCGGCATTACTGTACAAGGCTTGGGTAGAAGAGGCCGGAGGAAAG
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