Gvermi12987.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12987.t1
Unique NameGvermi12987.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7815contigScGOVlb_7815:1..544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12987Gvermi12987Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_7815 1..544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12987.t1.CDS1Gvermi12987.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_7815 1..544 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12987.t1.exon1Gvermi12987.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_7815 1..544 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12987.t1.start1Gvermi12987.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_7815 542..544 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12987.t1Gvermi12987.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_7815 1..544 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12987.t1 ID=Gvermi12987.t1|Name=Gvermi12987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=182bp
MIDTVEAALNAKVDASNSNNEAVISSVEAQGQVTEVHADDLVVNDQLLTI
DSIRDQMTPEEEDKIYKNAKIVKDSVTKVARDALNINIQASEAYDSSMKA
TDMARKAVQAEKDGKVLENRLEEESGKGKKENRECSTCKKLEEDIEKLKQ
LRKEAAVNAGNSAKSAAKNKDTTARILDEIRX
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spliced messenger RNA

>Gvermi12987.t1 ID=Gvermi12987.t1|Name=Gvermi12987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=544bp|location=Sequence derived from alignment at ScGOVlb_7815:1..544- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGACACTGTGGAAGCTGCTCTGAACGCCAAGGTGGACGCAAGCAA
CTCGAATAACGAGGCCGTGATCTCAAGTGTCGAGGCGCAGGGGCAGGTGA
CTGAGGTTCACGCAGACGACCTGGTTGTGAACGACCAACTGCTTACCATT
GATTCGATAAGAGATCAGATGACGCCCGAGGAGGAGGACAAAATCTACAA
GAATGCGAAAATCGTCAAAGATTCGGTCACCAAGGTTGCTCGCGATGCTC
TTAACATAAACATTCAGGCCTCTGAAGCGTACGACTCAAGCATGAAGGCT
ACCGACATGGCTCGGAAAGCCGTGCAAGCCGAGAAGGATGGCAAGGTCTT
GGAGAACAGACTGGAAGAAGAATCTGGCAAGGGCAAGAAAGAGAATCGCG
AGTGCTCCACGTGCAAGAAGCTGGAGGAAGACATTGAGAAACTGAAGCAA
CTTCGAAAGGAAGCGGCGGTCAATGCCGGAAATTCAGCCAAGAGCGCTGC
GAAAAACAAGGACACAACTGCTCGTATCCTGGACGAAATTCGGG
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protein sequence of Gvermi12987.t1

>Gvermi12987.t1 ID=Gvermi12987.t1|Name=Gvermi12987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=182bp
MIDTVEAALNAKVDASNSNNEAVISSVEAQGQVTEVHADDLVVNDQLLTI
DSIRDQMTPEEEDKIYKNAKIVKDSVTKVARDALNINIQASEAYDSSMKA
TDMARKAVQAEKDGKVLENRLEEESGKGKKENRECSTCKKLEEDIEKLKQ
LRKEAAVNAGNSAKSAAKNKDTTARILDEIRX
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mRNA from alignment at ScGOVlb_7815:1..544-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12987.t1 ID=Gvermi12987.t1|Name=Gvermi12987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=544bp|location=Sequence derived from alignment at ScGOVlb_7815:1..544- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGACACTGTGGAAGCTGCTCTGAACGCCAAGGTGGACGCAAGCAA
CTCGAATAACGAGGCCGTGATCTCAAGTGTCGAGGCGCAGGGGCAGGTGA
CTGAGGTTCACGCAGACGACCTGGTTGTGAACGACCAACTGCTTACCATT
GATTCGATAAGAGATCAGATGACGCCCGAGGAGGAGGACAAAATCTACAA
GAATGCGAAAATCGTCAAAGATTCGGTCACCAAGGTTGCTCGCGATGCTC
TTAACATAAACATTCAGGCCTCTGAAGCGTACGACTCAAGCATGAAGGCT
ACCGACATGGCTCGGAAAGCCGTGCAAGCCGAGAAGGATGGCAAGGTCTT
GGAGAACAGACTGGAAGAAGAATCTGGCAAGGGCAAGAAAGAGAATCGCG
AGTGCTCCACGTGCAAGAAGCTGGAGGAAGACATTGAGAAACTGAAGCAA
CTTCGAAAGGAAGCGGCGGTCAATGCCGGAAATTCAGCCAAGAGCGCTGC
GAAAAACAAGGACACAACTGCTCGTATCCTGGACGAAATTCGGG
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Coding sequence (CDS) from alignment at ScGOVlb_7815:1..544-

>Gvermi12987.t1 ID=Gvermi12987.t1|Name=Gvermi12987.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=544bp|location=Sequence derived from alignment at ScGOVlb_7815:1..544- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCGACACTGTGGAAGCTGCTCTGAACGCCAAGGTGGACGCAAGCAA
CTCGAATAACGAGGCCGTGATCTCAAGTGTCGAGGCGCAGGGGCAGGTGA
CTGAGGTTCACGCAGACGACCTGGTTGTGAACGACCAACTGCTTACCATT
GATTCGATAAGAGATCAGATGACGCCCGAGGAGGAGGACAAAATCTACAA
GAATGCGAAAATCGTCAAAGATTCGGTCACCAAGGTTGCTCGCGATGCTC
TTAACATAAACATTCAGGCCTCTGAAGCGTACGACTCAAGCATGAAGGCT
ACCGACATGGCTCGGAAAGCCGTGCAAGCCGAGAAGGATGGCAAGGTCTT
GGAGAACAGACTGGAAGAAGAATCTGGCAAGGGCAAGAAAGAGAATCGCG
AGTGCTCCACGTGCAAGAAGCTGGAGGAAGACATTGAGAAACTGAAGCAA
CTTCGAAAGGAAGCGGCGGTCAATGCCGGAAATTCAGCCAAGAGCGCTGC
GAAAAACAAGGACACAACTGCTCGTATCCTGGACGAAATTCGGG
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