Gvermi12946.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12946.t1
Unique NameGvermi12946.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2352491..2353000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12946Gvermi12946Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2352491..2353000 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12946.t1.start1Gvermi12946.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2352491..2352493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12946.t1.CDS1Gvermi12946.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2352491..2353000 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12946.t1.exon1Gvermi12946.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2352491..2353000 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12946.t1.stop1Gvermi12946.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2352998..2353000 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12946.t1Gvermi12946.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2352491..2353000 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12946.t1 ID=Gvermi12946.t1|Name=Gvermi12946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=170bp
MLVWLDLTALGTSSAKTKQTSPPSEQAPEKRNRPHGPRSKLRKNETDLTA
LGASSGKTKEDLTALGACSGKIRPHGPRSKRRKTQRRSHGPRSKLRKNQT
SRSSEQAPEKPKKISRPSEQASEKSDLTALGASSGKTKEDLTALGEREVQ
NSECLILAFVRSAYLGTTH*
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spliced messenger RNA

>Gvermi12946.t1 ID=Gvermi12946.t1|Name=Gvermi12946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp|location=Sequence derived from alignment at ScGOVlb_425:2352491..2353000+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTGTGGCTAGACCTCACGGCCCTCGGAACAAGCTCCGCAAAAAC
GAAACAGACCTCACCGCCCTCGGAGCAAGCTCCGGAAAAACGAAACAGAC
CTCACGGCCCTCGGAGCAAGCTCCGGAAAAACGAAACAGACCTCACGGCC
CTCGGAGCAAGCTCCGGAAAAACCAAAGAAGATCTCACTGCCCTCGGAGC
ATGCTCCGGAAAAATCAGACCTCACGGCCCTCGGAGCAAGCGCCGGAAAA
CCCAAAGAAGATCTCACGGCCCTCGGAGCAAGCTCCGGAAAAATCAGACC
TCACGGTCCTCGGAGCAAGCTCCGGAAAAACCAAAGAAGATCTCACGGCC
CTCGGAGCAAGCTTCGGAAAAATCAGACCTCACGGCCCTCGGAGCAAGCT
CCGGAAAAACCAAAGAAGACCTCACGGCCCTCGGAGAGAGAGAAGTACAG
AACAGCGAGTGCCTCATCTTGGCGTTTGTACGCTCTGCTTATCTTGGTAC
GACGCATTAA
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protein sequence of Gvermi12946.t1

>Gvermi12946.t1 ID=Gvermi12946.t1|Name=Gvermi12946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=170bp
MLVWLDLTALGTSSAKTKQTSPPSEQAPEKRNRPHGPRSKLRKNETDLTA
LGASSGKTKEDLTALGACSGKIRPHGPRSKRRKTQRRSHGPRSKLRKNQT
SRSSEQAPEKPKKISRPSEQASEKSDLTALGASSGKTKEDLTALGEREVQ
NSECLILAFVRSAYLGTTH*
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mRNA from alignment at ScGOVlb_425:2352491..2353000+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12946.t1 ID=Gvermi12946.t1|Name=Gvermi12946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=510bp|location=Sequence derived from alignment at ScGOVlb_425:2352491..2353000+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGTGTGGCTAGACCTCACGGCCCTCGGAACAAGCTCCGCAAAAAC
GAAACAGACCTCACCGCCCTCGGAGCAAGCTCCGGAAAAACGAAACAGAC
CTCACGGCCCTCGGAGCAAGCTCCGGAAAAACGAAACAGACCTCACGGCC
CTCGGAGCAAGCTCCGGAAAAACCAAAGAAGATCTCACTGCCCTCGGAGC
ATGCTCCGGAAAAATCAGACCTCACGGCCCTCGGAGCAAGCGCCGGAAAA
CCCAAAGAAGATCTCACGGCCCTCGGAGCAAGCTCCGGAAAAATCAGACC
TCACGGTCCTCGGAGCAAGCTCCGGAAAAACCAAAGAAGATCTCACGGCC
CTCGGAGCAAGCTTCGGAAAAATCAGACCTCACGGCCCTCGGAGCAAGCT
CCGGAAAAACCAAAGAAGACCTCACGGCCCTCGGAGAGAGAGAAGTACAG
AACAGCGAGTGCCTCATCTTGGCGTTTGTACGCTCTGCTTATCTTGGTAC
GACGCATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:2352491..2353000+

>Gvermi12946.t1 ID=Gvermi12946.t1|Name=Gvermi12946.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=510bp|location=Sequence derived from alignment at ScGOVlb_425:2352491..2353000+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGTGTGGCTAGACCTCACGGCCCTCGGAACAAGCTCCGCAAAAAC
GAAACAGACCTCACCGCCCTCGGAGCAAGCTCCGGAAAAACGAAACAGAC
CTCACGGCCCTCGGAGCAAGCTCCGGAAAAACGAAACAGACCTCACGGCC
CTCGGAGCAAGCTCCGGAAAAACCAAAGAAGATCTCACTGCCCTCGGAGC
ATGCTCCGGAAAAATCAGACCTCACGGCCCTCGGAGCAAGCGCCGGAAAA
CCCAAAGAAGATCTCACGGCCCTCGGAGCAAGCTCCGGAAAAATCAGACC
TCACGGTCCTCGGAGCAAGCTCCGGAAAAACCAAAGAAGATCTCACGGCC
CTCGGAGCAAGCTTCGGAAAAATCAGACCTCACGGCCCTCGGAGCAAGCT
CCGGAAAAACCAAAGAAGACCTCACGGCCCTCGGAGAGAGAGAAGTACAG
AACAGCGAGTGCCTCATCTTGGCGTTTGTACGCTCTGCTTATCTTGGTAC
GACGCATTAA
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