Gvermi12945.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12945.t1
Unique NameGvermi12945.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2350158..2352102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173264.KI913949_gene1400
Preferred namednaE
PFAMsDNA_pol3_alpha,HHH_6,PHP,tRNA_anti-codon
Max annot lvl1117|Cyanobacteria
KEGG rclassRC02795
KEGG koko:K02337
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03430,ko03440,map00230,map00240,map01100,map03030,map03430,map03440
KEGG ModuleM00260
Evalue1.99e-181
EggNOG OGsCOG0587@1|root,COG0587@2|Bacteria,1G0US@1117|Cyanobacteria,1H71N@1150|Oscillatoriales
EC2.7.7.7
DescriptionDNA polymerase III alpha subunit
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12945Gvermi12945Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2350158..2352102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12945.t1Gvermi12945.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2350158..2352102 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12945.t1.stop1Gvermi12945.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2350158..2350160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12945.t1.CDS1Gvermi12945.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2350158..2350561 -
Gvermi12945.t1.CDS2Gvermi12945.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2350698..2351160 -
Gvermi12945.t1.CDS3Gvermi12945.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2351221..2351664 -
Gvermi12945.t1.CDS4Gvermi12945.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2351791..2352102 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12945.t1.exon1Gvermi12945.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2350158..2350561 -
Gvermi12945.t1.exon2Gvermi12945.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2350698..2351160 -
Gvermi12945.t1.exon3Gvermi12945.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2351221..2351664 -
Gvermi12945.t1.exon4Gvermi12945.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2351791..2352102 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12945.t1.intron1Gvermi12945.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2350562..2350697 -
Gvermi12945.t1.intron2Gvermi12945.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2351161..2351220 -
Gvermi12945.t1.intron3Gvermi12945.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2351665..2351790 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12945.t1.start1Gvermi12945.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2352100..2352102 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12945.t1 ID=Gvermi12945.t1|Name=Gvermi12945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=541bp
LQSPADRASVDVLPPNQYVPLHVHSHYSLLDGASQLPSLVAKAAELDVPA
LALTDHGVLYGAVQLVRACSETEVKPIIGNEMYIVNDIPDGQPNGKGPKR
YHLIYREGLIVSSACLRGEIAQAILNDDIDSARTVASWFRDVFRDDVYLE
IQDHGSEEDKKVKPVMVQLSKELSIKVIDTNDSHFTSCLDAEAHDALICI
QTRKRLSDENRLRYSGTEYFKSVDEMRQCFVDHPPLPAVDEALYNTLCVD
DIFGSSHDAYLRHVAQLGLQERLKARIKSGLIRTGSERTYIERLELELDM
IRRMGFSSYFLVVWDYIHFARTNSMPVGPGRGSAAGSLVAFALRITDVDP
IPFNLLFERFLNIERKSMPDIDTDVSVEGREKVIAYVTERYGQSRVAQII
TFNRLTIDFKKAVESRPDYGEWLDKAQRIEEKNKKFGIHAAGVVISANPM
TDIVPLTKAKHGETITQYAMEDVESVDLLKMDFLFLKNLTVIDKTLKFIN
QGRREQGNDEDLHFSVDALPLDDENTFRLLSEGELDGIFQ*
back to top

spliced messenger RNA

>Gvermi12945.t1 ID=Gvermi12945.t1|Name=Gvermi12945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at ScGOVlb_425:2350158..2352102- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAGTCGCCTGCTGATCGTGCTAGCGTTGATGTTTTGCCGCCAAACCA
GTATGTTCCGCTTCACGTGCATTCGCACTATTCACTACTAGATGGTGCTA
GTCAATTACCATCGCTCGTGGCGAAGGCTGCCGAATTGGATGTGCCGGCG
TTAGCATTAACCGACCATGGGGTGCTGTATGGGGCCGTTCAACTTGTCCG
CGCGTGCAGCGAAACCGAGGTGAAGCCCATTATCGGCAATGAGATGTACA
TAGTTAATGACATTCCAGACGGACAACCAAATGGAAAAGGTCCCAAGCGC
TATCATCTTATTTATCGTGAAGGTCTTATCGTCTCCAGCGCCTGTCTAAG
AGGGGAGATAGCACAAGCAATCCTTAATGACGACATTGATTCAGCTCGGA
CAGTAGCCAGTTGGTTTCGTGATGTCTTTCGAGACGACGTTTACCTCGAA
ATACAGGATCATGGAAGCGAGGAGGATAAGAAAGTTAAGCCTGTCATGGT
ACAGCTCTCTAAAGAGCTTTCGATTAAGGTTATTGATACTAACGATAGTC
ATTTCACAAGTTGTCTCGACGCTGAGGCTCATGATGCTCTCATATGCATT
CAAACAAGGAAACGATTATCTGATGAAAACCGTTTGCGCTACTCGGGAAC
CGAATACTTCAAGTCTGTCGATGAAATGCGCCAATGTTTTGTGGATCATC
CACCACTTCCCGCAGTTGACGAGGCTCTGTATAATACACTTTGCGTGGAT
GATATATTCGGCAGTTCTCACGATGCGTACTTGCGACATGTTGCTCAGTT
GGGACTACAGGAGCGATTGAAAGCAAGAATCAAGTCAGGTTTGATTCGTA
CGGGGTCAGAGCGCACTTACATTGAACGCCTGGAGCTGGAATTGGACATG
ATTCGTCGCATGGGTTTCTCATCGTACTTCTTGGTTGTATGGGATTACAT
TCATTTTGCCAGGACTAACAGCATGCCTGTTGGACCTGGGCGGGGGTCGG
CTGCCGGCTCCCTTGTTGCATTTGCTTTGAGAATAACGGATGTGGACCCA
ATTCCGTTCAACTTGCTCTTTGAACGGTTTCTCAACATCGAGCGAAAGAG
TATGCCGGACATTGACACGGACGTTTCGGTCGAAGGGAGAGAGAAAGTTA
TTGCGTATGTGACTGAACGATATGGTCAAAGCCGCGTGGCGCAAATCATC
ACGTTCAATCGACTCACGATAGACTTTAAGAAAGCTGTTGAAAGCCGTCC
AGATTATGGAGAGTGGTTGGATAAAGCACAGCGTATCGAAGAGAAAAACA
AGAAATTTGGCATTCACGCGGCAGGTGTCGTCATATCAGCGAATCCCATG
ACTGACATTGTTCCACTGACGAAAGCGAAACATGGGGAAACTATCACACA
GTATGCGATGGAGGATGTCGAGTCTGTTGATCTACTGAAGATGGACTTCC
TTTTCTTAAAGAATTTAACTGTAATAGATAAGACCTTGAAGTTCATTAAT
CAAGGGAGACGAGAACAAGGCAATGATGAGGATCTTCACTTCTCCGTGGA
TGCGCTCCCCCTTGACGACGAAAACACGTTCAGGTTACTTTCAGAAGGAG
AGTTAGATGGCATCTTTCAATGA
back to top

protein sequence of Gvermi12945.t1

>Gvermi12945.t1 ID=Gvermi12945.t1|Name=Gvermi12945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=541bp
LQSPADRASVDVLPPNQYVPLHVHSHYSLLDGASQLPSLVAKAAELDVPA
LALTDHGVLYGAVQLVRACSETEVKPIIGNEMYIVNDIPDGQPNGKGPKR
YHLIYREGLIVSSACLRGEIAQAILNDDIDSARTVASWFRDVFRDDVYLE
IQDHGSEEDKKVKPVMVQLSKELSIKVIDTNDSHFTSCLDAEAHDALICI
QTRKRLSDENRLRYSGTEYFKSVDEMRQCFVDHPPLPAVDEALYNTLCVD
DIFGSSHDAYLRHVAQLGLQERLKARIKSGLIRTGSERTYIERLELELDM
IRRMGFSSYFLVVWDYIHFARTNSMPVGPGRGSAAGSLVAFALRITDVDP
IPFNLLFERFLNIERKSMPDIDTDVSVEGREKVIAYVTERYGQSRVAQII
TFNRLTIDFKKAVESRPDYGEWLDKAQRIEEKNKKFGIHAAGVVISANPM
TDIVPLTKAKHGETITQYAMEDVESVDLLKMDFLFLKNLTVIDKTLKFIN
QGRREQGNDEDLHFSVDALPLDDENTFRLLSEGELDGIFQ*
back to top

mRNA from alignment at ScGOVlb_425:2350158..2352102-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12945.t1 ID=Gvermi12945.t1|Name=Gvermi12945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1945bp|location=Sequence derived from alignment at ScGOVlb_425:2350158..2352102- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCAGTCGCCTGCTGATCGTGCTAGCGTTGATGTTTTGCCGCCAAACCA
GTATGTTCCGCTTCACGTGCATTCGCACTATTCACTACTAGATGGTGCTA
GTCAATTACCATCGCTCGTGGCGAAGGCTGCCGAATTGGATGTGCCGGCG
TTAGCATTAACCGACCATGGGGTGCTGTATGGGGCCGTTCAACTTGTCCG
CGCGTGCAGCGAAACCGAGGTGAAGCCCATTATCGGCAATGAGATGTACA
TAGTTAATGACATTCCAGACGGACAACCAAATGGAAAAGGTCCCAAGCGC
TATCATCTTATTGTTTGAGCGAAGAATGATATTGGTTACAGAAACTTGGT
CAAGCTTACGACTCGAGCGCATCTTGAGGGTGTAGTTGGAAAAGGGATCT
TTGCAAGGCCGTGCATAAACAAGGCGCAACTGTATTAGTATCGTGAAGGT
CTTATCGTCTCCAGCGCCTGTCTAAGAGGGGAGATAGCACAAGCAATCCT
TAATGACGACATTGATTCAGCTCGGACAGTAGCCAGTTGGTTTCGTGATG
TCTTTCGAGACGACGTTTACCTCGAAATACAGGATCATGGAAGCGAGGAG
GATAAGAAAGTTAAGCCTGTCATGGTACAGCTCTCTAAAGAGCTTTCGAT
TAAGGTTATTGATACTAACGATAGTCATTTCACAAGTTGTCTCGACGCTG
AGGCTCATGATGCTCTCATATGCATTCAAACAAGGAAACGATTATCTGAT
GAAAACCGTTTGCGCTACTCGGGAACCGAATACTTCAAGTCTGTCGATGA
AATGCGCCAATGTTTTGTGGATCATCCACCACTTCCCGCAGTTGACGAGG
CTCTGTATAATACACTTTGCGTGGATGATATAGTTGATCCGTATAACTTG
TTCGCTGCGACTTGAATTCCCGATTTTCCTGTACCAAACAAGTTCGGCAG
TTCTCACGATGCGTACTTGCGACATGTTGCTCAGTTGGGACTACAGGAGC
GATTGAAAGCAAGAATCAAGTCAGGTTTGATTCGTACGGGGTCAGAGCGC
ACTTACATTGAACGCCTGGAGCTGGAATTGGACATGATTCGTCGCATGGG
TTTCTCATCGTACTTCTTGGTTGTATGGGATTACATTCATTTTGCCAGGA
CTAACAGCATGCCTGTTGGACCTGGGCGGGGGTCGGCTGCCGGCTCCCTT
GTTGCATTTGCTTTGAGAATAACGGATGTGGACCCAATTCCGTTCAACTT
GCTCTTTGAACGGTTTCTCAACATCGAGCGAAAGAGTATGCCGGACATTG
ACACGGACGTTTCGGTCGAAGGGAGAGAGAAAGTTATTGCGTATGTGACT
GAACGATATGGTCAAAGCCGCGTGGCGCAAATCATCACGTTCAATCGACT
CACGAGTAAAGCAGTACTCAAAGATGTGGCTCGAGTGCATAATGTGTCGT
ATAAGGAAGCCGACTGATTGGCGAAACTCATCCCAGTAAGTCGAGGGAAA
CCGGCGACCTTGAAGGATTTGCTTTGGAACAAGCCATCTAGTAGACTTTA
AGAAAGCTGTTGAAAGCCGTCCAGATTATGGAGAGTGGTTGGATAAAGCA
CAGCGTATCGAAGAGAAAAACAAGAAATTTGGCATTCACGCGGCAGGTGT
CGTCATATCAGCGAATCCCATGACTGACATTGTTCCACTGACGAAAGCGA
AACATGGGGAAACTATCACACAGTATGCGATGGAGGATGTCGAGTCTGTT
GATCTACTGAAGATGGACTTCCTTTTCTTAAAGAATTTAACTGTAATAGA
TAAGACCTTGAAGTTCATTAATCAAGGGAGACGAGAACAAGGCAATGATG
AGGATCTTCACTTCTCCGTGGATGCGCTCCCCCTTGACGACGAAAACACG
TTCAGGTTACTTTCAGAAGGAGAGTTAGATGGCATCTTTCAATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2350158..2352102-

>Gvermi12945.t1 ID=Gvermi12945.t1|Name=Gvermi12945.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1623bp|location=Sequence derived from alignment at ScGOVlb_425:2350158..2352102- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCAGTCGCCTGCTGATCGTGCTAGCGTTGATGTTTTGCCGCCAAACCA
GTATGTTCCGCTTCACGTGCATTCGCACTATTCACTACTAGATGGTGCTA
GTCAATTACCATCGCTCGTGGCGAAGGCTGCCGAATTGGATGTGCCGGCG
TTAGCATTAACCGACCATGGGGTGCTGTATGGGGCCGTTCAACTTGTCCG
CGCGTGCAGCGAAACCGAGGTGAAGCCCATTATCGGCAATGAGATGTACA
TAGTTAATGACATTCCAGACGGACAACCAAATGGAAAAGGTCCCAAGCGC
TATCATCTTATTTATCGTGAAGGTCTTATCGTCTCCAGCGCCTGTCTAAG
AGGGGAGATAGCACAAGCAATCCTTAATGACGACATTGATTCAGCTCGGA
CAGTAGCCAGTTGGTTTCGTGATGTCTTTCGAGACGACGTTTACCTCGAA
ATACAGGATCATGGAAGCGAGGAGGATAAGAAAGTTAAGCCTGTCATGGT
ACAGCTCTCTAAAGAGCTTTCGATTAAGGTTATTGATACTAACGATAGTC
ATTTCACAAGTTGTCTCGACGCTGAGGCTCATGATGCTCTCATATGCATT
CAAACAAGGAAACGATTATCTGATGAAAACCGTTTGCGCTACTCGGGAAC
CGAATACTTCAAGTCTGTCGATGAAATGCGCCAATGTTTTGTGGATCATC
CACCACTTCCCGCAGTTGACGAGGCTCTGTATAATACACTTTGCGTGGAT
GATATATTCGGCAGTTCTCACGATGCGTACTTGCGACATGTTGCTCAGTT
GGGACTACAGGAGCGATTGAAAGCAAGAATCAAGTCAGGTTTGATTCGTA
CGGGGTCAGAGCGCACTTACATTGAACGCCTGGAGCTGGAATTGGACATG
ATTCGTCGCATGGGTTTCTCATCGTACTTCTTGGTTGTATGGGATTACAT
TCATTTTGCCAGGACTAACAGCATGCCTGTTGGACCTGGGCGGGGGTCGG
CTGCCGGCTCCCTTGTTGCATTTGCTTTGAGAATAACGGATGTGGACCCA
ATTCCGTTCAACTTGCTCTTTGAACGGTTTCTCAACATCGAGCGAAAGAG
TATGCCGGACATTGACACGGACGTTTCGGTCGAAGGGAGAGAGAAAGTTA
TTGCGTATGTGACTGAACGATATGGTCAAAGCCGCGTGGCGCAAATCATC
ACGTTCAATCGACTCACGATAGACTTTAAGAAAGCTGTTGAAAGCCGTCC
AGATTATGGAGAGTGGTTGGATAAAGCACAGCGTATCGAAGAGAAAAACA
AGAAATTTGGCATTCACGCGGCAGGTGTCGTCATATCAGCGAATCCCATG
ACTGACATTGTTCCACTGACGAAAGCGAAACATGGGGAAACTATCACACA
GTATGCGATGGAGGATGTCGAGTCTGTTGATCTACTGAAGATGGACTTCC
TTTTCTTAAAGAATTTAACTGTAATAGATAAGACCTTGAAGTTCATTAAT
CAAGGGAGACGAGAACAAGGCAATGATGAGGATCTTCACTTCTCCGTGGA
TGCGCTCCCCCTTGACGACGAAAACACGTTCAGGTTACTTTCAGAAGGAG
AGTTAGATGGCATCTTTCAATGA
back to top