Gvermi12942.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12942.t1
Unique NameGvermi12942.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2345862..2346372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12942Gvermi12942Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 2345862..2346372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12942.t1Gvermi12942.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 2345862..2346372 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12942.t1.start1Gvermi12942.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 2345862..2345864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12942.t1.CDS1Gvermi12942.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2345862..2345964 +
Gvermi12942.t1.CDS2Gvermi12942.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 2346131..2346372 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12942.t1.exon1Gvermi12942.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2345862..2345964 +
Gvermi12942.t1.exon2Gvermi12942.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 2346131..2346372 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12942.t1.intron1Gvermi12942.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 2345965..2346130 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12942.t1.stop1Gvermi12942.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 2346370..2346372 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12942.t1 ID=Gvermi12942.t1|Name=Gvermi12942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=115bp
MMAQVSSSRTVDDDDELLEISKNATVTERDFVFTEPGQKLFQAQRRNIQI
VPEEEFFTVFQVSPAEQQGLSIEKSDKNKKVKYVVRRDMRYLTSNGGIRV
YASWQAVSANRNKT*
back to top

spliced messenger RNA

>Gvermi12942.t1 ID=Gvermi12942.t1|Name=Gvermi12942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp|location=Sequence derived from alignment at ScGOVlb_425:2345862..2346372+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGCAGGTAAGTTCCAGTCGGACCGTTGATGACGATGACGAACT
TTTAGAAATTTCCAAGAATGCAACTGTTACAGAACGTGATTTCGTCTTCA
CTGAACCAGGTCAGAAGCTTTTCCAGGCGCAGAGAAGAAATATTCAGATT
GTTCCGGAAGAAGAGTTCTTCACTGTCTTCCAAGTGAGTCCAGCAGAGCA
ACAAGGTCTTTCTATAGAAAAGAGCGATAAGAATAAGAAAGTTAAATACG
TTGTACGTAGAGACATGAGGTACCTCACGAGCAATGGAGGTATAAGAGTC
TATGCATCATGGCAGGCTGTCTCCGCCAACAGAAACAAAACTTGA
back to top

protein sequence of Gvermi12942.t1

>Gvermi12942.t1 ID=Gvermi12942.t1|Name=Gvermi12942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
MMAQVSSSRTVDDDDELLEISKNATVTERDFVFTEPGQKLFQAQRRNIQI
VPEEEFFTVFQVSPAEQQGLSIEKSDKNKKVKYVVRRDMRYLTSNGGIRV
YASWQAVSANRNKT*
back to top

mRNA from alignment at ScGOVlb_425:2345862..2346372+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12942.t1 ID=Gvermi12942.t1|Name=Gvermi12942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=511bp|location=Sequence derived from alignment at ScGOVlb_425:2345862..2346372+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCGCAGGTAAGTTCCAGTCGGACCGTTGATGACGATGACGAACT
TTTAGAAATTTCCAAGAATGCAACTGTTACAGAACGTGATTTCGTCTTCA
CTGGTAAGTTTGTCACTGTCAATCGCCACGAGATAATGAAATGGGTTCGA
AGGTCTGGAGGATTCGTGAAGAGCTTCTGACCTGGTTCTAATCCATAAAT
GACATAGTCCGTCTTGTGTGTAGCGGAACTCCGTTACACACAAGACCGAC
TATGTCATTTATGGATTAGAACCAGGTCAGAAGCTTTTCCAGGCGCAGAG
AAGAAATATTCAGATTGTTCCGGAAGAAGAGTTCTTCACTGTCTTCCAAG
TGAGTCCAGCAGAGCAACAAGGTCTTTCTATAGAAAAGAGCGATAAGAAT
AAGAAAGTTAAATACGTTGTACGTAGAGACATGAGGTACCTCACGAGCAA
TGGAGGTATAAGAGTCTATGCATCATGGCAGGCTGTCTCCGCCAACAGAA
ACAAAACTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:2345862..2346372+

>Gvermi12942.t1 ID=Gvermi12942.t1|Name=Gvermi12942.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=345bp|location=Sequence derived from alignment at ScGOVlb_425:2345862..2346372+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGGCGCAGGTAAGTTCCAGTCGGACCGTTGATGACGATGACGAACT
TTTAGAAATTTCCAAGAATGCAACTGTTACAGAACGTGATTTCGTCTTCA
CTGAACCAGGTCAGAAGCTTTTCCAGGCGCAGAGAAGAAATATTCAGATT
GTTCCGGAAGAAGAGTTCTTCACTGTCTTCCAAGTGAGTCCAGCAGAGCA
ACAAGGTCTTTCTATAGAAAAGAGCGATAAGAATAAGAAAGTTAAATACG
TTGTACGTAGAGACATGAGGTACCTCACGAGCAATGGAGGTATAAGAGTC
TATGCATCATGGCAGGCTGTCTCCGCCAACAGAAACAAAACTTGA
back to top